Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018782

Physical Location & Seq

Genomic Coordinates Reverse (-)

65021929 .. 65023285

Gene Structure 1357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00129170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTTCATAATCGGTATCTCAGAGTCAAGGCTAGGAGTTCTTCTTCTTGCTATCTGGGCGCTTTCAAACTCAACCATCCCGAGGCATCGGTGTTTATCAACAACTGCAATGTAATCTCAAGGGCTGTGATGGAGAAATGTGCAGATGCCGATGATTGCATCTCAACTACAGATGCTGCTGAATTAGCCGCATCACTTGATGAGAAGGTGAAGAATGATTTGCCACTGCCAGGGCAAGTAGATTTCATTAATGGAGGGCCTTCCCAACATCCTCTTTTCTTGCGCGGGCGTGCCAGCACCGTCGGGTGCGGTCGTCGGGGGTGTCCCTTGACCCGACTTCTTTCAAGAGATTGTGGACGAGGAGAGCACCAACCTCGTCGTGGATTTTTGTGCCTCGTGGCGAGGACTTTTGCCGAGCTTCTTGAAAATCACAATCGATACTTGATGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000910 GO:0003006 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006349 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008356 GO:0009292 GO:0009294 GO:0009790 GO:0009791 GO:0009793 GO:0009909 GO:0009910 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010216 GO:0010424 GO:0010468 GO:0016740 GO:0016741 GO:0019222 GO:0022402 GO:0022414 GO:0032259 GO:0032501 GO:0032502 GO:0032776 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0044764 GO:0046483 GO:0048316 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051301 GO:0051704 GO:0060255 GO:0061458 GO:0061640 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:1901360 GO:1903047 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko05206 map00270 map01100 map05206

Pfam Domains

Protein Families

BAH DNA_methylase DNMT1-RFD

Protein Analysis

150

Amino Acids

16.59

Weight (kDa)

8.88

Isoelectric Point (pI)

33.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018782)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20900
rosa_chinensis	RchiOBHm_Chr2g0113541
rosa_multiflora	Rmu_sc0000929.1_g000047 Rmu_sc0007415.1_g000024
rosa_roxburghii	Rroxscaffold_2G00129170 Rroxscaffold_2G00129980 Rroxscaffold_3G00251620 Rroxscaffold_7G00190120
rosa_samantha	Rh2CG247100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	285
AciI	CCGC	3 cut(s)	189, 285, 309
AfiI	CCNNNNNNNGG	3 cut(s)	82, 230, 380
AgsI	TTSAA	3 cut(s)	67, 345, 425
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	1 cut(s)	418
AluI	AGCT	1 cut(s)	418
Alw21I	GWGCWC	1 cut(s)	369
AlwNI	CAGNNNCTG	1 cut(s)	176
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	257
ApeKI	GCWGC	1 cut(s)	176
AseI	ATTAAT	1 cut(s)	249
AspLEI	GCGC	2 cut(s)	62, 285
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	220
AvaI	CYCGRG	1 cut(s)	80
BauI	CACGAG	1 cut(s)	395
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	2 cut(s)	84, 124
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BciT130I	CCWGG	1 cut(s)	231
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	63
BisI	GCNGC	2 cut(s)	177, 189
BlsI	GCNGC	2 cut(s)	178, 190
Bme1390I	CCNGG	1 cut(s)	231
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	5 cut(s)	95, 136, 163, 168, 200
BpuEI	CTTGAG	1 cut(s)	103
Bsa29I	ATCGAT	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	81, 230
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 230, 380
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	81, 230
BseGI	GGATG	2 cut(s)	76, 268
BseLI	CCNNNNNNNGG	3 cut(s)	82, 230, 380
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	34
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	163
BsgI	GTGCAG	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	285
Bsh1285I	CGRYCG	1 cut(s)	313
BshFI	GGCC	1 cut(s)	259
BshVI	ATCGAT	1 cut(s)	436
BsiEI	CGRYCG	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	309
BslI	CCNNNNNNNGG	3 cut(s)	82, 230, 380
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	259
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	369
BspACI	CCGC	3 cut(s)	189, 285, 309
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	1 cut(s)	33
BspDI	ATCGAT	1 cut(s)	436
BspFNI	CGCG	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	81, 230
BssSI	CACGAG	1 cut(s)	395
Bst2BI	CACGAG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	301
BstC8I	GCNNGC	3 cut(s)	287, 291, 295
BstDEI	CTNAG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	76, 268
BstFNI	CGCG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	2 cut(s)	62, 285
BstMCI	CGRYCG	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 185
BstNI	CCWGG	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	1 cut(s)	163
Bsu15I	ATCGAT	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	259
BsuTUI	ATCGAT	1 cut(s)	436
BtsCI	GGATG	2 cut(s)	76, 268
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
Cac8I	GCNNGC	3 cut(s)	287, 291, 295
CaiI	CAGNNNCTG	1 cut(s)	176
CfoI	GCGC	2 cut(s)	62, 285
Cfr13I	GGNCC	1 cut(s)	257
ClaI	ATCGAT	1 cut(s)	436
CviJI	RGCY	5 cut(s)	32, 125, 188, 259, 418
CviKI_1	RGCY	5 cut(s)	32, 125, 188, 259, 418
DdeI	CTNAG	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	80
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	229
FaiI	YATR	1 cut(s)	9
FaqI	GGGAC	1 cut(s)	309
FauI	CCCGC	1 cut(s)	278
Fnu4HI	GCNGC	2 cut(s)	177, 189
FokI	GGATG	2 cut(s)	63, 255
Fsp4HI	GCNGC	2 cut(s)	177, 189
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	2 cut(s)	61, 284
GluI	GCNGC	2 cut(s)	177, 189
HaeII	RGCGCY	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	259
HhaI	GCGC	2 cut(s)	62, 285
Hin6I	GCGC	2 cut(s)	60, 283
HinP1I	GCGC	2 cut(s)	60, 283
HinfI	GANTC	1 cut(s)	24
HphI	GGTGA	1 cut(s)	220
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	1 cut(s)	23
Hpy188III	TCNNGA	3 cut(s)	80, 345, 422
Hpy8I	GTNNAC	1 cut(s)	356
Hpy99I	CGWCG	3 cut(s)	305, 318, 381
HpyAV	CCTTC	2 cut(s)	199, 270
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	108, 143, 159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 185
HpyF3I	CTNAG	1 cut(s)	20
HspAI	GCGC	2 cut(s)	60, 283
LpnPI	CCDG	4 cut(s)	41, 216, 243, 307
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	5 cut(s)	95, 136, 163, 168, 200
MaeI	CTAG	1 cut(s)	33
MboII	GAAGA	3 cut(s)	33, 36, 223
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	33
MnlI	CCTC	7 cut(s)	76, 248, 282, 353, 384, 396, 404
MseI	TTAA	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	57, 185
NmeAIII	GCCGAG	1 cut(s)	439
PkrI	GCNGC	2 cut(s)	178, 190
PleI	GAGTC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	32
PshBI	ATTAAT	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	257
PstNI	CAGNNNCTG	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	2 cut(s)	177, 189
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	3 cut(s)	210, 376, 420
SfaNI	GCATC	5 cut(s)	95, 136, 163, 168, 200
SfcI	CTRYAG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	3 cut(s)	189, 285, 309
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	229
TaaI	ACNGT	1 cut(s)	301
TaqI	TCGA	1 cut(s)	436
TasI	AATT	1 cut(s)	182
TauI	GCSGC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	231
VspI	ATTAAT	1 cut(s)	249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.