FvH4_1g24360

Photosystem I reaction center subunit N

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014548
Physical Location & Seq
Forward (+)
16228603 .. 16229289
687 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24360.t1

Sequence Viewer

Length: 486 bp
ATGGCAGCCATGAACTCTAGCGTTTTGGCAAGTAACTATGCCATCTCTGGCAGCAGTGCAATACTTGCTGAAGGCAATGGGAAGATGACCTCCATGCCTCAGAGAGTAGCCATGCCTGTGATCAGGGCACAACATCAAGAGTCGCAAAGCGTTGGAGGAAGAAGAGCTGCACTGCTCTTCCTCACCGCCACTGCTGCTGCCGTTGCCTCCAACTCCATCGCCAATGCCGGCGTCATTGATGACTACCTGGAGAAGAGCAAGACCAACAAGGAACTCAATGACAAGAAGAGGCTGGCAACAAGTGGAGCAAACTTTGCAAGAGCATTCACTGTTCAGTTTGGGACTTGCAAATTCCCTGAGAACTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGTGCCATTTCTCTCTGACGATCTGAGTTTGGAATGCGAAGGCAAGGACAAGTACAAGTGTGGTTCCAATGTATTCTGGAAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0019904
KEGG Pathways
Metabolic & Signaling
ko00195 ko01100 map00195 map01100
Pfam Domains
Protein Families
PsaN

Protein Analysis

162

Amino Acids

17.34

Weight (kDa)

9.23

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsaN PF05479 41 - 161 1.4e-62 Photosystem I reaction centre subunit N (PSAN or PSI-N)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014548)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G64040 AT5G64040
fragaria_vesca FvH4_1g24360
malus_domestica MD01G1004300.v1.1 MD15G1441800.v1.1
prunus_persica Prupe.4G271200_v2.0.a1
pyrus_communis pycom01g02140
rosa_chinensis RchiOBHm_Chr2g0120891
rosa_laevigata RLG00000018599
rosa_multiflora Rmu_ssc0000077.1_g000001
rosa_roxburghii Rroxscaffold_2G00122760
rosa_rugosa Rorug02G0232500
rosa_samantha Rh2AG288900 Rh2BG299900 Rh2CG277900 Rh2DG314100
rosa_wichuraiana Rw2G023140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 186
AcsI RAATTY 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 452
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
ApeKI GCWGC 6 cut(s) 5, 51, 167, 194, 197, 372
ApoI RAATTY 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 175
BaeGI GKGCMC 1 cut(s) 130
BbvI GCAGC 6 cut(s) 17, 63, 154, 181, 184, 359
BccI CCATC 2 cut(s) 50, 224
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 248
BclI TGATCA 1 cut(s) 120
BfaI CTAG 1 cut(s) 18
BglII AGATCT 1 cut(s) 379
BisI GCNGC 6 cut(s) 6, 52, 168, 195, 198, 373
BlsI GCNGC 6 cut(s) 7, 53, 169, 196, 199, 374
Bme1390I CCNGG 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 463
BmrFI CCNGG 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 231
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 248
BseMI GCAATG 1 cut(s) 82
BseMII CTCAG 3 cut(s) 113, 348, 413
BseNI ACTGG 1 cut(s) 373
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 6 cut(s) 17, 63, 154, 181, 184, 359
BsgI GTGCAG 1 cut(s) 153
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 355
BsmI GAATGC 2 cut(s) 323, 437
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 3 cut(s) 120, 379, 418
BspACI CCGC 1 cut(s) 186
BspCNI CTCAG 3 cut(s) 112, 349, 414
BspLI GGNNCC 1 cut(s) 463
BspQI GCTCTTC 3 cut(s) 157, 182, 248
BsrDI GCAATG 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 227
BssMI GATC 3 cut(s) 120, 379, 418
BssNI GRCGYC 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 4 cut(s) 157, 182, 248, 281
BstACI GRCGYC 1 cut(s) 231
BstAPI GCANNNNNTGC 2 cut(s) 65, 314
BstC8I GCNNGC 2 cut(s) 229, 294
BstDEI CTNAG 3 cut(s) 99, 357, 422
BstKTI GATC 3 cut(s) 123, 382, 421
BstMBI GATC 3 cut(s) 120, 379, 418
BstMWI GCNNNNNNNGC 4 cut(s) 65, 194, 203, 314
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 6 cut(s) 17, 63, 154, 181, 184, 359
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BtgZI GCGATG 1 cut(s) 202
BtsI GCAGTG 3 cut(s) 61, 170, 189
BtsIMutI CAGTG 5 cut(s) 61, 170, 189, 327, 366
Cac8I GCNNGC 2 cut(s) 229, 294
Cfr10I RCCGGY 1 cut(s) 227
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 451
CviAII CATG 3 cut(s) 10, 94, 112
CviJI RGCY 5 cut(s) 8, 110, 167, 292, 372
CviKI_1 RGCY 5 cut(s) 8, 110, 167, 292, 372
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 3 cut(s) 99, 357, 422
DpnI GATC 3 cut(s) 122, 381, 420
DpnII GATC 3 cut(s) 120, 379, 418
Eam1104I CTCTTC 4 cut(s) 157, 182, 248, 281
EarI CTCTTC 4 cut(s) 157, 182, 248, 281
Eco57I CTGAAG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 246
FaeI CATG 3 cut(s) 13, 97, 115
FaiI YATR 4 cut(s) 11, 39, 95, 113
FaqI GGGAC 1 cut(s) 355
FatI CATG 3 cut(s) 9, 93, 111
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 6 cut(s) 6, 52, 168, 195, 198, 373
Fsp4HI GCNGC 6 cut(s) 6, 52, 168, 195, 198, 373
FspBI CTAG 1 cut(s) 18
GluI GCNGC 6 cut(s) 6, 52, 168, 195, 198, 373
GsuI CTGGAG 1 cut(s) 269
HapII CCGG 1 cut(s) 228
HgaI GACGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 3 cut(s) 13, 97, 115
HinfI GANTC 1 cut(s) 140
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 175
Hpy188I TCNGA 3 cut(s) 102, 415, 423
Hpy188III TCNNGA 2 cut(s) 137, 475
HpyAV CCTTC 2 cut(s) 65, 431
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4V TGCA 4 cut(s) 59, 170, 317, 348
HpyF10VI GCNNNNNNNGC 4 cut(s) 65, 194, 203, 314
HpyF3I CTNAG 3 cut(s) 99, 357, 422
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 3 cut(s) 13, 97, 115
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 3 cut(s) 120, 379, 418
LguI GCTCTTC 3 cut(s) 157, 182, 248
LmnI GCTCC 1 cut(s) 305
Lsp1109I GCAGC 6 cut(s) 17, 63, 154, 181, 184, 359
MaeI CTAG 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 32
MalI GATC 3 cut(s) 122, 381, 420
MboI GATC 3 cut(s) 120, 379, 418
MboII GAAGA 6 cut(s) 94, 169, 171, 174, 265, 298
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 1 cut(s) 350
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 133, 234
MnlI CCTC 6 cut(s) 100, 108, 149, 191, 217, 282
MroNI GCCGGC 1 cut(s) 227
MslI CAYNNNNRTG 1 cut(s) 116
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 2 cut(s) 323, 437
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 4 cut(s) 65, 194, 203, 314
NaeI GCCGGC 1 cut(s) 229
NdeII GATC 3 cut(s) 120, 379, 418
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 3 cut(s) 13, 97, 115
NlaIV GGNNCC 1 cut(s) 463
PciSI GCTCTTC 3 cut(s) 157, 182, 248
PctI GAATGC 2 cut(s) 323, 437
PdiI GCCGGC 1 cut(s) 229
PkrI GCNGC 6 cut(s) 7, 53, 169, 196, 199, 374
PleI GAGTC 1 cut(s) 148
PpsI GAGTC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 463
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 116
SapI GCTCTTC 3 cut(s) 157, 182, 248
SatI GCNGC 6 cut(s) 6, 52, 168, 195, 198, 373
Sau3AI GATC 3 cut(s) 120, 379, 418
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 130
SetI ASST 3 cut(s) 92, 169, 249
SmiMI CAYNNNNRTG 1 cut(s) 116
Sse9I AATT 1 cut(s) 350
SsiI CCGC 1 cut(s) 186
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 331
TasI AATT 1 cut(s) 350
TatI WGTACW 1 cut(s) 450
TscAI CASTG 5 cut(s) 61, 177, 196, 334, 373
TseI GCWGC 6 cut(s) 5, 51, 167, 194, 197, 372
TspDTI ATGAA 1 cut(s) 26
TspRI CASTG 5 cut(s) 61, 177, 196, 334, 373
XapI RAATTY 1 cut(s) 350
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.