Rroxscaffold_2G00126120

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017968
Physical Location & Seq
Forward (+)
61188057 .. 61188686
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00126120.1

Sequence Viewer

Length: 351 bp
ATGGAGAAGAGCAAATCATTTTCTGGGTACTACTCAACTGCATATACAGAGGCGAGGTTCGGGTTTGAGGATCGACCGAAATCTTACAGCTTCAATGGTCCGGTGAGCAAGGTGGAAGGACCATCTTCAGCATCAGGGTCTGGTAATAGTAATCCAGAGCTGGAGAGAAGGAAGAGGGTGGCAAACTATAACATGTATACCATGGAAGGTAAGTTCAAGTCGTCGCTGCGCAACAGTTTCAAATGGATCAAAGGCAAGTTTGTTGACAACTTCTATGACGAGATTGTATCGGTATCGGATTTGATGTTTTGGCTGGACTTGATTCAACTGTTAACATCTGTTGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

116

Amino Acids

13.2

Weight (kDa)

9.12

Isoelectric Point (pI)

29.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 50 - 91 5.2e-21 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017968)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23170
malus_domestica MD15G1335800.v1.1
prunus_persica Prupe.6G166900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0117891
rosa_multiflora Rmu_sc0004968.1_g000013
rosa_roxburghii Rroxscaffold_2G00126120
rosa_rugosa Rorug02G0214800
rosa_samantha Rh2AG271100 Rh2DG279000 Rh2DG296900
rosa_wichuraiana Rw2G021440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 230
AccI GTMKAC 1 cut(s) 197
AclWI GGATC 2 cut(s) 78, 254
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 4 cut(s) 94, 217, 241, 326
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 90, 160
AluI AGCT 2 cut(s) 90, 160
AlwI GGATC 2 cut(s) 78, 254
AlwNI CAGNNNCTG 1 cut(s) 140
ApeKI GCWGC 2 cut(s) 226, 344
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 98, 119
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 2 cut(s) 98, 119
BbvI GCAGC 1 cut(s) 213
BccI CCATC 1 cut(s) 130
BisI GCNGC 2 cut(s) 227, 345
BlsI GCNGC 2 cut(s) 228, 346
Bme18I GGWCC 2 cut(s) 98, 119
BmgT120I GGNCC 2 cut(s) 98, 119
BmsI GCATC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 101
Bsp143I GATC 2 cut(s) 70, 246
Bsp19I CCATGG 1 cut(s) 201
BspPI GGATC 2 cut(s) 78, 254
BspQI GCTCTTC 1 cut(s) 2
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 70, 246
BssNAI GTATAC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 201
Bst1107I GTATAC 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 236, 330
Bst6I CTCTTC 2 cut(s) 2, 167
BstDSI CCRYGG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 73, 249
BstMBI GATC 2 cut(s) 70, 246
BstMCI CGRYCG 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 201
CaiI CAGNNNCTG 1 cut(s) 140
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 98, 119
Csp6I GTAC 1 cut(s) 28
CviAII CATG 3 cut(s) 193, 202, 348
CviJI RGCY 3 cut(s) 90, 160, 313
CviKI_1 RGCY 3 cut(s) 90, 160, 313
CviQI GTAC 1 cut(s) 28
DpnI GATC 2 cut(s) 72, 248
DpnII GATC 2 cut(s) 70, 246
Eam1104I CTCTTC 2 cut(s) 2, 167
EarI CTCTTC 2 cut(s) 2, 167
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 2 cut(s) 98, 119
Eco57I CTGAAG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 3 cut(s) 196, 205, 351
FaiI YATR 8 cut(s) 43, 45, 189, 194, 198, 203, 276, 349
FatI CATG 3 cut(s) 192, 201, 347
FblI GTMKAC 1 cut(s) 197
Fnu4HI GCNGC 2 cut(s) 227, 345
Fsp4HI GCNGC 2 cut(s) 227, 345
FspI TGCGCA 1 cut(s) 230
GlaI GCGC 1 cut(s) 230
GluI GCNGC 2 cut(s) 227, 345
GsuI CTGGAG 1 cut(s) 182
HapII CCGG 1 cut(s) 101
HhaI GCGC 1 cut(s) 231
Hin1II CATG 3 cut(s) 196, 205, 351
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 2 cut(s) 265, 333
HindII GTYRAC 2 cut(s) 265, 333
HinfI GANTC 1 cut(s) 322
HpaI GTTAAC 1 cut(s) 333
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 3 cut(s) 198, 265, 333
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 3 cut(s) 198, 265, 333
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 3 cut(s) 110, 162, 200
HpyCH4III ACNGT 2 cut(s) 236, 330
HpyCH4V TGCA 2 cut(s) 41, 344
Hsp92II CATG 3 cut(s) 196, 205, 351
HspAI GCGC 1 cut(s) 229
KspAI GTTAAC 1 cut(s) 333
Kzo9I GATC 2 cut(s) 70, 246
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 7 cut(s) 9, 114, 120, 126, 146, 168, 299
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 1 cut(s) 140
MalI GATC 2 cut(s) 72, 248
MboI GATC 2 cut(s) 70, 246
MboII GAAGA 3 cut(s) 19, 117, 184
MnlI CCTC 4 cut(s) 43, 48, 61, 168
MseI TTAA 1 cut(s) 332
MspI CCGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 201
NdeII GATC 2 cut(s) 70, 246
NlaIII CATG 3 cut(s) 196, 205, 351
NsbI TGCGCA 1 cut(s) 230
NspI RCATGY 1 cut(s) 196
PciI ACATGT 1 cut(s) 192
PciSI GCTCTTC 1 cut(s) 2
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 2 cut(s) 228, 346
PscI ACATGT 1 cut(s) 192
PspPI GGNCC 2 cut(s) 98, 119
PstNI CAGNNNCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 1 cut(s) 332
SatI GCNGC 2 cut(s) 227, 345
Sau3AI GATC 2 cut(s) 70, 246
Sau96I GGNCC 2 cut(s) 98, 119
SetI ASST 5 cut(s) 59, 92, 114, 162, 211
SfaNI GCATC 1 cut(s) 140
SinI GGWCC 2 cut(s) 98, 119
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 236, 330
TaqI TCGA 1 cut(s) 73
TaqII GACCGA 1 cut(s) 91
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 1 cut(s) 332
Tru9I TTAA 1 cut(s) 332
TseI GCWGC 2 cut(s) 226, 344
VpaK11BI GGWCC 2 cut(s) 98, 119
XceI RCATGY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.