Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0018783

Physical Location & Seq

Genomic Coordinates Reverse (-)

19993339 .. 19995656

Gene Structure 2318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGGCGCCGTGGTTAAAAAGGATAAAAATTTGCAACGGCGGAAAGAGGCCGTGGCAAACTTTGTAATCAATAGCAACGGCAAGGTGATCTTGGCCATTCGTCTCTACACCGATTCATCTGGAACGTTAGTAGTCTTGAGGAAAGACTCATCCGACTCCGACTCCGACGCTGCGTCCGGCGACGCGCCAGCCAAGCTCTTCGTGATCCGCACCCACAACCGCATCGGCCTCCTCCGGATCATCACGCGCGTCGTCCTCGGCCTCCGCGTCGACAAGGCCACCGTGGAATTCGAAGGCGACTTCTTCGTGAAGCGGTTCTTCGTCACCGACTCCCGCGGTGCGAGGATCGAGGACCGGGACAGCCTGGACCGGATCCAGAAGGCGCTGCTCGACGCCATCGACGACTGCGGCAGGACCGTCTCAGCCGGAAGACTCGCATCAGCGTCGACTAGTCCGCTGGCTGTGGTTGACCAGTACAGTTCTTTCATCGGAAGACCGGCTCCAATGCCTTACTGGTCTCTAGAATCAAGCGATGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009987 GO:0010033 GO:0010243 GO:0014070 GO:0014074 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044464 GO:0046683 GO:0048037 GO:0050662 GO:0050896 GO:0051591 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

181

Amino Acids

19.77

Weight (kDa)

9.3

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018783)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g21220 FvH4_1g21220 FvH4_1g28641 FvH4_1g28641 FvH4_2g24510
malus_domestica	MD01G1098000.v1.1 MD02G1274100.v1.1 MD17G1274400.v1.1
pyrus_communis	pycom17g27260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccI	GTMKAC	2 cut(s)	270, 446
AccII	CGCG	5 cut(s)	185, 247, 249, 267, 336
AccIII	TCCGGA	1 cut(s)	234
AciI	CCGC	9 cut(s)	40, 208, 220, 265, 313, 334, 336, 408, 455
AclI	AACGTT	1 cut(s)	125
AclWI	GGATC	5 cut(s)	199, 245, 353, 367, 380
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	2 cut(s)	28, 287
AcyI	GRCGYC	2 cut(s)	6, 393
AfaI	GTAC	1 cut(s)	476
AhdI	GACNNNNNGTC	1 cut(s)	172
AhlI	ACTAGT	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	1 cut(s)	196
AluI	AGCT	1 cut(s)	196
Alw26I	GTCTC	3 cut(s)	107, 424, 522
AlwI	GGATC	5 cut(s)	199, 245, 353, 367, 380
Aor13HI	TCCGGA	1 cut(s)	234
AoxI	GGCC	5 cut(s)	48, 93, 226, 259, 276
ApeKI	GCWGC	2 cut(s)	170, 385
ApoI	RAATTY	2 cut(s)	28, 287
Asp700I	GAANNNNTTC	1 cut(s)	314
AspLEI	GCGC	4 cut(s)	8, 187, 249, 385
AspS9I	GGNCC	3 cut(s)	352, 367, 414
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	2 cut(s)	97, 316
AsuII	TTCGAA	1 cut(s)	291
AvaII	GGWCC	3 cut(s)	352, 367, 414
BalI	TGGCCA	1 cut(s)	95
BamHI	GGATCC	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	436, 499
BbvI	GCAGC	2 cut(s)	157, 372
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	3 cut(s)	35, 53, 94
BcgI	CGANNNNNNTGC	2 cut(s)	426, 460
BciT130I	CCWGG	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	3 cut(s)	107, 424, 522
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	2 cut(s)	450, 521
BfoI	RGCGCY	2 cut(s)	9, 386
BisI	GCNGC	3 cut(s)	171, 386, 409
BlsI	GCNGC	3 cut(s)	172, 387, 410
Bme1390I	CCNGG	2 cut(s)	356, 365
Bme18I	GGWCC	3 cut(s)	352, 367, 414
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	3 cut(s)	352, 367, 414
BmiI	GGNNCC	3 cut(s)	7, 374, 501
BmrFI	CCNGG	2 cut(s)	356, 365
BmsI	GCATC	2 cut(s)	231, 446
BpiI	GAAGAC	2 cut(s)	436, 499
Bpu14I	TTCGAA	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	157
BpuMI	CCSGG	1 cut(s)	356
BsaHI	GRCGYC	2 cut(s)	6, 393
BsaI	GGTCTC	1 cut(s)	522
BsaJI	CCNNGG	5 cut(s)	9, 51, 256, 282, 334
BsaWI	WCCGGW	2 cut(s)	234, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bse118I	RCCGGY	1 cut(s)	496
Bse1I	ACTGG	2 cut(s)	472, 518
BseAI	TCCGGA	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	365
BseDI	CCNNGG	5 cut(s)	9, 51, 256, 282, 334
BseGI	GGATG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	2 cut(s)	472, 518
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	157, 372
Bsh1236I	CGCG	5 cut(s)	185, 247, 249, 267, 336
BshFI	GGCC	5 cut(s)	50, 95, 228, 261, 278
BshNI	GGYRCC	1 cut(s)	5
BsiSI	CCGG	6 cut(s)	177, 235, 355, 370, 426, 497
BslFI	GGGAC	1 cut(s)	371
BsmAI	GTCTC	3 cut(s)	107, 424, 522
BsmBI	CGTCTC	2 cut(s)	107, 424
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	5 cut(s)	50, 95, 228, 261, 278
Bso31I	GGTCTC	1 cut(s)	522
Bsp119I	TTCGAA	1 cut(s)	291
Bsp13I	TCCGGA	1 cut(s)	234
Bsp143I	GATC	5 cut(s)	87, 204, 237, 345, 372
BspACI	CCGC	9 cut(s)	40, 208, 220, 265, 313, 334, 336, 408, 455
BspANI	GGCC	5 cut(s)	50, 95, 228, 261, 278
BspCNI	CTCAG	1 cut(s)	434
BspEI	TCCGGA	1 cut(s)	234
BspFNI	CGCG	5 cut(s)	185, 247, 249, 267, 336
BspLI	GGNNCC	3 cut(s)	7, 374, 501
BspPI	GGATC	5 cut(s)	199, 245, 353, 367, 380
BspQI	GCTCTTC	1 cut(s)	203
BspT104I	TTCGAA	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	472, 518
BssAI	RCCGGY	1 cut(s)	496
BssECI	CCNNGG	5 cut(s)	9, 51, 256, 282, 334
BssMI	GATC	5 cut(s)	87, 204, 237, 345, 372
BssNI	GRCGYC	2 cut(s)	6, 393
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	3 cut(s)	283, 418, 479
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	2 cut(s)	6, 393
BstBI	TTCGAA	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	189, 459
BstDEI	CTNAG	1 cut(s)	421
BstDSI	CCRYGG	4 cut(s)	9, 51, 282, 334
BstF5I	GGATG	1 cut(s)	149
BstFNI	CGCG	5 cut(s)	185, 247, 249, 267, 336
BstH2I	RGCGCY	2 cut(s)	9, 386
BstHHI	GCGC	4 cut(s)	8, 187, 249, 385
BstKTI	GATC	5 cut(s)	90, 207, 240, 348, 375
BstMAI	GTCTC	3 cut(s)	107, 424, 522
BstMBI	GATC	5 cut(s)	87, 204, 237, 345, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	354, 363
BstUI	CGCG	5 cut(s)	185, 247, 249, 267, 336
BstV1I	GCAGC	2 cut(s)	157, 372
BstV2I	GAAGAC	2 cut(s)	436, 499
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BsuRI	GGCC	5 cut(s)	50, 95, 228, 261, 278
BtgI	CCRYGG	4 cut(s)	9, 51, 282, 334
BtsCI	GGATG	1 cut(s)	149
Cac8I	GCNNGC	2 cut(s)	189, 459
CfoI	GCGC	4 cut(s)	8, 187, 249, 385
Cfr10I	RCCGGY	1 cut(s)	496
Cfr13I	GGNCC	3 cut(s)	352, 367, 414
Cfr42I	CCGCGG	1 cut(s)	337
CseI	GACGC	7 cut(s)	162, 176, 191, 238, 256, 401, 432
Csp6I	GTAC	1 cut(s)	475
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	1 cut(s)	421
DinI	GGCGCC	1 cut(s)	7
DpnI	GATC	5 cut(s)	89, 206, 239, 347, 374
DpnII	GATC	5 cut(s)	87, 204, 237, 345, 372
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	203
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	522
Eco47I	GGWCC	3 cut(s)	352, 367, 414
EcoRI	GAATTC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	363
EgeI	GGCGCC	1 cut(s)	7
EheI	GGCGCC	1 cut(s)	7
Esp3I	CGTCTC	2 cut(s)	107, 424
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 302, 334
FaqI	GGGAC	1 cut(s)	371
FauI	CCCGC	1 cut(s)	341
FblI	GTMKAC	2 cut(s)	270, 446
Fnu4HI	GCNGC	3 cut(s)	171, 386, 409
FokI	GGATG	1 cut(s)	136
Fsp4HI	GCNGC	3 cut(s)	171, 386, 409
FspBI	CTAG	2 cut(s)	450, 521
GlaI	GCGC	4 cut(s)	7, 186, 248, 384
GluI	GCNGC	3 cut(s)	171, 386, 409
HaeII	RGCGCY	2 cut(s)	9, 386
HaeIII	GGCC	5 cut(s)	50, 95, 228, 261, 278
HapII	CCGG	6 cut(s)	177, 235, 355, 370, 426, 497
HgaI	GACGC	7 cut(s)	162, 176, 191, 238, 256, 401, 432
HhaI	GCGC	4 cut(s)	8, 187, 249, 385
Hin1I	GRCGYC	2 cut(s)	6, 393
Hin6I	GCGC	4 cut(s)	6, 185, 247, 383
HinP1I	GCGC	4 cut(s)	6, 185, 247, 383
HincII	GTYRAC	3 cut(s)	271, 447, 469
HindII	GTYRAC	3 cut(s)	271, 447, 469
HinfI	GANTC	7 cut(s)	113, 146, 155, 161, 329, 432, 524
HpaII	CCGG	6 cut(s)	177, 235, 355, 370, 426, 497
HphI	GGTGA	2 cut(s)	97, 316
Hpy166II	GTNNAC	3 cut(s)	271, 447, 469
Hpy188I	TCNGA	4 cut(s)	154, 160, 166, 491
Hpy188III	TCNNGA	7 cut(s)	120, 136, 202, 235, 307, 376, 521
Hpy8I	GTNNAC	3 cut(s)	271, 447, 469
Hpy99I	CGWCG	7 cut(s)	170, 185, 254, 272, 395, 404, 448
HpyAV	CCTTC	2 cut(s)	287, 373
HpyCH4III	ACNGT	3 cut(s)	283, 418, 479
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	421
HpySE526I	ACGT	1 cut(s)	125
Hsp92I	GRCGYC	2 cut(s)	6, 393
HspAI	GCGC	4 cut(s)	6, 185, 247, 383
KasI	GGCGCC	1 cut(s)	5
Kpn2I	TCCGGA	1 cut(s)	234
KspI	CCGCGG	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	87, 204, 237, 345, 372
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	2 cut(s)	157, 372
LweI	GCATC	2 cut(s)	231, 446
MaeI	CTAG	2 cut(s)	450, 521
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	5 cut(s)	89, 206, 239, 347, 374
MboI	GATC	5 cut(s)	87, 204, 237, 345, 372
MboII	GAAGA	5 cut(s)	190, 295, 310, 441, 504
MflI	RGATCY	1 cut(s)	372
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	2 cut(s)	28, 287
MluNI	TGGCCA	1 cut(s)	95
Mly113I	GGCGCC	1 cut(s)	6
MlyI	GAGTC	5 cut(s)	140, 149, 155, 323, 426
MmeI	TCCRAC	3 cut(s)	177, 183, 189
MnlI	CCTC	8 cut(s)	40, 132, 239, 242, 266, 272, 336, 343
Mox20I	TGGCCA	1 cut(s)	95
MroI	TCCGGA	1 cut(s)	234
MroXI	GAANNNNTTC	1 cut(s)	314
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	95
MspA1I	CMGCKG	2 cut(s)	336, 457
MspI	CCGG	6 cut(s)	177, 235, 355, 370, 426, 497
MspR9I	CCNGG	2 cut(s)	356, 365
MvaI	CCWGG	1 cut(s)	365
MvnI	CGCG	5 cut(s)	185, 247, 249, 267, 336
MwoI	GCNNNNNNNGC	1 cut(s)	193
NarI	GGCGCC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	5 cut(s)	87, 204, 237, 345, 372
NlaIV	GGNNCC	3 cut(s)	7, 374, 501
NmeAIII	GCCGAG	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	322
NspV	TTCGAA	1 cut(s)	291
PciSI	GCTCTTC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	3 cut(s)	264, 396, 399
PdmI	GAANNNNTTC	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	113, 524
PkrI	GCNGC	3 cut(s)	172, 387, 410
PleI	GAGTC	5 cut(s)	140, 149, 155, 323, 426
PluTI	GGCGCC	1 cut(s)	9
PpsI	GAGTC	5 cut(s)	140, 149, 155, 323, 426
Psp1406I	AACGTT	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	3 cut(s)	7, 374, 501
PspPI	GGNCC	3 cut(s)	352, 367, 414
PsuI	RGATCY	1 cut(s)	372
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SacII	CCGCGG	1 cut(s)	337
SalI	GTCGAC	2 cut(s)	269, 445
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	3 cut(s)	171, 386, 409
Sau3AI	GATC	5 cut(s)	87, 204, 237, 345, 372
Sau96I	GGNCC	3 cut(s)	352, 367, 414
SchI	GAGTC	5 cut(s)	140, 149, 155, 323, 426
ScrFI	CCNGG	2 cut(s)	356, 365
SetI	ASST	3 cut(s)	87, 128, 198
SfaNI	GCATC	2 cut(s)	231, 446
SfoI	GGCGCC	1 cut(s)	7
Sfr303I	CCGCGG	1 cut(s)	337
SfuI	TTCGAA	1 cut(s)	291
SgrBI	CCGCGG	1 cut(s)	337
SinI	GGWCC	3 cut(s)	352, 367, 414
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	2 cut(s)	28, 287
SsiI	CCGC	9 cut(s)	40, 208, 220, 265, 313, 334, 336, 408, 455
SspDI	GGCGCC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	450, 521
StyD4I	CCNGG	2 cut(s)	354, 363
TaaI	ACNGT	3 cut(s)	283, 418, 479
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	6 cut(s)	270, 291, 348, 390, 399, 446
TasI	AATT	2 cut(s)	28, 287
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	1 cut(s)	411
TfiI	GAWTC	2 cut(s)	113, 524
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	2 cut(s)	170, 385
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	105, 475
VpaK11BI	GGWCC	3 cut(s)	352, 367, 414
XapI	RAATTY	2 cut(s)	28, 287
XbaI	TCTAGA	1 cut(s)	520
XcmI	CCANNNNNNNNNTGG	1 cut(s)	510
XmiI	GTMKAC	2 cut(s)	270, 446
XmnI	GAANNNNTTC	1 cut(s)	314
XspI	CTAG	2 cut(s)	450, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.