FvH4_1g24541

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018786
Physical Location & Seq
Reverse (-)
16376807 .. 16380486
3680 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24541.t1

Sequence Viewer

Length: 450 bp
ATGGATCTAGGTTATCTTTGGAGGAGTTCCATTCGGGCGGTGGTTGGGTTTGTCTTGCCGACTCTTTTGGGTTGTTTTTGGCTTCTTCCGCCTTCCAAAGGTACACGGGTCAACAGTGGTGGCTACCTGGATAGTGATCGCATTGATTCGGTCTTAATCCCATTTACTCAGACAACAGTCGTCAGTGTCGGGACAAAACATCCATGGTCACAAGAGCAGAAATTGCTCCATGGTTTAGGTAAAAAAGGACTTACGGTTTGGTTGGCTTTTAATGATAATGTCTTCTCTGGATATGATGTTAATATTATATCCCTGAAGGAAAGACATGGTCTTCCTCTGCCTCATAGCAATCTTTTGCCCGTCTCAGGACTCGAAGGAAACCAGTTGGCTGAGAAGGCAAATGTGTTGCAAAGTGTGTTGCATTTTGGAGGTATCAGATTAAATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.35

Weight (kDa)

9.21

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018786)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24541 FvH4_3g42590 FvH4_4g06980 FvH4_4g06980 FvH4_4g06980 FvH4_6g21910 FvH4_6g48160
rosa_chinensis RchiOBHm_Chr4g0414271
rosa_samantha Rh4CG197000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 38, 89
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 1 cut(s) 103
AfiI CCNNNNNNNGG 2 cut(s) 98, 365
AjnI CCWGG 1 cut(s) 126
Alw26I GTCTC 1 cut(s) 367
AlwI GGATC 1 cut(s) 12
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
BaeI ACNNNNGTAYC 2 cut(s) 93, 126
BbsI GAAGAC 2 cut(s) 274, 323
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 1 cut(s) 8
Bme1390I CCNGG 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 128
BoxI GACNNNNGTC 1 cut(s) 176
BpiI GAAGAC 2 cut(s) 274, 323
BsaBI GATNNNNATC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 203, 229
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 365
Bse1I ACTGG 1 cut(s) 382
Bse8I GATNNNNATC 1 cut(s) 135
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 203, 229
BseGI GGATG 1 cut(s) 199
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 2 cut(s) 98, 365
BseMII CTCAG 3 cut(s) 182, 378, 381
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 2 cut(s) 98, 365
BsmAI GTCTC 1 cut(s) 367
BsmBI CGTCTC 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 205
Bsp143I GATC 2 cut(s) 4, 136
Bsp19I CCATGG 2 cut(s) 203, 229
BspACI CCGC 2 cut(s) 38, 89
BspCNI CTCAG 3 cut(s) 181, 377, 382
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 382
BssECI CCNNGG 2 cut(s) 203, 229
BssMI GATC 2 cut(s) 4, 136
BssT1I CCWWGG 2 cut(s) 203, 229
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 3 cut(s) 116, 178, 256
BstAPI GCANNNNNTGC 1 cut(s) 223
BstDEI CTNAG 3 cut(s) 168, 364, 390
BstDSI CCRYGG 2 cut(s) 203, 229
BstENI CCTNNNNNAGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 199
BstKTI GATC 2 cut(s) 7, 139
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 2 cut(s) 4, 136
BstMWI GCNNNNNNNGC 3 cut(s) 88, 223, 395
BstNI CCWGG 1 cut(s) 128
BstPAI GACNNNNGTC 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 126
BstV2I GAAGAC 2 cut(s) 274, 323
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BtgI CCRYGG 2 cut(s) 203, 229
BtsCI GGATG 1 cut(s) 199
BtsIMutI CAGTG 2 cut(s) 121, 190
Csp6I GTAC 1 cut(s) 102
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 3 cut(s) 204, 230, 326
CviJI RGCY 4 cut(s) 82, 123, 266, 389
CviKI_1 RGCY 4 cut(s) 82, 123, 266, 389
CviQI GTAC 1 cut(s) 102
DdeI CTNAG 3 cut(s) 168, 364, 390
DpnI GATC 2 cut(s) 6, 138
DpnII GATC 2 cut(s) 4, 136
EciI GGCGGA 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 203, 229
Eco57I CTGAAG 1 cut(s) 335
EcoNI CCTNNNNNAGG 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 2 cut(s) 203, 229
ErhI CCWWGG 2 cut(s) 203, 229
Esp3I CGTCTC 1 cut(s) 367
FaeI CATG 3 cut(s) 207, 233, 329
FaiI YATR 6 cut(s) 205, 231, 294, 308, 327, 345
FaqI GGGAC 1 cut(s) 205
FatI CATG 3 cut(s) 203, 229, 325
FokI GGATG 1 cut(s) 186
FspBI CTAG 1 cut(s) 8
Hin1II CATG 3 cut(s) 207, 233, 329
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 3 cut(s) 61, 146, 369
Hpy166II GTNNAC 2 cut(s) 104, 112
Hpy188I TCNGA 2 cut(s) 171, 437
Hpy188III TCNNGA 3 cut(s) 190, 288, 366
Hpy8I GTNNAC 2 cut(s) 104, 112
HpyAV CCTTC 4 cut(s) 102, 310, 368, 388
HpyCH4III ACNGT 3 cut(s) 116, 178, 256
HpyCH4V TGCA 2 cut(s) 409, 421
HpyF10VI GCNNNNNNNGC 3 cut(s) 88, 223, 395
HpyF3I CTNAG 3 cut(s) 168, 364, 390
Hsp92II CATG 3 cut(s) 207, 233, 329
Kzo9I GATC 2 cut(s) 4, 136
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 6 cut(s) 113, 140, 273, 326, 351, 395
MaeI CTAG 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 207
MalI GATC 2 cut(s) 6, 138
MboI GATC 2 cut(s) 4, 136
MboII GAAGA 3 cut(s) 77, 274, 323
MflI RGATCY 1 cut(s) 4
MluCI AATT 1 cut(s) 221
MlyI GAGTC 2 cut(s) 55, 363
MnlI CCTC 4 cut(s) 15, 345, 351, 422
MseI TTAA 4 cut(s) 155, 270, 300, 440
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 3 cut(s) 88, 223, 395
NcoI CCATGG 2 cut(s) 203, 229
NdeII GATC 2 cut(s) 4, 136
NlaIII CATG 3 cut(s) 207, 233, 329
NmuCI GTSAC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 146
PflFI GACNNNGTC 1 cut(s) 327
PleI GAGTC 2 cut(s) 55, 363
PpsI GAGTC 2 cut(s) 55, 363
PshAI GACNNNNGTC 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 327
RsaI GTAC 1 cut(s) 103
RsaNI GTAC 1 cut(s) 102
SaqAI TTAA 4 cut(s) 155, 270, 300, 440
Sau3AI GATC 2 cut(s) 4, 136
SchI GAGTC 2 cut(s) 55, 363
ScrFI CCNGG 1 cut(s) 128
SetI ASST 5 cut(s) 13, 103, 129, 241, 433
Sse9I AATT 1 cut(s) 221
SsiI CCGC 2 cut(s) 38, 89
SspI AATATT 1 cut(s) 304
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 2 cut(s) 203, 229
TaaI ACNGT 3 cut(s) 116, 178, 256
TaqI TCGA 1 cut(s) 372
TaqII GACCGA 1 cut(s) 139
TasI AATT 1 cut(s) 221
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 4 cut(s) 155, 270, 300, 440
Tru9I TTAA 4 cut(s) 155, 270, 300, 440
TscAI CASTG 2 cut(s) 121, 190
TseFI GTSAC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 207
TspRI CASTG 2 cut(s) 121, 190
Tth111I GACNNNGTC 1 cut(s) 327
XagI CCTNNNNNAGG 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 37
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.