FvH4_1g21220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018783
Physical Location & Seq
Forward (+)
13226130 .. 13227416
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g21220.t1

Sequence Viewer

Length: 201 bp
ATGGAATTCGAAGGCGACTTCTTCGTGAAGCGGTTCTTTGTCATCGACTCCCACAGCGCGAGGACGAGGATCGGGATAGCCTGGACCGGATCCAGAAGGCGCTGCTCGACGCCATCGACGACTGCGGCAGGACCGTCTCGGTGGGAAGACTCACATCAACGTTGTCACGGCCGGCGACACGCCGTACACGTCGGCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.57

Weight (kDa)

10.5

Isoelectric Point (pI)

67.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21220 FvH4_1g21220 FvH4_1g28641 FvH4_1g28641 FvH4_2g24510
malus_domestica MD01G1098000.v1.1 MD02G1274100.v1.1 MD17G1274400.v1.1
pyrus_communis pycom17g27260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 59
AciI CCGC 2 cut(s) 31, 125
AclI AACGTT 1 cut(s) 160
AclWI GGATC 3 cut(s) 77, 84, 97
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 1 cut(s) 186
AflIII ACRYGT 1 cut(s) 187
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 80
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 3 cut(s) 77, 84, 97
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 5
Asp700I GAANNNNTTC 1 cut(s) 32
AspLEI GCGC 2 cut(s) 59, 102
AspS9I GGNCC 2 cut(s) 84, 131
AsuII TTCGAA 1 cut(s) 9
AvaII GGWCC 2 cut(s) 84, 131
BamHI GGATCC 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 89
BccI CCATC 1 cut(s) 121
BceAI ACGGC 2 cut(s) 167, 184
BciT130I CCWGG 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 141
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 2 cut(s) 103, 126
BlsI GCNGC 2 cut(s) 104, 127
Bme1390I CCNGG 1 cut(s) 82
Bme18I GGWCC 2 cut(s) 84, 131
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 84, 131
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 171
BseBI CCWGG 1 cut(s) 82
BseX3I CGGCCG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 59
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 1 cut(s) 171
BsiEI CGRYCG 1 cut(s) 172
BsiSI CCGG 2 cut(s) 87, 172
BsmAI GTCTC 1 cut(s) 141
BsmBI CGTCTC 1 cut(s) 141
BsnI GGCC 1 cut(s) 171
Bsp119I TTCGAA 1 cut(s) 9
Bsp143I GATC 2 cut(s) 69, 89
BspACI CCGC 2 cut(s) 31, 125
BspANI GGCC 1 cut(s) 171
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 3 cut(s) 77, 84, 97
BspT104I TTCGAA 1 cut(s) 9
BsrFI RCCGGY 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 171
BssMI GATC 2 cut(s) 69, 89
BssNI GRCGYC 1 cut(s) 110
Bst2UI CCWGG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 135
BstACI GRCGYC 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 9
BstC8I GCNNGC 1 cut(s) 173
BstFNI CGCG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 2 cut(s) 59, 102
BstKTI GATC 2 cut(s) 72, 92
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 69, 89
BstMCI CGRYCG 1 cut(s) 172
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 80
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 89
BstV2I GAAGAC 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BstZI CGGCCG 1 cut(s) 169
BsuRI GGCC 1 cut(s) 171
BtrI CACGTC 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 2 cut(s) 59, 102
Cfr10I RCCGGY 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 84, 131
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 185
CviJI RGCY 2 cut(s) 80, 171
CviKI_1 RGCY 2 cut(s) 80, 171
CviQI GTAC 1 cut(s) 185
DpnI GATC 2 cut(s) 71, 91
DpnII GATC 2 cut(s) 69, 89
EaeI YGGCCR 1 cut(s) 169
EagI CGGCCG 1 cut(s) 169
EclXI CGGCCG 1 cut(s) 169
Eco47I GGWCC 2 cut(s) 84, 131
Eco52I CGGCCG 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 80
Esp3I CGTCTC 1 cut(s) 141
FalI AAGNNNNNCTT 2 cut(s) 20, 52
Fnu4HI GCNGC 2 cut(s) 103, 126
Fsp4HI GCNGC 2 cut(s) 103, 126
GlaI GCGC 2 cut(s) 58, 101
GluI GCNGC 2 cut(s) 103, 126
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 1 cut(s) 171
HapII CCGG 2 cut(s) 87, 172
HgaI GACGC 1 cut(s) 118
HhaI GCGC 2 cut(s) 59, 102
Hin1I GRCGYC 1 cut(s) 110
Hin6I GCGC 2 cut(s) 57, 100
HinP1I GCGC 2 cut(s) 57, 100
HinfI GANTC 2 cut(s) 47, 149
HpaII CCGG 2 cut(s) 87, 172
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 3 cut(s) 25, 73, 93
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 3 cut(s) 112, 121, 194
HpyAV CCTTC 2 cut(s) 5, 90
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 2 cut(s) 160, 189
HpySE526I ACGT 2 cut(s) 160, 189
Hsp92I GRCGYC 1 cut(s) 110
HspAI GCGC 2 cut(s) 57, 100
KroI GCCGGC 1 cut(s) 171
KroNI GCCGGC 1 cut(s) 173
Kzo9I GATC 2 cut(s) 69, 89
LpnPI CCDG 6 cut(s) 67, 94, 100, 106, 114, 185
Lsp1109I GCAGC 1 cut(s) 89
MaeII ACGT 2 cut(s) 160, 189
MaeIII GTNAC 1 cut(s) 164
MalI GATC 2 cut(s) 71, 91
MboI GATC 2 cut(s) 69, 89
MboII GAAGA 2 cut(s) 13, 158
MflI RGATCY 1 cut(s) 89
MluCI AATT 1 cut(s) 5
MlyI GAGTC 2 cut(s) 41, 143
MnlI CCTC 2 cut(s) 54, 60
MroNI GCCGGC 1 cut(s) 171
MroXI GAANNNNTTC 1 cut(s) 32
MspI CCGG 2 cut(s) 87, 172
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
MvnI CGCG 1 cut(s) 59
NaeI GCCGGC 1 cut(s) 173
NdeII GATC 2 cut(s) 69, 89
NgoMIV GCCGGC 1 cut(s) 171
NlaIV GGNNCC 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 164
NspV TTCGAA 1 cut(s) 9
PcsI WCGNNNNNNNCGW 3 cut(s) 113, 116, 186
PdiI GCCGGC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 104, 127
PleI GAGTC 2 cut(s) 41, 143
PpsI GAGTC 2 cut(s) 41, 143
Psp1406I AACGTT 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 2 cut(s) 84, 131
PsuI RGATCY 1 cut(s) 89
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SatI GCNGC 2 cut(s) 103, 126
Sau3AI GATC 2 cut(s) 69, 89
Sau96I GGNCC 2 cut(s) 84, 131
SchI GAGTC 2 cut(s) 41, 143
ScrFI CCNGG 1 cut(s) 82
SetI ASST 2 cut(s) 163, 192
SfuI TTCGAA 1 cut(s) 9
SinI GGWCC 2 cut(s) 84, 131
Sse9I AATT 1 cut(s) 5
SsiI CCGC 2 cut(s) 31, 125
StyD4I CCNGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 2 cut(s) 163, 192
TaqI TCGA 4 cut(s) 9, 45, 107, 116
TasI AATT 1 cut(s) 5
TauI GCSGC 1 cut(s) 128
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 1 cut(s) 102
Tsp45I GTSAC 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 84, 131
XapI RAATTY 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.