Rmu_sc0004968.1_g000013

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004968.1
OG0017968
Physical Location & Seq
Reverse (-)
27743 .. 28027
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004968.1_g000013.1.cds

Sequence Viewer

Length: 285 bp
atggagaagagcaaatcattttctgggtactactcaactgcatatacagaggcgaggttcgggtttgaggatcgacagaaatcttacagcttcaatggtccggtgagcaaggtagaagggccatcttcagcatcagggtctggtaatagtaatccagagctggagagaaggaagagggtggcaaactataacatgtataccatggaaggtaagttcaagtcgtcgctgcgcaacagtttcaaatggatcaaaggcaagtttgttgacaacttctatgacgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

94

Amino Acids

10.82

Weight (kDa)

9.49

Isoelectric Point (pI)

31.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017968)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23170
malus_domestica MD15G1335800.v1.1
prunus_persica Prupe.6G166900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0117891
rosa_multiflora Rmu_sc0004968.1_g000013
rosa_roxburghii Rroxscaffold_2G00126120
rosa_rugosa Rorug02G0214800
rosa_samantha Rh2AG271100 Rh2DG279000 Rh2DG296900
rosa_wichuraiana Rw2G021440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 230
AccI GTMKAC 1 cut(s) 197
AclWI GGATC 2 cut(s) 78, 254
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 1 cut(s) 29
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 3 cut(s) 94, 217, 241
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 90, 160
AluI AGCT 2 cut(s) 90, 160
AlwI GGATC 2 cut(s) 78, 254
AlwNI CAGNNNCTG 1 cut(s) 140
AoxI GGCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 98, 119
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 213
BccI CCATC 1 cut(s) 130
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 98, 119
BmsI GCATC 1 cut(s) 140
BpmI CTGGAG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 213
BshFI GGCC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 101
BsnI GGCC 1 cut(s) 121
Bsp143I GATC 2 cut(s) 70, 246
Bsp19I CCATGG 1 cut(s) 201
BspANI GGCC 1 cut(s) 121
BspPI GGATC 2 cut(s) 78, 254
BspQI GCTCTTC 1 cut(s) 2
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 70, 246
BssNAI GTATAC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 201
Bst1107I GTATAC 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 2 cut(s) 2, 167
BstDSI CCRYGG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 73, 249
BstMBI GATC 2 cut(s) 70, 246
BstNSI RCATGY 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 121
BtgI CCRYGG 1 cut(s) 201
CaiI CAGNNNCTG 1 cut(s) 140
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 98, 119
Csp6I GTAC 1 cut(s) 28
CviAII CATG 2 cut(s) 193, 202
CviJI RGCY 3 cut(s) 90, 121, 160
CviKI_1 RGCY 3 cut(s) 90, 121, 160
CviQI GTAC 1 cut(s) 28
DpnI GATC 2 cut(s) 72, 248
DpnII GATC 2 cut(s) 70, 246
Eam1104I CTCTTC 2 cut(s) 2, 167
EarI CTCTTC 2 cut(s) 2, 167
Eco130I CCWWGG 1 cut(s) 201
Eco47I GGWCC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 201
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 196, 205
FaiI YATR 7 cut(s) 43, 45, 189, 194, 198, 203, 276
FatI CATG 2 cut(s) 192, 201
FblI GTMKAC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 227
FspI TGCGCA 1 cut(s) 230
GlaI GCGC 1 cut(s) 230
GluI GCNGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 182
HaeIII GGCC 1 cut(s) 121
HapII CCGG 1 cut(s) 101
HhaI GCGC 1 cut(s) 231
Hin1II CATG 2 cut(s) 196, 205
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HpaII CCGG 1 cut(s) 101
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 2 cut(s) 198, 265
Hpy188III TCNNGA 1 cut(s) 155
Hpy8I GTNNAC 2 cut(s) 198, 265
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 3 cut(s) 110, 162, 200
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 41
Hsp92II CATG 2 cut(s) 196, 205
HspAI GCGC 1 cut(s) 229
Kzo9I GATC 2 cut(s) 70, 246
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 6 cut(s) 9, 114, 120, 126, 146, 168
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 1 cut(s) 140
MalI GATC 2 cut(s) 72, 248
MboI GATC 2 cut(s) 70, 246
MboII GAAGA 3 cut(s) 19, 117, 184
MnlI CCTC 4 cut(s) 43, 48, 61, 168
MspI CCGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 201
NdeII GATC 2 cut(s) 70, 246
NlaIII CATG 2 cut(s) 196, 205
NsbI TGCGCA 1 cut(s) 230
NspI RCATGY 1 cut(s) 196
PciI ACATGT 1 cut(s) 192
PciSI GCTCTTC 1 cut(s) 2
PkrI GCNGC 1 cut(s) 228
PscI ACATGT 1 cut(s) 192
PspPI GGNCC 2 cut(s) 98, 119
PstNI CAGNNNCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 2
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 2 cut(s) 70, 246
Sau96I GGNCC 2 cut(s) 98, 119
SetI ASST 5 cut(s) 59, 92, 114, 162, 211
SfaNI GCATC 1 cut(s) 140
SinI GGWCC 1 cut(s) 98
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 73
TseI GCWGC 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 98
XceI RCATGY 1 cut(s) 196
XmiI GTMKAC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.