Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0018782

Physical Location & Seq

Genomic Coordinates Reverse (-)

30159553 .. 30162645

Gene Structure 3093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00190120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAAGTCTACCCGGGTTTTTCGGACGAGAGGACATTTCGGTAGAGAAGGCATACTTTGCTTCGATGTCGCAGAGGTCTACTACGGTGAAGAAACACACATTATCCCCGCCGATAGCTTAGAAGGAAAATGTGAAGTTAGAAAGAGGAGTGATCTTCCGAATGTGATGCTCCTGCAATGTTTGAGCATATTTTCTTTTGTGAGCATTTATATGATCCTTCTAAAGGGTCTCTTAAGCGATTCGGTTCACATCAAGAAGAAAAAGGGCAAATGCAAAGAAGGAGAAGATGTTCCGAAGTTGAGAAACGAGAGAGATGATTATGAACACAAACGCCTAGCCACTTTGGATATATTTGCTTTGGATGTGGTGGCCTCGTCGAAGGTTTGCATCAGTGGTGTTTCGGTAACGAAGTGGGCAATCGAGTATGAAGAGCCGGCTGGACAGGCTTTCCAACTCAACCATCACGAGTCCAAGGTGTTCATTAATAATTGCAATGTCATCTTGAAGGCCGTCATGGACAAATGTGGAGATATGGATGATTGCATCTCCACTACTGAAGCCAATGATTTAGCCTCGTCACTTGATGAGAAGTTTTCAATTATGACGGTGAGGACTGGGAAGGAAGACATTAGAGCCATAACAAGGATGTCCACTCTGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

220

Amino Acids

24.85

Weight (kDa)

6.6

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018782)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20900
rosa_chinensis	RchiOBHm_Chr2g0113541
rosa_multiflora	Rmu_sc0000929.1_g000047 Rmu_sc0007415.1_g000024
rosa_roxburghii	Rroxscaffold_2G00129170 Rroxscaffold_2G00129980 Rroxscaffold_3G00251620 Rroxscaffold_7G00190120
rosa_samantha	Rh2CG247100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	8, 78
AciI	CCGC	2 cut(s)	108, 658
AclWI	GGATC	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	576
AfiI	CCNNNNNNNGG	3 cut(s)	223, 642, 657
AflII	CTTAAG	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	505, 597
AloI	GAACNNNNNNTCC	2 cut(s)	273, 305
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	12
AoxI	GGCC	2 cut(s)	369, 507
AseI	ATTAAT	1 cut(s)	483
Asp700I	GAANNNNTTC	1 cut(s)	288
AsuC2I	CCSGG	2 cut(s)	13, 14
AsuHPI	GGTGA	2 cut(s)	98, 619
AvaI	CYCGRG	1 cut(s)	12
BauI	CACGAG	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	630
BccI	CCATC	1 cut(s)	468
BceAI	ACGGC	1 cut(s)	494
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BcnI	CCSGG	2 cut(s)	13, 14
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	1 cut(s)	335
BfrI	CTTAAG	1 cut(s)	232
Bme1390I	CCNGG	2 cut(s)	13, 14
BmeT110I	CYCGRG	1 cut(s)	12
BmrFI	CCNGG	2 cut(s)	13, 14
BmrI	ACTGGG	1 cut(s)	624
BmsI	GCATC	3 cut(s)	156, 396, 552
BmuI	ACTGGG	1 cut(s)	624
BpiI	GAAGAC	1 cut(s)	630
BpuMI	CCSGG	2 cut(s)	13, 14
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	12, 471
BsaXI	ACNNNNNCTCC	2 cut(s)	273, 303
Bsc4I	CCNNNNNNNGG	3 cut(s)	223, 642, 657
Bse118I	RCCGGY	1 cut(s)	433
Bse1I	ACTGG	1 cut(s)	619
Bse3DI	GCAATG	2 cut(s)	182, 499
BseDI	CCNNGG	2 cut(s)	12, 471
BseGI	GGATG	3 cut(s)	367, 541, 651
BseLI	CCNNNNNNNGG	3 cut(s)	223, 642, 657
BseMI	GCAATG	2 cut(s)	182, 499
BseNI	ACTGG	1 cut(s)	619
BseRI	GAGGAG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	371, 509
BsiHKCI	CYCGRG	1 cut(s)	12
BsiSI	CCGG	2 cut(s)	13, 434
BslI	CCNNNNNNNGG	3 cut(s)	223, 642, 657
BsmAI	GTCTC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	371, 509
Bso31I	GGTCTC	1 cut(s)	233
BsoBI	CYCGRG	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	151, 213
BspACI	CCGC	2 cut(s)	108, 658
BspANI	GGCC	2 cut(s)	371, 509
BspPI	GGATC	1 cut(s)	208
BspQI	GCTCTTC	1 cut(s)	423
BspTI	CTTAAG	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	182, 499
BsrFI	RCCGGY	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	619
BssAI	RCCGGY	1 cut(s)	433
BssECI	CCNNGG	2 cut(s)	12, 471
BssMI	GATC	2 cut(s)	151, 213
BssSI	CACGAG	1 cut(s)	464
BssT1I	CCWWGG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	86, 607
Bst6I	CTCTTC	1 cut(s)	423
BstAFI	CTTAAG	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	1 cut(s)	118
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	3 cut(s)	367, 541, 651
BstKTI	GATC	2 cut(s)	154, 216
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	2 cut(s)	151, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 443
BstSCI	CCNGG	2 cut(s)	11, 12
BstV2I	GAAGAC	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	371, 509
BtsCI	GGATG	3 cut(s)	367, 541, 651
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	435
Cfr10I	RCCGGY	1 cut(s)	433
Cfr9I	CCCGGG	1 cut(s)	12
CviAII	CATG	1 cut(s)	514
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	2 cut(s)	153, 215
DpnII	GATC	2 cut(s)	151, 213
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	576
Eco88I	CYCGRG	1 cut(s)	12
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	1 cut(s)	517
FalI	AAGNNNNNCTT	4 cut(s)	39, 71, 215, 247
FatI	CATG	1 cut(s)	513
FauI	CCCGC	1 cut(s)	115
FblI	GTMKAC	2 cut(s)	8, 78
FokI	GGATG	3 cut(s)	374, 548, 658
FspBI	CTAG	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	371, 509
HapII	CCGG	2 cut(s)	13, 434
Hin1II	CATG	1 cut(s)	517
HinfI	GANTC	2 cut(s)	239, 467
HpaII	CCGG	2 cut(s)	13, 434
HphI	GGTGA	2 cut(s)	98, 619
Hpy166II	GTNNAC	4 cut(s)	9, 79, 247, 651
Hpy188I	TCNGA	3 cut(s)	24, 159, 294
Hpy188III	TCNNGA	3 cut(s)	253, 464, 502
Hpy8I	GTNNAC	4 cut(s)	9, 79, 247, 651
Hpy99I	CGWCG	1 cut(s)	379
HpyAV	CCTTC	7 cut(s)	41, 116, 227, 272, 373, 499, 613
HpyCH4III	ACNGT	2 cut(s)	86, 607
HpyCH4V	TGCA	5 cut(s)	175, 273, 387, 492, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 443
HpyF3I	CTNAG	1 cut(s)	118
Hsp92II	CATG	1 cut(s)	517
KroI	GCCGGC	1 cut(s)	433
KroNI	GCCGGC	1 cut(s)	435
Kzo9I	GATC	2 cut(s)	151, 213
LguI	GCTCTTC	1 cut(s)	423
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	6 cut(s)	26, 185, 423, 428, 447, 600
LweI	GCATC	3 cut(s)	156, 396, 552
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	2 cut(s)	403, 576
MalI	GATC	2 cut(s)	153, 215
MboI	GATC	2 cut(s)	151, 213
MboII	GAAGA	6 cut(s)	101, 146, 268, 296, 440, 635
MluCI	AATT	2 cut(s)	487, 597
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	6 cut(s)	23, 67, 138, 382, 583, 603
MroNI	GCCGGC	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	2 cut(s)	233, 483
MslI	CAYNNNNRTG	1 cut(s)	209
MspCI	CTTAAG	1 cut(s)	232
MspI	CCGG	2 cut(s)	13, 434
MspR9I	CCNGG	2 cut(s)	13, 14
MwoI	GCNNNNNNNGC	2 cut(s)	57, 443
NaeI	GCCGGC	1 cut(s)	435
NciI	CCSGG	2 cut(s)	13, 14
NdeII	GATC	2 cut(s)	151, 213
NgoMIV	GCCGGC	1 cut(s)	433
NlaIII	CATG	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	576
PciSI	GCTCTTC	1 cut(s)	423
PdiI	GCCGGC	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	239
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PshBI	ATTAAT	1 cut(s)	483
RseI	CAYNNNNRTG	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	233, 483
Sau3AI	GATC	2 cut(s)	151, 213
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	2 cut(s)	13, 14
SetI	ASST	4 cut(s)	78, 119, 384, 477
SfaNI	GCATC	3 cut(s)	156, 396, 552
SmaI	CCCGGG	1 cut(s)	14
SmiMI	CAYNNNNRTG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	487, 597
SsiI	CCGC	2 cut(s)	108, 658
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	11, 12
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	2 cut(s)	86, 607
TaqI	TCGA	3 cut(s)	63, 377, 420
TasI	AATT	2 cut(s)	487, 597
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	2 cut(s)	233, 483
Tru9I	TTAA	2 cut(s)	233, 483
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	576
Tsp45I	GTSAC	1 cut(s)	576
TspDTI	ATGAA	4 cut(s)	17, 336, 441, 469
TspMI	CCCGGG	1 cut(s)	12
TspRI	CASTG	1 cut(s)	397
Vha464I	CTTAAG	1 cut(s)	232
VspI	ATTAAT	1 cut(s)	483
XagI	CCTNNNNNAGG	1 cut(s)	221
XmaI	CCCGGG	1 cut(s)	12
XmiI	GTMKAC	2 cut(s)	8, 78
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.