Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0018782

Physical Location & Seq

Genomic Coordinates Forward (+)

13018830 .. 13025741

Gene Structure 6912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20900.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCAGCTGAATGCAGTCGCTTTCTTCGCAACCAAAGGTGCGAAGAGGATCAAATTACTCGTCTTCCTCAGGATAGTAAATAAAAAATGTGGAGGAGGCTTCCAAAAGGCAGTGGCAGCAGAAGCAGCCAATCTCTTGGAGGCCACAGGTCCCAGTGGGATCAAACCAAGTGGTACTTTAAAGATATGTTTAGAGGAAGAGAATGAACTGAAAACAGCAGGTTCATCAATTGATGAATCTGAAGAAAATGAGGATGCAAAGTTTGCAAGACTATTGCACGAAGAATACTGGAAATCGATGAAACAAAAAAAAAGAACCTCTACCACATCCGGAGGCATTGGTGTTCACGTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

119

Amino Acids

12.77

Weight (kDa)

9.14

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018782)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20900
rosa_chinensis	RchiOBHm_Chr2g0113541
rosa_multiflora	Rmu_sc0000929.1_g000047 Rmu_sc0007415.1_g000024
rosa_roxburghii	Rroxscaffold_2G00129170 Rroxscaffold_2G00129980 Rroxscaffold_3G00251620 Rroxscaffold_7G00190120
rosa_samantha	Rh2CG247100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	329
AclWI	GGATC	2 cut(s)	56, 167
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	175
AjiI	CACGTC	1 cut(s)	349
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
AlwI	GGATC	2 cut(s)	56, 167
Aor13HI	TCCGGA	1 cut(s)	329
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	3 cut(s)	4, 116, 125
ArsI	GACNNNNNNTTYG	2 cut(s)	45, 77
AspS9I	GGNCC	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	149
AxyI	CCTNAGG	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	55
BbvI	GCAGC	3 cut(s)	16, 128, 137
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	3 cut(s)	5, 117, 126
BlsI	GCNGC	3 cut(s)	6, 118, 127
Bme18I	GGWCC	1 cut(s)	149
BmgBI	CACGTC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	149
BmiI	GGNNCC	1 cut(s)	151
BmrI	ACTGGG	1 cut(s)	147
BmsI	GCATC	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	296
BsaWI	WCCGGW	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	153, 293
Bse21I	CCTNAGG	1 cut(s)	68
BseAI	TCCGGA	1 cut(s)	329
BseCI	ATCGAT	1 cut(s)	296
BseGI	GGATG	2 cut(s)	259, 326
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	2 cut(s)	153, 293
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	3 cut(s)	16, 128, 137
BshFI	GGCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	2 cut(s)	135, 335
BsmFI	GGGAC	2 cut(s)	135, 335
BsmI	GAATGC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	143
Bsp13I	TCCGGA	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	48, 159
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	81
BspDI	ATCGAT	1 cut(s)	296
BspEI	TCCGGA	1 cut(s)	329
BspLI	GGNNCC	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	2 cut(s)	56, 167
BsrI	ACTGG	2 cut(s)	153, 293
BssMI	GATC	2 cut(s)	48, 159
Bst6I	CTCTTC	2 cut(s)	38, 192
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	259, 326
BstKTI	GATC	2 cut(s)	51, 162
BstMBI	GATC	2 cut(s)	48, 159
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 116, 122, 125, 263
BstV1I	GCAGC	3 cut(s)	16, 128, 137
BstV2I	GAAGAC	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	136
Bsu15I	ATCGAT	1 cut(s)	296
Bsu36I	CCTNAGG	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	296
BtrI	CACGTC	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	259, 326
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	117, 160
BveI	ACCTGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	149
ClaI	ATCGAT	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	174
CspCI	CAANNNNNGTGG	2 cut(s)	151, 186
CviJI	RGCY	4 cut(s)	7, 99, 128, 143
CviKI_1	RGCY	4 cut(s)	7, 99, 128, 143
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	2 cut(s)	50, 161
DpnII	GATC	2 cut(s)	48, 159
DraI	TTTAAA	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	38, 192
EarI	CTCTTC	2 cut(s)	38, 192
Eco47I	GGWCC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	149
FaiI	YATR	1 cut(s)	187
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
FaqI	GGGAC	2 cut(s)	135, 335
Fnu4HI	GCNGC	3 cut(s)	5, 117, 126
FokI	GGATG	2 cut(s)	266, 313
Fsp4HI	GCNGC	3 cut(s)	5, 117, 126
GluI	GCNGC	3 cut(s)	5, 117, 126
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	1 cut(s)	330
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	1 cut(s)	330
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	2 cut(s)	70, 330
Hpy8I	GTNNAC	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	348
HpyCH4V	TGCA	5 cut(s)	4, 14, 257, 266, 277
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 116, 122, 125, 263
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	348
Kpn2I	TCCGGA	1 cut(s)	329
Kzo9I	GATC	2 cut(s)	48, 159
LpnPI	CCDG	6 cut(s)	55, 132, 166, 204, 274, 343
Lsp1109I	GCAGC	3 cut(s)	16, 128, 137
LweI	GCATC	1 cut(s)	244
MaeII	ACGT	1 cut(s)	348
MalI	GATC	2 cut(s)	50, 161
MboI	GATC	2 cut(s)	48, 159
MboII	GAAGA	6 cut(s)	16, 55, 55, 209, 254, 293
MfeI	CAATTG	1 cut(s)	228
MluCI	AATT	2 cut(s)	53, 228
MnlI	CCTC	9 cut(s)	39, 77, 86, 89, 133, 187, 244, 326, 328
MroI	TCCGGA	1 cut(s)	329
MseI	TTAA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	1 cut(s)	330
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	16
MwoI	GCNNNNNNNGC	5 cut(s)	26, 116, 122, 125, 263
NdeII	GATC	2 cut(s)	48, 159
NlaIV	GGNNCC	1 cut(s)	151
PctI	GAATGC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	3 cut(s)	6, 118, 127
PpuMI	RGGWCCY	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	149
PspPPI	RGGWCCY	1 cut(s)	149
PvuII	CAGCTG	1 cut(s)	7
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	3 cut(s)	5, 117, 126
Sau3AI	GATC	2 cut(s)	48, 159
Sau96I	GGNCC	1 cut(s)	149
SetI	ASST	6 cut(s)	9, 40, 151, 223, 320, 351
SfaNI	GCATC	1 cut(s)	244
SinI	GGWCC	1 cut(s)	149
Sse9I	AATT	2 cut(s)	53, 228
TaiI	ACGT	1 cut(s)	351
TaqI	TCGA	1 cut(s)	296
TasI	AATT	2 cut(s)	53, 228
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	2 cut(s)	117, 160
TseI	GCWGC	3 cut(s)	4, 116, 125
TspDTI	ATGAA	4 cut(s)	213, 219, 249, 314
TspRI	CASTG	2 cut(s)	117, 160
VpaK11BI	GGWCC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.