MD15G1335800.v1.1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0017968
Physical Location & Seq
Forward (+)
37601453 .. 37602314
862 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1335800.v1.1.491

Sequence Viewer

Length: 279 bp
ATGGAGAAGAGCAAATCATTTTCCGGGTGCTACTCGAGCAACTACAAGGAGGTCCAACTTGGATTTGAGGACCGGTCGAAATCATATAGCTTCAATGGTCCTGTCAGCTACGGCAAGGCTGACGACTTGTCTTCAACATCTGGCAATCCAGAGCTGGAGAGAAGGAAGAGGGTGGCATCTTACAACATGTATGCCACAGAAGGTAAGTTCAAGTCGTCGTTCCGCAACAGTTTTAAATGGATCAAGAGCAAGTTTGTTGACACCTTCTACGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

93

Amino Acids

10.64

Weight (kDa)

9.19

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 48 - 89 3.4e-21 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017968)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23170
malus_domestica MD15G1335800.v1.1
prunus_persica Prupe.6G166900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0117891
rosa_multiflora Rmu_sc0004968.1_g000013
rosa_roxburghii Rroxscaffold_2G00126120
rosa_rugosa Rorug02G0214800
rosa_samantha Rh2AG271100 Rh2DG279000 Rh2DG296900
rosa_wichuraiana Rw2G021440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 223
AclWI GGATC 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 186
AgeI ACCGGT 1 cut(s) 72
AgsI TTSAA 3 cut(s) 94, 135, 211
AhdI GACNNNNNGTC 1 cut(s) 127
AluBI AGCT 3 cut(s) 90, 108, 154
AluI AGCT 3 cut(s) 90, 108, 154
AlwI GGATC 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 34
AsiGI ACCGGT 1 cut(s) 72
AspS9I GGNCC 3 cut(s) 52, 70, 98
AsuC2I CCSGG 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 3 cut(s) 52, 70, 98
BbsI GAAGAC 1 cut(s) 123
BceAI ACGGC 1 cut(s) 127
BcnI CCSGG 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 25
Bme18I GGWCC 3 cut(s) 52, 70, 98
BmeRI GACNNNNNGTC 1 cut(s) 127
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 3 cut(s) 52, 70, 98
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 176
BpuMI CCSGG 1 cut(s) 25
BsaWI WCCGGW 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 72
BsiEI CGRYCG 1 cut(s) 77
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 2 cut(s) 24, 73
BsoBI CYCGRG 1 cut(s) 34
Bsp143I GATC 1 cut(s) 240
BspACI CCGC 1 cut(s) 223
BspPI GGATC 1 cut(s) 248
BspQI GCTCTTC 1 cut(s) 2
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssMI GATC 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 2 cut(s) 2, 161
BstKTI GATC 1 cut(s) 243
BstMBI GATC 1 cut(s) 240
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 72
Cfr13I GGNCC 3 cut(s) 52, 70, 98
CspAI ACCGGT 1 cut(s) 72
CviAII CATG 1 cut(s) 187
CviJI RGCY 4 cut(s) 90, 108, 119, 154
CviKI_1 RGCY 4 cut(s) 90, 108, 119, 154
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
DraI TTTAAA 1 cut(s) 235
DriI GACNNNNNGTC 1 cut(s) 127
Eam1104I CTCTTC 2 cut(s) 2, 161
Eam1105I GACNNNNNGTC 1 cut(s) 127
EarI CTCTTC 2 cut(s) 2, 161
Eco47I GGWCC 3 cut(s) 52, 70, 98
Eco88I CYCGRG 1 cut(s) 34
FaeI CATG 1 cut(s) 190
FaiI YATR 4 cut(s) 85, 87, 188, 192
FatI CATG 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 176
HapII CCGG 2 cut(s) 24, 73
Hin1II CATG 1 cut(s) 190
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HpaII CCGG 2 cut(s) 24, 73
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 2 cut(s) 149, 244
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 3 cut(s) 156, 194, 274
HpyCH4III ACNGT 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 1 cut(s) 240
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 6 cut(s) 37, 86, 114, 126, 140, 162
LweI GCATC 1 cut(s) 185
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 3 cut(s) 19, 123, 178
MmeI TCCRAC 1 cut(s) 79
MnlI CCTC 3 cut(s) 43, 61, 162
MseI TTAA 1 cut(s) 234
MspI CCGG 2 cut(s) 24, 73
MspR9I CCNGG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 36
NciI CCSGG 1 cut(s) 25
NdeII GATC 1 cut(s) 240
NlaIII CATG 1 cut(s) 190
NspI RCATGY 1 cut(s) 190
PaeR7I CTCGAG 1 cut(s) 34
PciI ACATGT 1 cut(s) 186
PciSI GCTCTTC 1 cut(s) 2
PinAI ACCGGT 1 cut(s) 72
PscI ACATGT 1 cut(s) 186
PspPI GGNCC 3 cut(s) 52, 70, 98
PspXI VCTCGAGB 1 cut(s) 34
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 3 cut(s) 52, 70, 98
ScrFI CCNGG 1 cut(s) 25
SetI ASST 6 cut(s) 54, 92, 110, 156, 205, 266
SfaNI GCATC 1 cut(s) 185
Sfr274I CTCGAG 1 cut(s) 34
SinI GGWCC 3 cut(s) 52, 70, 98
SlaI CTCGAG 1 cut(s) 34
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SsiI CCGC 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 2 cut(s) 35, 77
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
VpaK11BI GGWCC 3 cut(s) 52, 70, 98
XceI RCATGY 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.