Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0018786

Physical Location & Seq

Genomic Coordinates Forward (+)

36324296 .. 36327351

Gene Structure 3056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGAACACAAGCGTGTTTGCCTATTTAGTCCTGTTGTTTTGGGTTTCCTCATTTGTTCCTGGAAATTGGATGAAAGTTTCTGTGTCAGTTTGGTTGCCTTTTAGTGATAATGTCTTCTCTGGATATGATGTTAAGATTATATCCCTGAAGGAAAGACATGGTCTTCCACTGCCTCATAGCAATCTTTTGCCCGTCCCTGAACTCGAAGGAAACCAGTTGGCTGAGAAGGCAGAACGATGTATCAGAGAGCAAAAGGCACTTAATAATGGTTTGCTTGTCGACCCTCATGATCAGCAATCAATTTCTAACGCATTGCTGAAGTTGTTATCGGAAAAGAATTTATGGGTTGACTGTAGAAAGAATGGATGGAAAAACATACACCTTTTCTCATGGCCTGAACACTGCCGAACCTACTTGACTAGCGTAGCAGCCTGCTGCATGAGATATCCACAGTGGCAGACTGACACTCCGGAGGATGAAATGGCTGCTGAGGAGTCCTTCAATGACTCTCTCAGGGACATGCAAGATATGTCTCTTAGGCTCTCAGTTGATGGGGACAAATCCTCACTGAATGAATCTCTAGATGTGACTACAACTTCTGGTGACCATGAGGTGCAAGATCAAGTGAAGTGTGTCCTAAGCAAGATGAAGAAGTCGGATTCTGGTCCAGACGACCATGAAGACGGAAATAAGCTGCCGGATAATGTATCCAGCAAGTATCTTTTGTTAAGACATAGAAGAAAATTGATTGTCATAGCACTTGATTGCTATGACCAATCTGGAGCGCCTGATAAGAAAATTATTCAAGTTGTGCAAGAAATATTTAAGGCTGTAAGACTAGATTCTCAAAGCGCAAGATTTACAGGGTTTGCTCTGCTGACGGCTATGCCGGCTTTGGAGACGGTAGAGTTTTTGGCATCAGGGAAGATTCAGGCAAATGAGTTTGATGCTTTGGTTTGTAGCAGTGGAAGCGAGAAAACCATTTGGAAGCTCTTAAATGCCCCTGATGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046524 GO:0046527

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

339

Amino Acids

38.02

Weight (kDa)

5.28

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018786)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24541 FvH4_3g42590 FvH4_4g06980 FvH4_4g06980 FvH4_4g06980 FvH4_6g21910 FvH4_6g48160
rosa_chinensis	RchiOBHm_Chr4g0414271
rosa_samantha	Rh4CG197000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	469
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	2 cut(s)	167, 338
AgsI	TTSAA	2 cut(s)	502, 806
AjnI	CCWGG	1 cut(s)	58
AleI	CACNNNNGTG	1 cut(s)	11
AluBI	AGCT	2 cut(s)	694, 991
AluI	AGCT	2 cut(s)	694, 991
Alw26I	GTCTC	2 cut(s)	537, 893
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	4 cut(s)	428, 435, 485, 694
ApoI	RAATTY	1 cut(s)	337
AspLEI	GCGC	2 cut(s)	787, 854
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	1 cut(s)	614
AvaII	GGWCC	1 cut(s)	665
BbsI	GAAGAC	3 cut(s)	106, 155, 687
BbvCI	CCTCAGC	1 cut(s)	489
BbvI	GCAGC	4 cut(s)	422, 440, 472, 681
BccI	CCATC	3 cut(s)	360, 545, 1001
BceAI	ACGGC	1 cut(s)	897
BciT130I	CCWGG	1 cut(s)	60
BciVI	GTATCC	1 cut(s)	718
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	537, 893
BfaI	CTAG	3 cut(s)	420, 581, 839
BfmI	CTRYAG	1 cut(s)	352
BfoI	RGCGCY	1 cut(s)	788
BfuI	GTATCC	1 cut(s)	718
BisI	GCNGC	4 cut(s)	429, 436, 486, 695
BlsI	GCNGC	4 cut(s)	430, 437, 487, 696
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	665
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	2 cut(s)	926, 937
BpiI	GAAGAC	3 cut(s)	106, 155, 687
BpmI	CTGGAG	1 cut(s)	801
Bpu10I	CCTNAGC	2 cut(s)	489, 638
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bse118I	RCCGGY	1 cut(s)	889
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	311
BseAI	TCCGGA	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	60
BseGI	GGATG	3 cut(s)	75, 371, 481
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	4 cut(s)	213, 480, 526, 558
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	4 cut(s)	422, 440, 472, 681
BshFI	GGCC	1 cut(s)	394
BsiSI	CCGG	3 cut(s)	470, 698, 890
BslFI	GGGAC	3 cut(s)	179, 530, 569
BsmAI	GTCTC	2 cut(s)	537, 893
BsmBI	CGTCTC	1 cut(s)	893
BsmFI	GGGAC	3 cut(s)	179, 530, 569
BsnI	GGCC	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	2 cut(s)	289, 619
BspANI	GGCC	1 cut(s)	394
BspCNI	CTCAG	4 cut(s)	214, 481, 525, 557
BspEI	TCCGGA	1 cut(s)	469
BspHI	TCATGA	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	889
BsrI	ACTGG	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	889
BssMI	GATC	2 cut(s)	289, 619
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	353, 453, 904
BstC8I	GCNNGC	2 cut(s)	433, 891
BstDEI	CTNAG	6 cut(s)	222, 489, 512, 536, 544, 638
BstEII	GGTNACC	1 cut(s)	602
BstF5I	GGATG	3 cut(s)	75, 371, 481
BstH2I	RGCGCY	1 cut(s)	788
BstHHI	GCGC	2 cut(s)	787, 854
BstKTI	GATC	2 cut(s)	292, 622
BstMAI	GTCTC	2 cut(s)	537, 893
BstMBI	GATC	2 cut(s)	289, 619
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 890, 969
BstNI	CCWGG	1 cut(s)	60
BstNSI	RCATGY	1 cut(s)	523
BstPI	GGTNACC	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	1 cut(s)	352
BstV1I	GCAGC	4 cut(s)	422, 440, 472, 681
BstV2I	GAAGAC	3 cut(s)	106, 155, 687
BsuI	GTATCC	1 cut(s)	718
BsuRI	GGCC	1 cut(s)	394
BtsCI	GGATG	3 cut(s)	75, 371, 481
BtsI	GCAGTG	3 cut(s)	167, 400, 970
BtsIMutI	CAGTG	5 cut(s)	167, 400, 458, 566, 970
Cac8I	GCNNGC	2 cut(s)	433, 891
CciI	TCATGA	1 cut(s)	286
CfoI	GCGC	2 cut(s)	787, 854
Cfr10I	RCCGGY	1 cut(s)	889
Cfr13I	GGNCC	1 cut(s)	665
CviAII	CATG	7 cut(s)	158, 287, 390, 439, 520, 608, 677
DdeI	CTNAG	6 cut(s)	222, 489, 512, 536, 544, 638
DpnI	GATC	2 cut(s)	291, 621
DpnII	GATC	2 cut(s)	289, 619
Eco32I	GATATC	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	2 cut(s)	167, 338
Eco91I	GGTNACC	1 cut(s)	602
EcoO65I	GGTNACC	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	58
EcoRV	GATATC	1 cut(s)	446
Esp3I	CGTCTC	1 cut(s)	893
FaeI	CATG	7 cut(s)	161, 290, 393, 442, 523, 611, 680
FaqI	GGGAC	3 cut(s)	179, 530, 569
FatI	CATG	7 cut(s)	157, 286, 389, 438, 519, 607, 676
FbaI	TGATCA	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	4 cut(s)	429, 436, 486, 695
FokI	GGATG	3 cut(s)	82, 378, 488
Fsp4HI	GCNGC	4 cut(s)	429, 436, 486, 695
FspBI	CTAG	3 cut(s)	420, 581, 839
GlaI	GCGC	2 cut(s)	786, 853
GluI	GCNGC	4 cut(s)	429, 436, 486, 695
GsuI	CTGGAG	1 cut(s)	801
HaeII	RGCGCY	1 cut(s)	788
HaeIII	GGCC	1 cut(s)	394
HapII	CCGG	3 cut(s)	470, 698, 890
HhaI	GCGC	2 cut(s)	787, 854
Hin1II	CATG	7 cut(s)	161, 290, 393, 442, 523, 611, 680
Hin6I	GCGC	2 cut(s)	785, 852
HinP1I	GCGC	2 cut(s)	785, 852
HincII	GTYRAC	2 cut(s)	280, 349
HindII	GTYRAC	2 cut(s)	280, 349
HinfI	GANTC	6 cut(s)	494, 506, 575, 659, 842, 928
HpaII	CCGG	3 cut(s)	470, 698, 890
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	2 cut(s)	280, 349
Hpy188I	TCNGA	3 cut(s)	245, 331, 658
Hpy188III	TCNNGA	6 cut(s)	120, 287, 470, 581, 668, 780
Hpy8I	GTNNAC	2 cut(s)	280, 349
HpyAV	CCTTC	4 cut(s)	142, 200, 220, 508
HpyCH4III	ACNGT	3 cut(s)	353, 453, 904
HpyCH4V	TGCA	4 cut(s)	438, 523, 616, 814
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 890, 969
HpyF3I	CTNAG	6 cut(s)	222, 489, 512, 536, 544, 638
Hsp92II	CATG	7 cut(s)	161, 290, 393, 442, 523, 611, 680
HspAI	GCGC	2 cut(s)	785, 852
Kpn2I	TCCGGA	1 cut(s)	469
KroI	GCCGGC	1 cut(s)	889
KroNI	GCCGGC	1 cut(s)	891
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	289, 619
LmnI	GCTCC	1 cut(s)	782
Lsp1109I	GCAGC	4 cut(s)	422, 440, 472, 681
LweI	GCATC	2 cut(s)	926, 937
MaeI	CTAG	3 cut(s)	420, 581, 839
MaeIII	GTNAC	2 cut(s)	586, 602
MalI	GATC	2 cut(s)	291, 621
MboI	GATC	2 cut(s)	289, 619
MboII	GAAGA	6 cut(s)	106, 155, 661, 692, 750, 937
MluCI	AATT	5 cut(s)	64, 300, 337, 743, 798
MlyI	GAGTC	2 cut(s)	500, 503
MmeI	TCCRAC	1 cut(s)	636
MnlI	CCTC	7 cut(s)	58, 183, 294, 466, 484, 574, 604
MroI	TCCGGA	1 cut(s)	469
MroNI	GCCGGC	1 cut(s)	889
MseI	TTAA	5 cut(s)	132, 261, 728, 825, 995
MslI	CAYNNNNRTG	1 cut(s)	11
MspI	CCGG	3 cut(s)	470, 698, 890
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	3 cut(s)	227, 890, 969
NaeI	GCCGGC	1 cut(s)	891
NdeII	GATC	2 cut(s)	289, 619
NgoMIV	GCCGGC	1 cut(s)	889
NlaIII	CATG	7 cut(s)	161, 290, 393, 442, 523, 611, 680
NmuCI	GTSAC	2 cut(s)	586, 602
NspI	RCATGY	1 cut(s)	523
OliI	CACNNNNGTG	1 cut(s)	11
PagI	TCATGA	1 cut(s)	286
PdiI	GCCGGC	1 cut(s)	891
PfeI	GAWTC	4 cut(s)	575, 659, 842, 928
PflFI	GACNNNGTC	1 cut(s)	159
PfoI	TCCNGGA	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	430, 437, 487, 696
PleI	GAGTC	2 cut(s)	500, 502
PpsI	GAGTC	2 cut(s)	500, 502
Psp6I	CCWGG	1 cut(s)	58
PspEI	GGTNACC	1 cut(s)	602
PspGI	CCWGG	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	665
PsyI	GACNNNGTC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	11
SalI	GTCGAC	1 cut(s)	278
SaqAI	TTAA	5 cut(s)	132, 261, 728, 825, 995
SatI	GCNGC	4 cut(s)	429, 436, 486, 695
Sau3AI	GATC	2 cut(s)	289, 619
Sau96I	GGNCC	1 cut(s)	665
SchI	GAGTC	2 cut(s)	500, 503
ScrFI	CCNGG	1 cut(s)	60
SetI	ASST	5 cut(s)	384, 413, 615, 696, 993
SfaNI	GCATC	2 cut(s)	926, 937
SfcI	CTRYAG	1 cut(s)	352
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	5 cut(s)	64, 300, 337, 743, 798
SspI	AATATT	1 cut(s)	822
SspMI	CTAG	3 cut(s)	420, 581, 839
StyD4I	CCNGG	1 cut(s)	58
TaaI	ACNGT	3 cut(s)	353, 453, 904
TaqI	TCGA	2 cut(s)	204, 279
TasI	AATT	5 cut(s)	64, 300, 337, 743, 798
TfiI	GAWTC	4 cut(s)	575, 659, 842, 928
Tru1I	TTAA	5 cut(s)	132, 261, 728, 825, 995
Tru9I	TTAA	5 cut(s)	132, 261, 728, 825, 995
TscAI	CASTG	5 cut(s)	174, 407, 458, 573, 970
TseFI	GTSAC	2 cut(s)	586, 602
TseI	GCWGC	4 cut(s)	428, 435, 485, 694
Tsp45I	GTSAC	2 cut(s)	586, 602
TspDTI	ATGAA	6 cut(s)	17, 86, 492, 588, 662, 693
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	5 cut(s)	174, 407, 458, 573, 970
Tth111I	GACNNNGTC	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	665
XapI	RAATTY	1 cut(s)	337
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	1 cut(s)	523
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	3 cut(s)	420, 581, 839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.