RLG00000017958

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
23648683 .. 23652180
3498 bp
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UTR
Exon/CDS
Intron
RLM00000017958

Sequence Viewer

Length: 1398 bp
ATGCTTGATGGAACAGTGATACAATTAAAGTCGGTAATTTTGGATAAGTATGTCTCTGCCGAAAATGGGGGAGGGGCCAATGTCTCTGTTAGTAGAGATGCTGCATCTTCGTGGGAAACGCTTAGGTTATGGAGAGTTTCTGAAACAGAATTTCATTTCCGCACTTCGCTTGGACAGTTTCTAACTTGTGATGGTGGTGACGGTTGCTTTATTTCTGCAACTGCAGTATCACCTTCGACATCATTTTTTGTTGAAAGAAATAACGGGAGGGTTCACATCAAAACAATGAGTGGCACATATTTGCAGGCTACAATGGCAAATCAGCTTGTGGCAAACTATCCAGGGAAACCAGGATGGGATGATAATGCAGCCACATTTGAAATGACCATTGTTGCTAATAACTTGCATGGAGACTACCAGCTTGCAAATGGATATGGACACAATAACGCCAAAGCTGTTCTCAAGAGGCATAGGAACAGTTTCATCACTATAGGAGATTTCAATTTTCTGTCTAGACATGGAATAAATACTGTGAGGATCCCTGTTGGCTGGTGGATTGCTTATGATCCAGATCCTCCTGCACCATTTATTGGTGGAACTTTGGAAGCTCTAGACAATGCATTCTCATGGGCACAATCATATAATATTAGGTGCATCATTGACCTTCATGCGGCTCCTGGCTCTCAGAATGGGATGGAACATAGTGCTAGTAGGGATGGTTCAACTGATTGGCCTACTCCAGATTCCATTTCACAAACATTGCACGTTATAGACTTTCTAATTTCCAGGTATGCCAGACAGCCTGCTTTGCTGGGAATTGAGCTTTTGAATGAACCATCTGCTGCTACTGTTCCATTGGACAGTTTAGTTTCGTATTACAAACAAGGTTATGAAGTTGTTCGGAAATACTCGTCAACAACTTATGTAATAATTTGTCAAAGAATTGGCAATGCAGATCCATTGGAACTTTTTCAGGCTGACATTGGCTCACATAATATTGTGGTGGATTTGCATTATTACAATCTTTTTGACAATTACTTTGTCAACATGAGCCCTACGGATAATATACAATTCATATACAAGAGCAGGGAAACTCAATTGCAGGCCCTGAACAGTGCAAACGGTCCACTTGTTTTTATTGGAGAGTGGGTCAACGAGTGGAATGTAACGAGTGCCTCGCAGACAGATTATCAACACTTTGGGAGGGTCCAGTTAGAAGTTTACAATGCAGCTTCATTTGGATGGGCTTACTGGACACTGAAGAATGATAAACCTCACTGGGATTTTGAATGGAACATTAGAAACAATAATCTTCGATTGAGTAGTTCGCCCAACATACGGAATGTTAACAGTTTAGTGTCGCTTGTATTACTGTTCTATCTGCATCATATCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

466

Amino Acids

52.19

Weight (kDa)

5.72

Isoelectric Point (pI)

36.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7910 PF25490 1 - 131 8.2e-45 Domain of unknown function (DUF7910)
Cellulase PF00150 167 - 423 3.6e-21 Cellulase (glycosyl hydrolase family 5)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015519)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 590
AciI CCGC 2 cut(s) 160, 671
AclWI GGATC 5 cut(s) 532, 545, 560, 566, 950
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 1280
AfiI CCNNNNNNNGG 4 cut(s) 66, 590, 670, 1338
AgsI TTSAA 6 cut(s) 254, 380, 502, 723, 829, 1289
AjnI CCWGG 4 cut(s) 340, 349, 676, 785
AluBI AGCT 6 cut(s) 325, 421, 455, 608, 823, 1232
AluI AGCT 6 cut(s) 325, 421, 455, 608, 823, 1232
Alw26I GTCTC 3 cut(s) 58, 88, 405
AlwI GGATC 5 cut(s) 532, 545, 560, 566, 950
AlwNI CAGNNNCTG 1 cut(s) 1108
AoxI GGCC 3 cut(s) 75, 731, 1104
ApeKI GCWGC 4 cut(s) 101, 368, 842, 1229
ApoI RAATTY 1 cut(s) 149
ArsI GACNNNNNNTTYG 2 cut(s) 1022, 1054
Asp700I GAANNNNTTC 3 cut(s) 479, 897, 969
AspS9I GGNCC 4 cut(s) 75, 1105, 1124, 1207
AsuHPI GGTGA 2 cut(s) 209, 222
AvaII GGWCC 2 cut(s) 1124, 1207
BaeGI GKGCMC 1 cut(s) 634
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
BamHI GGATCC 1 cut(s) 537
BanII GRGCYC 1 cut(s) 1055
BbvI GCAGC 4 cut(s) 88, 380, 829, 1241
BccI CCATC 7 cut(s) 2, 185, 348, 688, 710, 844, 1236
BciT130I CCWGG 4 cut(s) 342, 351, 678, 787
BcoDI GTCTC 3 cut(s) 58, 88, 405
BfaI CTAG 3 cut(s) 513, 611, 708
BfmI CTRYAG 2 cut(s) 222, 489
BisI GCNGC 5 cut(s) 102, 369, 672, 843, 1230
BlsI GCNGC 5 cut(s) 103, 370, 673, 844, 1231
Bme1390I CCNGG 4 cut(s) 342, 351, 678, 787
Bme18I GGWCC 2 cut(s) 1124, 1207
BmgT120I GGNCC 4 cut(s) 75, 1105, 1124, 1207
BmiI GGNNCC 4 cut(s) 76, 539, 675, 1208
BmrFI CCNGG 4 cut(s) 342, 351, 678, 787
BmrI ACTGGG 1 cut(s) 1288
BmsI GCATC 4 cut(s) 88, 113, 663, 1393
BmuI ACTGGG 1 cut(s) 1288
BpmI CTGGAG 1 cut(s) 723
Bpu10I CCTNAGC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 446
BsaBI GATNNNNATC 1 cut(s) 570
BsaJI CCNNGG 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 1134, 1164
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 590, 670, 1338
Bse1I ACTGG 3 cut(s) 1210, 1256, 1283
Bse3DI GCAATG 2 cut(s) 758, 955
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 4 cut(s) 342, 351, 678, 787
BseDI CCNNGG 1 cut(s) 341
BseGI GGATG 5 cut(s) 359, 364, 699, 721, 1247
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 4 cut(s) 66, 590, 670, 1338
BseMI GCAATG 2 cut(s) 758, 955
BseMII CTCAG 1 cut(s) 698
BseNI ACTGG 3 cut(s) 1210, 1256, 1283
BseSI GKGCMC 1 cut(s) 634
BseXI GCAGC 4 cut(s) 88, 380, 829, 1241
BseYI CCCAGC 1 cut(s) 811
BsgI GTGCAG 1 cut(s) 564
BshFI GGCC 3 cut(s) 77, 733, 1106
BslI CCNNNNNNNGG 4 cut(s) 66, 590, 670, 1338
BsmAI GTCTC 3 cut(s) 58, 88, 405
BsmI GAATGC 1 cut(s) 620
BsnI GGCC 3 cut(s) 77, 733, 1106
Bsp1286I GDGCHC 2 cut(s) 634, 1055
Bsp143I GATC 4 cut(s) 537, 565, 571, 955
BspACI CCGC 2 cut(s) 160, 671
BspANI GGCC 3 cut(s) 77, 733, 1106
BspCNI CTCAG 1 cut(s) 697
BspLI GGNNCC 4 cut(s) 76, 539, 675, 1208
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 5 cut(s) 532, 545, 560, 566, 950
BsrDI GCAATG 2 cut(s) 758, 955
BsrI ACTGG 3 cut(s) 1210, 1256, 1283
BssECI CCNNGG 1 cut(s) 341
BssMI GATC 4 cut(s) 537, 565, 571, 955
Bst2UI CCWGG 4 cut(s) 342, 351, 678, 787
BstC8I GCNNGC 4 cut(s) 306, 423, 804, 1104
BstDEI CTNAG 2 cut(s) 122, 684
BstF5I GGATG 5 cut(s) 359, 364, 699, 721, 1247
BstKTI GATC 4 cut(s) 540, 568, 574, 958
BstMAI GTCTC 3 cut(s) 58, 88, 405
BstMBI GATC 4 cut(s) 537, 565, 571, 955
BstMWI GCNNNNNNNGC 2 cut(s) 314, 808
BstNI CCWGG 4 cut(s) 342, 351, 678, 787
BstSCI CCNGG 4 cut(s) 340, 349, 676, 785
BstSFI CTRYAG 2 cut(s) 222, 489
BstSLI GKGCMC 1 cut(s) 634
BstV1I GCAGC 4 cut(s) 88, 380, 829, 1241
BstX2I RGATCY 3 cut(s) 537, 571, 955
BstYI RGATCY 3 cut(s) 537, 571, 955
BsuRI GGCC 3 cut(s) 77, 733, 1106
BtsCI GGATG 5 cut(s) 359, 364, 699, 721, 1247
BtsIMutI CAGTG 4 cut(s) 21, 1120, 1256, 1276
Cac8I GCNNGC 4 cut(s) 306, 423, 804, 1104
CaiI CAGNNNCTG 1 cut(s) 1108
Cfr13I GGNCC 4 cut(s) 75, 1105, 1124, 1207
CviAII CATG 6 cut(s) 407, 518, 627, 668, 1048, 1393
DdeI CTNAG 2 cut(s) 122, 684
DpnI GATC 4 cut(s) 539, 567, 573, 957
DpnII GATC 4 cut(s) 537, 565, 571, 955
Eco24I GRGCYC 1 cut(s) 1055
Eco47I GGWCC 2 cut(s) 1124, 1207
Eco57I CTGAAG 1 cut(s) 1280
EcoO109I RGGNCCY 1 cut(s) 1105
EcoRII CCWGG 4 cut(s) 340, 349, 676, 785
EcoT22I ATGCAT 1 cut(s) 622
EcoT38I GRGCYC 1 cut(s) 1055
FaeI CATG 6 cut(s) 410, 521, 630, 671, 1051, 1396
FatI CATG 6 cut(s) 406, 517, 626, 667, 1047, 1392
Fnu4HI GCNGC 5 cut(s) 102, 369, 672, 843, 1230
FokI GGATG 5 cut(s) 366, 371, 706, 728, 1254
FriOI GRGCYC 1 cut(s) 1055
Fsp4HI GCNGC 5 cut(s) 102, 369, 672, 843, 1230
FspBI CTAG 3 cut(s) 513, 611, 708
GluI GCNGC 5 cut(s) 102, 369, 672, 843, 1230
GsaI CCCAGC 1 cut(s) 815
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 3 cut(s) 77, 733, 1106
Hin1II CATG 6 cut(s) 410, 521, 630, 671, 1051, 1396
HincII GTYRAC 4 cut(s) 915, 1045, 1153, 1348
HindII GTYRAC 4 cut(s) 915, 1045, 1153, 1348
HinfI GANTC 1 cut(s) 743
HpaI GTTAAC 1 cut(s) 1348
HphI GGTGA 2 cut(s) 209, 222
Hpy166II GTNNAC 7 cut(s) 274, 915, 1045, 1127, 1153, 1222, 1348
Hpy188I TCNGA 3 cut(s) 142, 687, 903
Hpy188III TCNNGA 5 cut(s) 463, 513, 569, 611, 740
Hpy8I GTNNAC 7 cut(s) 274, 915, 1045, 1127, 1153, 1222, 1348
HpyAV CCTTC 2 cut(s) 243, 674
HpyCH4IV ACGT 1 cut(s) 765
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 808
HpyF3I CTNAG 2 cut(s) 122, 684
HpySE526I ACGT 1 cut(s) 765
Hsp92II CATG 6 cut(s) 410, 521, 630, 671, 1051, 1396
KspAI GTTAAC 1 cut(s) 1348
Kzo9I GATC 4 cut(s) 537, 565, 571, 955
LmnI GCTCC 1 cut(s) 679
Lsp1109I GCAGC 4 cut(s) 88, 380, 829, 1241
LweI GCATC 4 cut(s) 88, 113, 663, 1393
MaeI CTAG 3 cut(s) 513, 611, 708
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 2 cut(s) 197, 1165
MalI GATC 4 cut(s) 539, 567, 573, 957
MboI GATC 4 cut(s) 537, 565, 571, 955
MboII GAAGA 3 cut(s) 99, 1273, 1304
MfeI CAATTG 1 cut(s) 1097
MflI RGATCY 3 cut(s) 537, 571, 955
MhlI GDGCHC 2 cut(s) 634, 1055
MnlI CCTC 8 cut(s) 65, 261, 459, 528, 585, 1186, 1197, 1284
Mph1103I ATGCAT 1 cut(s) 622
MroXI GAANNNNTTC 3 cut(s) 479, 897, 969
MseI TTAA 2 cut(s) 26, 1347
MslI CAYNNNNRTG 3 cut(s) 109, 625, 1240
MspR9I CCNGG 4 cut(s) 342, 351, 678, 787
MunI CAATTG 1 cut(s) 1097
Mva1269I GAATGC 1 cut(s) 620
MvaI CCWGG 4 cut(s) 342, 351, 678, 787
MwoI GCNNNNNNNGC 2 cut(s) 314, 808
NdeII GATC 4 cut(s) 537, 565, 571, 955
NlaIII CATG 6 cut(s) 410, 521, 630, 671, 1051, 1396
NlaIV GGNNCC 4 cut(s) 76, 539, 675, 1208
NmuCI GTSAC 1 cut(s) 197
NsiI ATGCAT 1 cut(s) 622
PctI GAATGC 1 cut(s) 620
PdmI GAANNNNTTC 3 cut(s) 479, 897, 969
PfeI GAWTC 1 cut(s) 743
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 5 cut(s) 103, 370, 673, 844, 1231
Psp6I CCWGG 4 cut(s) 340, 349, 676, 785
PspFI CCCAGC 1 cut(s) 811
PspGI CCWGG 4 cut(s) 340, 349, 676, 785
PspN4I GGNNCC 4 cut(s) 76, 539, 675, 1208
PspPI GGNCC 4 cut(s) 75, 1105, 1124, 1207
PsrI GAACNNNNNNTAC 2 cut(s) 703, 735
PstI CTGCAG 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 1108
PsuI RGATCY 3 cut(s) 537, 571, 955
RseI CAYNNNNRTG 3 cut(s) 109, 625, 1240
SaqAI TTAA 2 cut(s) 26, 1347
SatI GCNGC 5 cut(s) 102, 369, 672, 843, 1230
Sau3AI GATC 4 cut(s) 537, 565, 571, 955
Sau96I GGNCC 4 cut(s) 75, 1105, 1124, 1207
ScrFI CCNGG 4 cut(s) 342, 351, 678, 787
SduI GDGCHC 2 cut(s) 634, 1055
SfaNI GCATC 4 cut(s) 88, 113, 663, 1393
SfcI CTRYAG 2 cut(s) 222, 489
SinI GGWCC 2 cut(s) 1124, 1207
SmiMI CAYNNNNRTG 3 cut(s) 109, 625, 1240
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SsiI CCGC 2 cut(s) 160, 671
SspI AATATT 2 cut(s) 646, 997
SspMI CTAG 3 cut(s) 513, 611, 708
StyD4I CCNGG 4 cut(s) 340, 349, 676, 785
TaiI ACGT 1 cut(s) 768
TaqI TCGA 2 cut(s) 236, 1315
TauI GCSGC 1 cut(s) 674
TfiI GAWTC 1 cut(s) 743
Tru1I TTAA 2 cut(s) 26, 1347
Tru9I TTAA 2 cut(s) 26, 1347
TscAI CASTG 4 cut(s) 21, 1120, 1263, 1283
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 4 cut(s) 101, 368, 842, 1229
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 7 cut(s) 143, 472, 656, 846, 906, 1063, 1224
TspGWI ACGGA 2 cut(s) 1073, 1354
TspRI CASTG 4 cut(s) 21, 1120, 1263, 1283
Van91I CCANNNNNTGG 1 cut(s) 590
VpaK11BI GGWCC 2 cut(s) 1124, 1207
XapI RAATTY 1 cut(s) 149
XbaI TCTAGA 2 cut(s) 512, 610
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XmnI GAANNNNTTC 3 cut(s) 479, 897, 969
XspI CTAG 3 cut(s) 513, 611, 708
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.