MD01G1098000.v1.1

Belongs to the glycosyl hydrolase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0018783
Physical Location & Seq
Reverse (-)
21207266 .. 21208808
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1098000.v1.1.491

Sequence Viewer

Length: 231 bp
ATGCTCTTCTTCTTCCTCTTCATCTTCTGGTGCAAAACGAGGAGGGAATCATCACCGAGCTCTACATCCTGGGAAAATGTTCGGAGACGAACAAGTGATCACCAAGAAGATATGATAAAGGATGGAGGGAATGAAGTATTGTTTAATGATCAAATCACGAAGCGGAGAACAACATGGAGTGGTTTTGATTCTCATGCCCTGCCACATGCTCAAACACATCAGAGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_31

Protein Analysis

77

Amino Acids

9.05

Weight (kDa)

8.02

Isoelectric Point (pI)

75.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018783)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21220 FvH4_1g21220 FvH4_1g28641 FvH4_1g28641 FvH4_2g24510
malus_domestica MD01G1098000.v1.1 MD02G1274100.v1.1 MD17G1274400.v1.1
pyrus_communis pycom17g27260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 45, 92
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 62
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 70
BclI TGATCA 2 cut(s) 97, 148
BcoDI GTCTC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 69
BseGI GGATG 2 cut(s) 65, 127
BseRI GAGGAG 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 79
BsmBI CGTCTC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 97, 148
BspACI CCGC 1 cut(s) 163
BspQI GCTCTTC 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 2 cut(s) 97, 148
Bst2UI CCWGG 1 cut(s) 70
Bst6I CTCTTC 2 cut(s) 11, 23
BstF5I GGATG 2 cut(s) 65, 127
BstKTI GATC 2 cut(s) 100, 151
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 2 cut(s) 97, 148
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 68
BtsCI GGATG 2 cut(s) 65, 127
CviAII CATG 3 cut(s) 174, 194, 206
CviJI RGCY 1 cut(s) 60
CviKI_1 RGCY 1 cut(s) 60
DpnI GATC 2 cut(s) 99, 150
DpnII GATC 2 cut(s) 97, 148
Eam1104I CTCTTC 2 cut(s) 11, 23
EarI CTCTTC 2 cut(s) 11, 23
Ecl136II GAGCTC 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 62
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 3 cut(s) 177, 197, 209
FaiI YATR 4 cut(s) 113, 175, 195, 207
FatI CATG 3 cut(s) 173, 193, 205
FbaI TGATCA 2 cut(s) 97, 148
FokI GGATG 2 cut(s) 52, 134
FriOI GRGCYC 1 cut(s) 62
Hin1II CATG 3 cut(s) 177, 197, 209
HinfI GANTC 2 cut(s) 47, 188
HphI GGTGA 2 cut(s) 45, 92
Hpy188I TCNGA 2 cut(s) 84, 222
Hpy188III TCNNGA 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 33
Hsp92II CATG 3 cut(s) 177, 197, 209
Ksp22I TGATCA 2 cut(s) 97, 148
Kzo9I GATC 2 cut(s) 97, 148
LguI GCTCTTC 1 cut(s) 11
LpnPI CCDG 4 cut(s) 13, 55, 82, 212
MalI GATC 2 cut(s) 99, 150
MboI GATC 2 cut(s) 97, 148
MboII GAAGA 4 cut(s) 4, 10, 16, 119
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 1 cut(s) 226
MnlI CCTC 4 cut(s) 26, 33, 36, 119
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
NdeII GATC 2 cut(s) 97, 148
NlaIII CATG 3 cut(s) 177, 197, 209
NspI RCATGY 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 11
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 2 cut(s) 47, 188
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 11
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 2 cut(s) 97, 148
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 62
SetI ASST 1 cut(s) 62
Sse9I AATT 1 cut(s) 226
SsiI CCGC 1 cut(s) 163
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 68
TasI AATT 1 cut(s) 226
TfiI GAWTC 2 cut(s) 47, 188
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TspDTI ATGAA 2 cut(s) 10, 147
XceI RCATGY 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.