FvH4_3g42590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018786
Physical Location & Seq
Reverse (-)
35585533 .. 35587883
2351 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42590.t1

Sequence Viewer

Length: 639 bp
ATGTTATTGTTGTTGCGTGACCTGATACTTTCATTCCACGAAGTTGCTCTGTGTCTCATCAAGAGGTTAAACCCATTCTCCACGCGTTGGAGCTTGATATATTTTTTTTTCCTCTCTCGCTCTCTCCGGTCTCTCTGTCTCAGCAATCTCTTGCGCATGATGCTGGAGACGAAGAAAAAGGATGACCGATTCCGATCAAACCCGAGCCAAGGTGAAAGAATTCCGATCTGGAGGTATTATCTTCATCTCATATTCTTGAATGTTACTCCCTTCTTCTCTTCATTGAGCCTCTCCTTATTCAGGTTATCTTTGGGGGAGTTCCATTCGGGCGGTGCTTCGGGTTTGGTGGTTGGGTTTGTCTTGCCGACGCTTTTGGGTTGCTTTTGGCTTCTTCCGTCTTCCATAGGTGCACGGGTCAATGGGTTTTTCTCCCTATTTCTGTTCACATGGTGTCGACCAAAAACTGGGTTAGATTTGCTATTTGGGTTATTGGTCTGGGTCATTGGAACAAGGCGAGGCTTGGTTTTCTATGAACTCAAGGGAGCAAAACAAAGTCTAAATGCAAAGAAGAATCGGAATGATTTGGACCTTTTTGTTTCACGAACTCCCCAGCAATATCCTGAAGTGTGTTTTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

24.52

Weight (kDa)

10.14

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018786)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g24541 FvH4_3g42590 FvH4_4g06980 FvH4_4g06980 FvH4_4g06980 FvH4_6g21910 FvH4_6g48160
rosa_chinensis RchiOBHm_Chr4g0414271
rosa_samantha Rh4CG197000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 155
AccB7I CCANNNNNTGG 2 cut(s) 87, 464
AccI GTMKAC 1 cut(s) 454
AccII CGCG 1 cut(s) 85
AciI CCGC 1 cut(s) 330
AcsI RAATTY 1 cut(s) 219
AdeI CACNNNGTG 1 cut(s) 450
AfiI CCNNNNNNNGG 4 cut(s) 87, 209, 300, 464
AflIII ACRYGT 1 cut(s) 83
AgsI TTSAA 1 cut(s) 259
AluBI AGCT 1 cut(s) 93
AluI AGCT 1 cut(s) 93
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 4 cut(s) 59, 135, 143, 161
Alw44I GTGCAC 1 cut(s) 408
Ama87I CYCGRG 1 cut(s) 202
ApaLI GTGCAC 1 cut(s) 408
ApoI RAATTY 1 cut(s) 219
Asp700I GAANNNNTTC 1 cut(s) 219
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 586
AsuHPI GGTGA 1 cut(s) 224
AvaI CYCGRG 1 cut(s) 202
AvaII GGWCC 1 cut(s) 586
BaeGI GKGCMC 1 cut(s) 412
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 412
BcoDI GTCTC 4 cut(s) 59, 135, 143, 161
Bme18I GGWCC 1 cut(s) 586
BmeT110I CYCGRG 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 586
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 150
BmuI ACTGGG 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 390
BpmI CTGGAG 2 cut(s) 185, 250
BpuEI CTTGAG 1 cut(s) 521
BsaBI GATNNNNATC 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 208
BsaWI WCCGGW 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 209, 300, 464
Bse1I ACTGG 1 cut(s) 469
Bse8I GATNNNNATC 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 1 cut(s) 193
BseLI CCNNNNNNNGG 4 cut(s) 87, 209, 300, 464
BseMII CTCAG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 469
BseSI GKGCMC 1 cut(s) 412
BseYI CCCAGC 1 cut(s) 609
Bsh1236I CGCG 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 127
BslI CCNNNNNNNGG 4 cut(s) 87, 209, 300, 464
BsmAI GTCTC 4 cut(s) 59, 135, 143, 161
BsmBI CGTCTC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 135
BsoBI CYCGRG 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 2 cut(s) 194, 225
BspACI CCGC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 135
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 1 cut(s) 208
BssMI GATC 2 cut(s) 194, 225
BssT1I CCWWGG 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 140
BstENI CCTNNNNNAGG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 187
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 2 cut(s) 197, 228
BstMAI GTCTC 4 cut(s) 59, 135, 143, 161
BstMBI GATC 2 cut(s) 194, 225
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 412
BstUI CGCG 1 cut(s) 85
BstV2I GAAGAC 1 cut(s) 390
BtsCI GGATG 1 cut(s) 187
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 586
CseI GACGC 1 cut(s) 376
CviAII CATG 2 cut(s) 157, 447
CviJI RGCY 5 cut(s) 93, 207, 288, 388, 519
CviKI_1 RGCY 5 cut(s) 93, 207, 288, 388, 519
DdeI CTNAG 1 cut(s) 140
DpnI GATC 2 cut(s) 196, 227
DpnII GATC 2 cut(s) 194, 225
DraIII CACNNNGTG 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 586
Eco88I CYCGRG 1 cut(s) 202
EcoNI CCTNNNNNAGG 1 cut(s) 298
EcoRI GAATTC 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 2 cut(s) 160, 450
FaiI YATR 6 cut(s) 100, 158, 251, 404, 448, 531
FatI CATG 2 cut(s) 156, 446
FblI GTMKAC 1 cut(s) 454
FokI GGATG 1 cut(s) 194
FspI TGCGCA 1 cut(s) 155
GlaI GCGC 1 cut(s) 155
GsaI CCCAGC 1 cut(s) 613
GsuI CTGGAG 2 cut(s) 185, 250
HapII CCGG 1 cut(s) 127
HgaI GACGC 1 cut(s) 376
HhaI GCGC 1 cut(s) 156
Hin1II CATG 2 cut(s) 160, 450
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HincII GTYRAC 1 cut(s) 455
HindII GTYRAC 1 cut(s) 455
HinfI GANTC 2 cut(s) 189, 571
HpaII CCGG 1 cut(s) 127
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 3 cut(s) 410, 444, 455
Hpy188I TCNGA 3 cut(s) 194, 225, 576
Hpy188III TCNNGA 5 cut(s) 61, 229, 256, 600, 620
Hpy8I GTNNAC 3 cut(s) 410, 444, 455
Hpy99I CGWCG 1 cut(s) 370
HpyAV CCTTC 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 410, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 1 cut(s) 140
Hsp92II CATG 2 cut(s) 160, 450
HspAI GCGC 1 cut(s) 154
Kzo9I GATC 2 cut(s) 194, 225
LmnI GCTCC 2 cut(s) 90, 542
LpnPI CCDG 9 cut(s) 35, 140, 149, 214, 286, 450, 481, 623, 633
LweI GCATC 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 17, 262
MalI GATC 2 cut(s) 196, 227
MboI GATC 2 cut(s) 194, 225
MboII GAAGA 7 cut(s) 184, 233, 265, 270, 383, 390, 580
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 1 cut(s) 219
MluI ACGCGT 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 68
MnlI CCTC 5 cut(s) 57, 122, 225, 299, 509
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 1 cut(s) 68
MspI CCGG 1 cut(s) 127
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 160
NdeII GATC 2 cut(s) 194, 225
NlaIII CATG 2 cut(s) 160, 450
NmuCI GTSAC 1 cut(s) 17
NsbI TGCGCA 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 2 cut(s) 189, 571
PflMI CCANNNNNTGG 2 cut(s) 87, 464
PspFI CCCAGC 1 cut(s) 609
PspPI GGNCC 1 cut(s) 586
SalI GTCGAC 1 cut(s) 453
SaqAI TTAA 1 cut(s) 68
Sau3AI GATC 2 cut(s) 194, 225
Sau96I GGNCC 1 cut(s) 586
SduI GDGCHC 1 cut(s) 412
SetI ASST 8 cut(s) 24, 68, 95, 214, 236, 305, 409, 591
SfaNI GCATC 1 cut(s) 150
SinI GGWCC 1 cut(s) 586
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 1 cut(s) 219
SsiI CCGC 1 cut(s) 330
StyI CCWWGG 1 cut(s) 208
TaqI TCGA 1 cut(s) 454
TaqII GACCGA 1 cut(s) 201
TasI AATT 1 cut(s) 219
TfiI GAWTC 2 cut(s) 189, 571
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 4 cut(s) 21, 233, 270, 546
TspGWI ACGGA 1 cut(s) 384
Van91I CCANNNNNTGG 2 cut(s) 87, 464
VneI GTGCAC 1 cut(s) 408
VpaK11BI GGWCC 1 cut(s) 586
XagI CCTNNNNNAGG 1 cut(s) 298
XapI RAATTY 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 454
XmnI GAANNNNTTC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.