MD17G1274400.v1.1

Belongs to the glycosyl hydrolase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0018783
Physical Location & Seq
Reverse (-)
33587420 .. 33595274
7855 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1274400.v1.1.491

Sequence Viewer

Length: 609 bp
ATGGCGAACTGGTGTTTAAGGACCAGTACCTCGAGATATCCACCCGACCGCCGAAAGACGCCTCCCTGTACGGCCTCGGAGAGAACACTCAGCCGCACGGGATCAAGCTCTACCCGAACGATCCACACACCCTCTTCACCACTGAAGTCTCGGCGATCAATCTCAACACTGATTTGTACGGGTCCCACCCGGTTTTACATGGATCTCCAGAATGTGGGCAACGAGGCTTACGCGCACTCTGTTATGCTGATCAACAGCAATGGCATGGATGTGTTCTACAGAGGGACTTCTCTCACCTACAAGGTCATTGGGAGTGTTTTCGACTTTTACTTCTTTGCAGGGCCGACGCCGTTGGGCGTTGTCGACCAGGACACGGCGTTCATCGGCAGACCGGCCCGGATGCCCTATTGGTCTCTTGGGAGTGGTGTCTTACAGTGCAAAGCGAGGAGGGCATCATCACTGAGCTCTACATCCTGGGAAAATGTTTGGAGATGGACAAATGATCACCAAGAAGACGTGATAAAGGATGGAGGGAATGAAGTATTGTTTGATGACCAAATCACGAAGCGGAGAACAACACGGAGTGGAAGAAGTTATCATGTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_31

Protein Analysis

203

Amino Acids

22.79

Weight (kDa)

9.86

Isoelectric Point (pI)

60.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21220 FvH4_1g21220 FvH4_1g28641 FvH4_1g28641 FvH4_2g24510
malus_domestica MD01G1098000.v1.1 MD02G1274100.v1.1 MD17G1274400.v1.1
pyrus_communis pycom17g27260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 214
AccI GTMKAC 1 cut(s) 363
AccII CGCG 1 cut(s) 233
AciI CCGC 3 cut(s) 49, 94, 568
AclWI GGATC 3 cut(s) 109, 115, 210
AcuI CTGAAG 1 cut(s) 164
AcyI GRCGYC 2 cut(s) 59, 347
AdeI CACNNNGTG 1 cut(s) 584
AfaI GTAC 3 cut(s) 28, 70, 178
AfiI CCNNNNNNNGG 2 cut(s) 214, 373
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 2 cut(s) 366, 473
AloI GAACNNNNNNTCC 2 cut(s) 362, 394
AluBI AGCT 2 cut(s) 108, 465
AluI AGCT 2 cut(s) 108, 465
Alw21I GWGCWC 1 cut(s) 467
Alw26I GTCTC 2 cut(s) 153, 417
AlwI GGATC 3 cut(s) 109, 115, 210
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 3 cut(s) 72, 341, 393
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 4 cut(s) 21, 182, 341, 394
AsuC2I CCSGG 2 cut(s) 190, 397
AsuHPI GGTGA 3 cut(s) 129, 286, 497
AvaI CYCGRG 1 cut(s) 31
AvaII GGWCC 2 cut(s) 21, 182
BanII GRGCYC 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 519
Bbv12I GWGCWC 1 cut(s) 467
BccI CCATC 2 cut(s) 486, 521
BceAI ACGGC 3 cut(s) 87, 334, 390
BciT130I CCWGG 2 cut(s) 368, 475
BclI TGATCA 2 cut(s) 249, 502
BcnI CCSGG 2 cut(s) 190, 397
BcoDI GTCTC 2 cut(s) 153, 417
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 4 cut(s) 190, 368, 397, 475
Bme18I GGWCC 2 cut(s) 21, 182
BmeT110I CYCGRG 1 cut(s) 31
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 4 cut(s) 21, 182, 341, 394
BmiI GGNNCC 2 cut(s) 183, 184
BmrFI CCNGG 4 cut(s) 190, 368, 397, 475
BmsI GCATC 2 cut(s) 390, 461
BpiI GAAGAC 1 cut(s) 519
BpmI CTGGAG 1 cut(s) 191
BpuMI CCSGG 2 cut(s) 190, 397
BsaHI GRCGYC 2 cut(s) 59, 347
BsaI GGTCTC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 75, 474
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 373
Bse118I RCCGGY 1 cut(s) 391
Bse1I ACTGG 2 cut(s) 14, 24
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 2 cut(s) 368, 475
BseDI CCNNGG 2 cut(s) 75, 474
BseGI GGATG 4 cut(s) 274, 405, 470, 532
BseLI CCNNNNNNNGG 2 cut(s) 214, 373
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 103, 452
BseNI ACTGG 2 cut(s) 14, 24
BseRI GAGGAG 1 cut(s) 460
Bsh1236I CGCG 1 cut(s) 233
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 3 cut(s) 74, 343, 395
BsiEI CGRYCG 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 467
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 3 cut(s) 190, 392, 397
BslFI GGGAC 2 cut(s) 168, 298
BslI CCNNNNNNNGG 2 cut(s) 214, 373
BsmAI GTCTC 2 cut(s) 153, 417
BsmFI GGGAC 2 cut(s) 168, 298
BsnI GGCC 3 cut(s) 74, 343, 395
Bso31I GGTCTC 1 cut(s) 417
BsoBI CYCGRG 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 467
Bsp143I GATC 6 cut(s) 101, 120, 155, 202, 249, 502
BspACI CCGC 3 cut(s) 49, 94, 568
BspANI GGCC 3 cut(s) 74, 343, 395
BspCNI CTCAG 2 cut(s) 102, 453
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 2 cut(s) 183, 184
BspPI GGATC 3 cut(s) 109, 115, 210
BspTNI GGTCTC 1 cut(s) 417
BsrDI GCAATG 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 391
BsrI ACTGG 2 cut(s) 14, 24
BssAI RCCGGY 1 cut(s) 391
BssECI CCNNGG 2 cut(s) 75, 474
BssMI GATC 6 cut(s) 101, 120, 155, 202, 249, 502
BssNI GRCGYC 2 cut(s) 59, 347
Bst2UI CCWGG 2 cut(s) 368, 475
Bst4CI ACNGT 1 cut(s) 435
Bst6I CTCTTC 1 cut(s) 139
BstACI GRCGYC 2 cut(s) 59, 347
BstDEI CTNAG 2 cut(s) 89, 461
BstF5I GGATG 4 cut(s) 274, 405, 470, 532
BstFNI CGCG 1 cut(s) 233
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 6 cut(s) 104, 123, 158, 205, 252, 505
BstMAI GTCTC 2 cut(s) 153, 417
BstMBI GATC 6 cut(s) 101, 120, 155, 202, 249, 502
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 2 cut(s) 368, 475
BstSCI CCNGG 4 cut(s) 188, 366, 395, 473
BstSFI CTRYAG 1 cut(s) 277
BstUI CGCG 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 3 cut(s) 74, 343, 395
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 4 cut(s) 274, 405, 470, 532
BtsIMutI CAGTG 4 cut(s) 140, 167, 440, 458
CfoI GCGC 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 391
Cfr13I GGNCC 4 cut(s) 21, 182, 341, 394
CseI GACGC 2 cut(s) 67, 355
Csp6I GTAC 3 cut(s) 27, 69, 177
CviAII CATG 3 cut(s) 199, 265, 599
CviJI RGCY 7 cut(s) 74, 93, 108, 227, 343, 395, 465
CviKI_1 RGCY 7 cut(s) 74, 93, 108, 227, 343, 395, 465
CviQI GTAC 3 cut(s) 27, 69, 177
DdeI CTNAG 2 cut(s) 89, 461
DpnI GATC 6 cut(s) 103, 122, 157, 204, 251, 504
DpnII GATC 6 cut(s) 101, 120, 155, 202, 249, 502
DraIII CACNNNGTG 1 cut(s) 584
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 467
Eco31I GGTCTC 1 cut(s) 417
Eco32I GATATC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 21, 182
Eco53kI GAGCTC 1 cut(s) 465
Eco57I CTGAAG 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 366, 473
EcoRV GATATC 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 467
FaeI CATG 3 cut(s) 202, 268, 602
FaiI YATR 4 cut(s) 200, 245, 266, 600
FaqI GGGAC 2 cut(s) 168, 298
FatI CATG 3 cut(s) 198, 264, 598
FbaI TGATCA 2 cut(s) 249, 502
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 94
FokI GGATG 4 cut(s) 281, 412, 457, 539
FriOI GRGCYC 1 cut(s) 467
Fsp4HI GCNGC 1 cut(s) 94
GlaI GCGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 94
GsuI CTGGAG 1 cut(s) 191
HaeIII GGCC 3 cut(s) 74, 343, 395
HapII CCGG 3 cut(s) 190, 392, 397
HgaI GACGC 2 cut(s) 67, 355
HhaI GCGC 1 cut(s) 235
Hin1I GRCGYC 2 cut(s) 59, 347
Hin1II CATG 3 cut(s) 202, 268, 602
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HpaII CCGG 3 cut(s) 190, 392, 397
HphI GGTGA 3 cut(s) 129, 286, 497
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 3 cut(s) 33, 208, 562
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 1 cut(s) 349
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4IV ACGT 1 cut(s) 516
HpyCH4V TGCA 2 cut(s) 338, 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 2 cut(s) 89, 461
HpySE526I ACGT 1 cut(s) 516
Hsp92I GRCGYC 2 cut(s) 59, 347
Hsp92II CATG 3 cut(s) 202, 268, 602
HspAI GCGC 1 cut(s) 233
KflI GGGWCCC 1 cut(s) 182
Ksp22I TGATCA 2 cut(s) 249, 502
Kzo9I GATC 6 cut(s) 101, 120, 155, 202, 249, 502
LweI GCATC 2 cut(s) 390, 461
MaeII ACGT 1 cut(s) 516
MalI GATC 6 cut(s) 103, 122, 157, 204, 251, 504
MboI GATC 6 cut(s) 101, 120, 155, 202, 249, 502
MboII GAAGA 3 cut(s) 126, 524, 600
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 467
MnlI CCTC 9 cut(s) 40, 72, 85, 142, 217, 275, 438, 441, 524
MseI TTAA 2 cut(s) 17, 603
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 3 cut(s) 190, 392, 397
MspR9I CCNGG 4 cut(s) 190, 368, 397, 475
MvaI CCWGG 2 cut(s) 368, 475
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 449
NciI CCSGG 2 cut(s) 190, 397
NdeII GATC 6 cut(s) 101, 120, 155, 202, 249, 502
NlaIII CATG 3 cut(s) 202, 268, 602
NlaIV GGNNCC 2 cut(s) 183, 184
NmeAIII GCCGAG 1 cut(s) 130
PaeR7I CTCGAG 1 cut(s) 31
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 182
Psp124BI GAGCTC 1 cut(s) 467
Psp5II RGGWCCY 1 cut(s) 182
Psp6I CCWGG 2 cut(s) 366, 473
PspGI CCWGG 2 cut(s) 366, 473
PspN4I GGNNCC 2 cut(s) 183, 184
PspPI GGNCC 4 cut(s) 21, 182, 341, 394
PspPPI RGGWCCY 1 cut(s) 182
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 3 cut(s) 28, 70, 178
RsaNI GTAC 3 cut(s) 27, 69, 177
RseI CAYNNNNRTG 1 cut(s) 269
SacI GAGCTC 1 cut(s) 467
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 17, 603
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 6 cut(s) 101, 120, 155, 202, 249, 502
Sau96I GGNCC 4 cut(s) 21, 182, 341, 394
ScrFI CCNGG 4 cut(s) 190, 368, 397, 475
SduI GDGCHC 1 cut(s) 467
SetI ASST 6 cut(s) 32, 110, 299, 306, 467, 519
SfaNI GCATC 2 cut(s) 390, 461
SfcI CTRYAG 1 cut(s) 277
Sfr274I CTCGAG 1 cut(s) 31
SinI GGWCC 2 cut(s) 21, 182
SlaI CTCGAG 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
SsiI CCGC 3 cut(s) 49, 94, 568
SstI GAGCTC 1 cut(s) 467
StyD4I CCNGG 4 cut(s) 188, 366, 395, 473
TaaI ACNGT 1 cut(s) 435
TaiI ACGT 1 cut(s) 519
TaqI TCGA 3 cut(s) 32, 321, 363
TauI GCSGC 1 cut(s) 96
Tru1I TTAA 2 cut(s) 17, 603
Tru9I TTAA 2 cut(s) 17, 603
TscAI CASTG 4 cut(s) 147, 174, 440, 465
TspDTI ATGAA 2 cut(s) 370, 552
TspGWI ACGGA 1 cut(s) 595
TspRI CASTG 4 cut(s) 147, 174, 440, 465
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 2 cut(s) 21, 182
XhoI CTCGAG 1 cut(s) 31
XmiI GTMKAC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.