Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014548

Physical Location & Seq

Genomic Coordinates Forward (+)

1794853 .. 1795694

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g02140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCTGAACTTGTCAATGCAAAGACGACTTGCATGCCTTCAGTTGTATCAGCTGCTCAGACCAAAGTTGTAGCACTCAGGGCCCAACAGCCTAGCACACAAAATAATCAAGGAGCTGATGGAAGAAGGGCTGTGCTGCTTTCCCTGGCGGCCATTGCTTTCACCGCTGTTTCTTCCAACTCCGCTGCCAATGCCGGTGTCATTGATGATTACCTCGAAAAAAGCAAAGCCAACAAGGAACTGAATGACAAGAAGAGGCTGGCAACGAGCGGTGCAAACTTTGCAAGAGCATTCACTGTTCAATTTGGAACATGTAAGTTCCCGGAGAACTTCACTGGCTGCCAAGATCTTGCCAAGCAAAAGAAAGTACCATTTCTCTCTGACGATCTTAGTTTGGAGTGCGAAGGCAAGGACAAGTACAAGTGTGGTTCCAACGTTTTCTGGAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsaN

Protein Analysis

151

Amino Acids

16.22

Weight (kDa)

9.15

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014548)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64040 AT5G64040
fragaria_vesca	FvH4_1g24360
malus_domestica	MD01G1004300.v1.1 MD15G1441800.v1.1
prunus_persica	Prupe.4G271200_v2.0.a1
pyrus_communis	pycom01g02140
rosa_chinensis	RchiOBHm_Chr2g0120891
rosa_laevigata	RLG00000018599
rosa_multiflora	Rmu_ssc0000077.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122760
rosa_rugosa	Rorug02G0232500
rosa_samantha	Rh2AG288900 Rh2BG299900 Rh2CG277900 Rh2DG314100
rosa_wichuraiana	Rw2G023140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	270
AciI	CCGC	4 cut(s)	149, 165, 183, 270
AclI	AACGTT	1 cut(s)	435
AcoI	YGGCCR	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	24
AfaI	GTAC	2 cut(s)	369, 419
AflIII	ACRYGT	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	2 cut(s)	53, 116
AluI	AGCT	2 cut(s)	53, 116
AoxI	GGCC	2 cut(s)	81, 150
ApaI	GGGCCC	1 cut(s)	85
ApeKI	GCWGC	4 cut(s)	53, 136, 185, 339
AspS9I	GGNCC	2 cut(s)	81, 82
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	85
BanII	GRGCYC	1 cut(s)	85
BbvI	GCAGC	4 cut(s)	40, 123, 172, 326
BccI	CCATC	1 cut(s)	113
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	323
BfaI	CTAG	1 cut(s)	93
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	5 cut(s)	54, 137, 150, 186, 340
BlsI	GCNGC	5 cut(s)	55, 138, 151, 187, 341
Bme1390I	CCNGG	2 cut(s)	146, 323
BmgT120I	GGNCC	2 cut(s)	81, 82
BmiI	GGNNCC	2 cut(s)	83, 430
BmrFI	CCNGG	2 cut(s)	146, 323
BpuMI	CCSGG	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	71, 91
BseNI	ACTGG	1 cut(s)	340
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	4 cut(s)	40, 123, 172, 326
BshFI	GGCC	2 cut(s)	83, 152
BsiSI	CCGG	2 cut(s)	195, 323
BsmI	GAATGC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	83, 152
Bsp120I	GGGCCC	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	346, 385
BspACI	CCGC	4 cut(s)	149, 165, 183, 270
BspANI	GGCC	2 cut(s)	83, 152
BspCNI	CTCAG	2 cut(s)	70, 90
BspLI	GGNNCC	2 cut(s)	83, 430
BsrBI	CCGCTC	1 cut(s)	270
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	2 cut(s)	346, 385
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	2 cut(s)	35, 261
BstDEI	CTNAG	3 cut(s)	57, 77, 389
BstKTI	GATC	2 cut(s)	349, 388
BstMBI	GATC	2 cut(s)	346, 385
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 155, 164, 191, 281
BstNI	CCWGG	1 cut(s)	146
BstNSI	RCATGY	2 cut(s)	37, 315
BstSCI	CCNGG	2 cut(s)	144, 321
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	4 cut(s)	40, 123, 172, 326
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	2 cut(s)	83, 152
BtsIMutI	CAGTG	2 cut(s)	294, 333
Cac8I	GCNNGC	2 cut(s)	35, 261
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	2 cut(s)	81, 82
Csp6I	GTAC	2 cut(s)	368, 418
CviAII	CATG	2 cut(s)	34, 312
CviJI	RGCY	9 cut(s)	53, 83, 91, 116, 131, 152, 230, 259, 339
CviKI_1	RGCY	9 cut(s)	53, 83, 91, 116, 131, 152, 230, 259, 339
CviQI	GTAC	2 cut(s)	368, 418
DdeI	CTNAG	3 cut(s)	57, 77, 389
DpnI	GATC	2 cut(s)	348, 387
DpnII	GATC	2 cut(s)	346, 385
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco24I	GRGCYC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	85
FaeI	CATG	2 cut(s)	37, 315
FaiI	YATR	2 cut(s)	35, 313
FatI	CATG	2 cut(s)	33, 311
Fnu4HI	GCNGC	5 cut(s)	54, 137, 150, 186, 340
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	5 cut(s)	54, 137, 150, 186, 340
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	5 cut(s)	54, 137, 150, 186, 340
HaeIII	GGCC	2 cut(s)	83, 152
HapII	CCGG	2 cut(s)	195, 323
Hin1II	CATG	2 cut(s)	37, 315
HpaII	CCGG	2 cut(s)	195, 323
HphI	GGTGA	1 cut(s)	154
Hpy188I	TCNGA	3 cut(s)	7, 60, 382
Hpy188III	TCNNGA	1 cut(s)	442
HpyAV	CCTTC	3 cut(s)	48, 120, 398
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	4 cut(s)	20, 33, 275, 284
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 155, 164, 191, 281
HpyF3I	CTNAG	3 cut(s)	57, 77, 389
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	2 cut(s)	37, 315
Kzo9I	GATC	2 cut(s)	346, 385
LmnI	GCTCC	1 cut(s)	113
LpnPI	CCDG	8 cut(s)	64, 131, 158, 208, 245, 321, 336, 427
Lsp1109I	GCAGC	4 cut(s)	40, 123, 172, 326
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	435
MalI	GATC	2 cut(s)	348, 387
MbiI	CCGCTC	1 cut(s)	270
MboI	GATC	2 cut(s)	346, 385
MboII	GAAGA	3 cut(s)	135, 165, 265
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	2 cut(s)	224, 249
MspA1I	CMGCKG	3 cut(s)	53, 167, 185
MspI	CCGG	2 cut(s)	195, 323
MspR9I	CCNGG	2 cut(s)	146, 323
Mva1269I	GAATGC	1 cut(s)	290
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	5 cut(s)	80, 155, 164, 191, 281
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	2 cut(s)	346, 385
NlaIII	CATG	2 cut(s)	37, 315
NlaIV	GGNNCC	2 cut(s)	83, 430
NspI	RCATGY	2 cut(s)	37, 315
PaeI	GCATGC	1 cut(s)	37
PciI	ACATGT	1 cut(s)	311
PctI	GAATGC	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	5 cut(s)	55, 138, 151, 187, 341
PscI	ACATGT	1 cut(s)	311
Psp1406I	AACGTT	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	83, 430
PspOMI	GGGCCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	81, 82
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	2 cut(s)	369, 419
RsaNI	GTAC	2 cut(s)	368, 418
SatI	GCNGC	5 cut(s)	54, 137, 150, 186, 340
Sau3AI	GATC	2 cut(s)	346, 385
Sau96I	GGNCC	2 cut(s)	81, 82
ScrFI	CCNGG	2 cut(s)	146, 323
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	4 cut(s)	55, 118, 216, 438
SphI	GCATGC	1 cut(s)	37
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	4 cut(s)	149, 165, 183, 270
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	144, 321
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	1 cut(s)	216
TasI	AATT	1 cut(s)	302
TatI	WGTACW	1 cut(s)	417
TauI	GCSGC	1 cut(s)	152
TscAI	CASTG	2 cut(s)	301, 340
TseI	GCWGC	4 cut(s)	53, 136, 185, 339
TspRI	CASTG	2 cut(s)	301, 340
XceI	RCATGY	2 cut(s)	37, 315
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.