FvH4_1g23170

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017968
Physical Location & Seq
Reverse (-)
15015350 .. 15016101
752 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23170.t1

Sequence Viewer

Length: 288 bp
ATGGAGAAGAGCAAATCTTTTTCTGGGTACTACTCAACTGGATATACAGAGGCCAGGTTCGGGTTTGAGGATCGAAATAAATCTTATAGCTTCAATGGTCCGGTGAGCAAGATAGAGGGGCTATCTTCAGCATCAGGGTCTGGCAATAGTAATCCAGAGCTGGAGAGAAGGAAGAGGGTGGCAAACTATAACATGTATGCTGTGGAAGGTAAGTTCAAGTCGTCGCTGCGCAACAGTTTCAAATGGATCAAAGGTAAGTTTGTGGACAACTTCTACGACGAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

96

Amino Acids

10.89

Weight (kDa)

9.49

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 50 - 91 1.8e-21 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017968)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23170
malus_domestica MD15G1335800.v1.1
prunus_persica Prupe.6G166900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0117891
rosa_multiflora Rmu_sc0004968.1_g000013
rosa_roxburghii Rroxscaffold_2G00126120
rosa_rugosa Rorug02G0214800
rosa_samantha Rh2AG271100 Rh2DG279000 Rh2DG296900
rosa_wichuraiana Rw2G021440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 230
AclWI GGATC 2 cut(s) 78, 254
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 60
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 3 cut(s) 94, 217, 241
AjnI CCWGG 1 cut(s) 53
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 90, 160
AluI AGCT 2 cut(s) 90, 160
AlwI GGATC 2 cut(s) 78, 254
AlwNI CAGNNNCTG 1 cut(s) 140
AoxI GGCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 213
BciT130I CCWGG 1 cut(s) 55
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 60
Bse1I ACTGG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 55
BseLI CCNNNNNNNGG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 1 cut(s) 213
BshFI GGCC 1 cut(s) 53
BsiSI CCGG 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 60
BsnI GGCC 1 cut(s) 53
Bsp143I GATC 2 cut(s) 70, 246
BspANI GGCC 1 cut(s) 53
BspPI GGATC 2 cut(s) 78, 254
BspQI GCTCTTC 1 cut(s) 2
BsrI ACTGG 1 cut(s) 43
BssMI GATC 2 cut(s) 70, 246
Bst2UI CCWGG 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 2 cut(s) 2, 167
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 73, 249
BstMBI GATC 2 cut(s) 70, 246
BstNI CCWGG 1 cut(s) 55
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 53
CaiI CAGNNNCTG 1 cut(s) 140
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 1 cut(s) 28
CviAII CATG 1 cut(s) 193
CviJI RGCY 4 cut(s) 53, 90, 121, 160
CviKI_1 RGCY 4 cut(s) 53, 90, 121, 160
CviQI GTAC 1 cut(s) 28
DpnI GATC 2 cut(s) 72, 248
DpnII GATC 2 cut(s) 70, 246
Eam1104I CTCTTC 2 cut(s) 2, 167
EarI CTCTTC 2 cut(s) 2, 167
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 53
FaeI CATG 1 cut(s) 196
FaiI YATR 5 cut(s) 45, 87, 189, 194, 198
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
FspI TGCGCA 1 cut(s) 230
GlaI GCGC 1 cut(s) 230
GluI GCNGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 182
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 101
HhaI GCGC 1 cut(s) 231
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 265
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 2 cut(s) 226, 281
HpyAV CCTTC 2 cut(s) 162, 200
HpyCH4III ACNGT 1 cut(s) 236
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 70, 246
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 9 cut(s) 9, 24, 40, 67, 114, 120, 126, 146, 168
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 1 cut(s) 140
MalI GATC 2 cut(s) 72, 248
MboI GATC 2 cut(s) 70, 246
MboII GAAGA 3 cut(s) 19, 117, 184
MnlI CCTC 4 cut(s) 43, 61, 109, 168
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
NdeII GATC 2 cut(s) 70, 246
NlaIII CATG 1 cut(s) 196
NsbI TGCGCA 1 cut(s) 230
NspI RCATGY 1 cut(s) 196
PciI ACATGT 1 cut(s) 192
PciSI GCTCTTC 1 cut(s) 2
PkrI GCNGC 1 cut(s) 228
PscI ACATGT 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspPI GGNCC 1 cut(s) 98
PstNI CAGNNNCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 2
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 2 cut(s) 70, 246
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 55
SetI ASST 5 cut(s) 59, 92, 162, 211, 256
SfaNI GCATC 1 cut(s) 140
SinI GGWCC 1 cut(s) 98
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 73
TseI GCWGC 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 98
XceI RCATGY 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.