Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018782

Physical Location & Seq

Genomic Coordinates Forward (+)

66063902 .. 66065207

Gene Structure 1306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGACGTGCAGCAGCTGGTGCAGCCACCCTCTTGGCAATCAAAGGTAACAAGGGGACCAAACCACTTGTCTTCCTCAGGGATGATGAACAAAAAAGTGAACGGGGCTCCCAAAAGGCAGCAGCAGCAGAAGCAGCCAATCTCTCTGAGACCACAGGTCCCAGTGGGATCAAACCAATCAAGGCTAGGAGTTCTTCTTCTTGCTATCTGGGCGCTTTCAAACTCAACCATCCCGAGGCATCGGTGTTTATCAACAACTGCAATGTAATCTCAAGGGCTGTGATGGAGAAATGTGCAGATGCCGATGATTGCATCTCAACTACAGATGCTGCTGAATTAGCCGCATCACTTGATGAGAAGGTGAAGAATGATTTGCCACTGCCAGGGCAAGTAGATTTCATTAATGGAGGGCCTTCCCAACATGTTTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

144

Amino Acids

14.99

Weight (kDa)

6.1

Isoelectric Point (pI)

22.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018782)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20900
rosa_chinensis	RchiOBHm_Chr2g0113541
rosa_multiflora	Rmu_sc0000929.1_g000047 Rmu_sc0007415.1_g000024
rosa_roxburghii	Rroxscaffold_2G00129170 Rroxscaffold_2G00129980 Rroxscaffold_3G00251620 Rroxscaffold_7G00190120
rosa_samantha	Rh2CG247100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	235, 383
AflIII	ACRYGT	1 cut(s)	421
AgsI	TTSAA	1 cut(s)	220
AhdI	GACNNNNNGTC	1 cut(s)	156
AjiI	CACGTC	1 cut(s)	8
AjnI	CCWGG	1 cut(s)	382
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	176
AlwNI	CAGNNNCTG	2 cut(s)	17, 329
Ama87I	CYCGRG	1 cut(s)	233
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	8 cut(s)	11, 14, 23, 119, 122, 125, 134, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AseI	ATTAAT	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	3 cut(s)	57, 158, 410
AsuHPI	GGTGA	1 cut(s)	373
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	2 cut(s)	57, 158
AxyI	CCTNAGG	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	64
BbvI	GCAGC	8 cut(s)	23, 26, 35, 131, 134, 137, 146, 316
BccI	CCATC	2 cut(s)	237, 277
BciT130I	CCWGG	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	1 cut(s)	186
BfmI	CTRYAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	216
BisI	GCNGC	9 cut(s)	12, 15, 24, 120, 123, 126, 135, 330, 342
BlsI	GCNGC	9 cut(s)	13, 16, 25, 121, 124, 127, 136, 331, 343
Bme1390I	CCNGG	1 cut(s)	384
Bme18I	GGWCC	2 cut(s)	57, 158
BmeRI	GACNNNNNGTC	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	233
BmgBI	CACGTC	1 cut(s)	8
BmgT120I	GGNCC	3 cut(s)	57, 158, 410
BmiI	GGNNCC	3 cut(s)	58, 109, 160
BmrFI	CCNGG	1 cut(s)	384
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	5 cut(s)	248, 289, 316, 321, 353
BmuI	ACTGGG	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	256
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	234, 383
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 383
Bse1I	ACTGG	1 cut(s)	162
Bse21I	CCTNAGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	2 cut(s)	234, 383
BseGI	GGATG	2 cut(s)	88, 229
BseLI	CCNNNNNNNGG	2 cut(s)	235, 383
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	2 cut(s)	91, 138
BseNI	ACTGG	1 cut(s)	162
BseXI	GCAGC	8 cut(s)	23, 26, 35, 131, 134, 137, 146, 316
BsgI	GTGCAG	3 cut(s)	30, 42, 315
BshFI	GGCC	1 cut(s)	412
BsiHKCI	CYCGRG	1 cut(s)	233
BslFI	GGGAC	3 cut(s)	18, 70, 144
BslI	CCNNNNNNNGG	2 cut(s)	235, 383
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	3 cut(s)	18, 70, 144
BsnI	GGCC	1 cut(s)	412
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	168
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	2 cut(s)	90, 139
BspLI	GGNNCC	3 cut(s)	58, 109, 160
BspPI	GGATC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	162
BssECI	CCNNGG	2 cut(s)	234, 383
BssMI	GATC	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	384
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstDEI	CTNAG	2 cut(s)	77, 147
BstF5I	GGATG	2 cut(s)	88, 229
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 23, 125, 131, 134, 210, 338
BstNI	CCWGG	1 cut(s)	384
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	8 cut(s)	23, 26, 35, 131, 134, 137, 146, 316
BstV2I	GAAGAC	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	34
Bsu36I	CCTNAGG	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	412
BtrI	CACGTC	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	88, 229
BtsI	GCAGTG	1 cut(s)	377
BtsIMutI	CAGTG	2 cut(s)	169, 377
CaiI	CAGNNNCTG	2 cut(s)	17, 329
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	3 cut(s)	57, 158, 410
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	8 cut(s)	17, 26, 108, 137, 185, 278, 341, 412
CviKI_1	RGCY	8 cut(s)	17, 26, 108, 137, 185, 278, 341, 412
DdeI	CTNAG	2 cut(s)	77, 147
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
DriI	GACNNNNNGTC	1 cut(s)	156
Eam1105I	GACNNNNNGTC	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	110
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	57, 158
Eco81I	CCTNAGG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	233
EcoO109I	RGGNCCY	2 cut(s)	158, 410
EcoRII	CCWGG	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	110
FaeI	CATG	1 cut(s)	425
FaiI	YATR	1 cut(s)	423
FaqI	GGGAC	3 cut(s)	18, 70, 144
FatI	CATG	1 cut(s)	421
Fnu4HI	GCNGC	9 cut(s)	12, 15, 24, 120, 123, 126, 135, 330, 342
FokI	GGATG	2 cut(s)	95, 216
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	9 cut(s)	12, 15, 24, 120, 123, 126, 135, 330, 342
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	9 cut(s)	12, 15, 24, 120, 123, 126, 135, 330, 342
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	412
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	425
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	2 cut(s)	148, 434
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	101
HpyAV	CCTTC	2 cut(s)	352, 423
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	5 cut(s)	11, 23, 261, 296, 312
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 23, 125, 131, 134, 210, 338
HpyF3I	CTNAG	2 cut(s)	77, 147
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	1 cut(s)	425
HspAI	GCGC	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	7 cut(s)	3, 64, 141, 175, 194, 369, 396
Lsp1109I	GCAGC	8 cut(s)	23, 26, 35, 131, 134, 137, 146, 316
LweI	GCATC	5 cut(s)	248, 289, 316, 321, 353
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	4 cut(s)	64, 186, 189, 376
MhlI	GDGCHC	1 cut(s)	110
MluCI	AATT	1 cut(s)	335
MnlI	CCTC	4 cut(s)	41, 86, 229, 401
MseI	TTAA	1 cut(s)	402
MspA1I	CMGCKG	1 cut(s)	17
MspR9I	CCNGG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	7 cut(s)	20, 23, 125, 131, 134, 210, 338
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	1 cut(s)	425
NlaIV	GGNNCC	3 cut(s)	58, 109, 160
NspI	RCATGY	1 cut(s)	425
PciI	ACATGT	1 cut(s)	421
PkrI	GCNGC	9 cut(s)	13, 16, 25, 121, 124, 127, 136, 331, 343
PpuMI	RGGWCCY	1 cut(s)	158
PscI	ACATGT	1 cut(s)	421
PshBI	ATTAAT	1 cut(s)	402
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	3 cut(s)	58, 109, 160
PspPI	GGNCC	3 cut(s)	57, 158, 410
PspPPI	RGGWCCY	1 cut(s)	158
PstNI	CAGNNNCTG	2 cut(s)	17, 329
PvuII	CAGCTG	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	9 cut(s)	12, 15, 24, 120, 123, 126, 135, 330, 342
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	3 cut(s)	57, 158, 410
ScrFI	CCNGG	1 cut(s)	384
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	5 cut(s)	10, 19, 49, 160, 363
SfaNI	GCATC	5 cut(s)	248, 289, 316, 321, 353
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	2 cut(s)	57, 158
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	1 cut(s)	335
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	186
StyD4I	CCNGG	1 cut(s)	382
TaiI	ACGT	1 cut(s)	10
TasI	AATT	1 cut(s)	335
TauI	GCSGC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	2 cut(s)	169, 384
TseI	GCWGC	8 cut(s)	11, 14, 23, 119, 122, 125, 134, 329
TspDTI	ATGAA	2 cut(s)	102, 388
TspRI	CASTG	2 cut(s)	169, 384
VpaK11BI	GGWCC	2 cut(s)	57, 158
VspI	ATTAAT	1 cut(s)	402
XceI	RCATGY	1 cut(s)	425
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.