Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018786

Physical Location & Seq

Genomic Coordinates Forward (+)

42092530 .. 42093183

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG197000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCATGTTGTGAATTTCAAGAGCTTAGTAATGGTTTGCTTGTGGACCCTCATGATCAGCAATCAATTGCTAATGCACTGCTGAAGTTGTTATCGGAAAAGAATTTATGGGTTGAGTGCAGAAAGAATGGTTGGAAAAACATACACCTTTTCTCATGGCCTGAACACTGCCGAACCTACTTGACTAGAGTAGCAGCCTGCCGCATGAGACATCCACAGTGGCAGACTGACACCCCGGAGGATGAAATGGCTGCTGAAGAGTCCCTCAATGATTCTCTTAAGGACGTGCAAGATATGTCTCTTAGGCTCTCAGTTGATGGGGACAAATCCTCACTGAATGAATCTCTTCATGTGACTGCAGCTTCTGGTGACCATGAGGTGCAAGATCAAGTGAAGCGTGTCCTAAGCAAGATCAAGAAACAAGATTCTGGTCCAAAAGACCATGAAGAAGGAAATAAGCTGCCGGATAATGTAGCAAGCAAATATCCCTTGTTAAGACGTAGAAGAAAATTGATTGTCATAGCACTCGATTGCTATGACAAATCTGGAGCTCCTGAAAAGAAAATGATTCAAATTGTGCAAGAAATATTTAAGGCTGTAAGACTAGATTCTCAAAGTGCAAGATTTAGTGATTTACAGGGTTTGCTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046524 GO:0046527

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

217

Amino Acids

24.76

Weight (kDa)

6.39

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018786)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g24541 FvH4_3g42590 FvH4_4g06980 FvH4_4g06980 FvH4_4g06980 FvH4_6g21910 FvH4_6g48160
rosa_chinensis	RchiOBHm_Chr4g0414271
rosa_samantha	Rh4CG197000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	14, 103
AcuI	CTGAAG	2 cut(s)	104, 276
AflII	CTTAAG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	20, 572
AjiI	CACGTC	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	115, 147
AluBI	AGCT	4 cut(s)	25, 362, 460, 551
AluI	AGCT	4 cut(s)	25, 362, 460, 551
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	2 cut(s)	202, 303
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	4 cut(s)	194, 251, 359, 460
ApoI	RAATTY	2 cut(s)	14, 103
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	2 cut(s)	46, 431
AsuC2I	CCSGG	1 cut(s)	236
AsuHPI	GGTGA	1 cut(s)	380
AvaII	GGWCC	2 cut(s)	46, 431
BanII	GRGCYC	1 cut(s)	553
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	4 cut(s)	206, 238, 371, 447
BccI	CCATC	1 cut(s)	311
BclI	TGATCA	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	202, 303
BfaI	CTAG	2 cut(s)	186, 605
BfmI	CTRYAG	1 cut(s)	357
BfrI	CTTAAG	1 cut(s)	278
BisI	GCNGC	5 cut(s)	195, 202, 252, 360, 461
BlsI	GCNGC	5 cut(s)	196, 203, 253, 361, 462
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	2 cut(s)	46, 431
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	46, 431
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	236
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	211, 247
BseMII	CTCAG	1 cut(s)	324
BseXI	GCAGC	4 cut(s)	206, 238, 371, 447
BsgI	GTGCAG	1 cut(s)	139
BshFI	GGCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	553
BsiSI	CCGG	2 cut(s)	236, 464
BslFI	GGGAC	2 cut(s)	247, 335
BsmAI	GTCTC	2 cut(s)	202, 303
BsmFI	GGGAC	2 cut(s)	247, 335
BsnI	GGCC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	553
Bsp143I	GATC	3 cut(s)	55, 385, 411
BspACI	CCGC	1 cut(s)	202
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	323
BspHI	TCATGA	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	361
BspTI	CTTAAG	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	3 cut(s)	55, 385, 411
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	2 cut(s)	252, 351
BstAFI	CTTAAG	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	199, 478
BstDEI	CTNAG	4 cut(s)	26, 302, 310, 404
BstEII	GGTNACC	1 cut(s)	368
BstF5I	GGATG	2 cut(s)	211, 247
BstKTI	GATC	3 cut(s)	58, 388, 414
BstMAI	GTCTC	2 cut(s)	202, 303
BstMBI	GATC	3 cut(s)	55, 385, 411
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	4 cut(s)	206, 238, 371, 447
BsuRI	GGCC	1 cut(s)	160
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	211, 247
BtsI	GCAGTG	2 cut(s)	77, 166
BtsIMutI	CAGTG	4 cut(s)	77, 166, 224, 332
Cac8I	GCNNGC	2 cut(s)	199, 478
CaiI	CAGNNNCTG	1 cut(s)	365
CciI	TCATGA	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	46, 431
CviAII	CATG	7 cut(s)	6, 53, 156, 205, 350, 374, 443
CviJI	RGCY	9 cut(s)	25, 160, 197, 251, 307, 362, 460, 551, 596
CviKI_1	RGCY	9 cut(s)	25, 160, 197, 251, 307, 362, 460, 551, 596
DdeI	CTNAG	4 cut(s)	26, 302, 310, 404
DpnI	GATC	3 cut(s)	57, 387, 413
DpnII	GATC	3 cut(s)	55, 385, 411
Eam1104I	CTCTTC	2 cut(s)	252, 351
EarI	CTCTTC	2 cut(s)	252, 351
Ecl136II	GAGCTC	1 cut(s)	551
Eco24I	GRGCYC	1 cut(s)	553
Eco47I	GGWCC	2 cut(s)	46, 431
Eco53kI	GAGCTC	1 cut(s)	551
Eco57I	CTGAAG	2 cut(s)	104, 276
Eco91I	GGTNACC	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	551
EcoO65I	GGTNACC	1 cut(s)	368
EcoT38I	GRGCYC	1 cut(s)	553
FaeI	CATG	7 cut(s)	9, 56, 159, 208, 353, 377, 446
FaqI	GGGAC	2 cut(s)	247, 335
FatI	CATG	7 cut(s)	5, 52, 155, 204, 349, 373, 442
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	5 cut(s)	195, 202, 252, 360, 461
FokI	GGATG	2 cut(s)	198, 254
FriOI	GRGCYC	1 cut(s)	553
Fsp4HI	GCNGC	5 cut(s)	195, 202, 252, 360, 461
FspBI	CTAG	2 cut(s)	186, 605
GluI	GCNGC	5 cut(s)	195, 202, 252, 360, 461
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	2 cut(s)	236, 464
Hin1II	CATG	7 cut(s)	9, 56, 159, 208, 353, 377, 446
HinfI	GANTC	6 cut(s)	260, 272, 341, 425, 568, 608
HpaII	CCGG	2 cut(s)	236, 464
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	5 cut(s)	20, 53, 415, 546, 554
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	2 cut(s)	285, 499
HpyCH4V	TGCA	7 cut(s)	77, 120, 289, 359, 382, 580, 620
HpyF3I	CTNAG	4 cut(s)	26, 302, 310, 404
HpySE526I	ACGT	2 cut(s)	285, 499
Hsp92II	CATG	7 cut(s)	9, 56, 159, 208, 353, 377, 446
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	55, 385, 411
LmnI	GCTCC	2 cut(s)	548, 556
LpnPI	CCDG	9 cut(s)	174, 211, 249, 351, 414, 477, 531, 567, 623
Lsp1109I	GCAGC	4 cut(s)	206, 238, 371, 447
MaeI	CTAG	2 cut(s)	186, 605
MaeII	ACGT	2 cut(s)	285, 499
MaeIII	GTNAC	2 cut(s)	352, 368
MalI	GATC	3 cut(s)	57, 387, 413
MboI	GATC	3 cut(s)	55, 385, 411
MboII	GAAGA	4 cut(s)	269, 338, 458, 516
MfeI	CAATTG	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	553
MluCI	AATT	5 cut(s)	14, 66, 103, 509, 573
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	5 cut(s)	60, 232, 275, 340, 370
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	3 cut(s)	279, 494, 591
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	2 cut(s)	236, 464
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	66
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	3 cut(s)	55, 385, 411
NlaIII	CATG	7 cut(s)	9, 56, 159, 208, 353, 377, 446
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	352, 368
PagI	TCATGA	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	5 cut(s)	272, 341, 425, 568, 608
PkrI	GCNGC	5 cut(s)	196, 203, 253, 361, 462
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	553
PspEI	GGTNACC	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	2 cut(s)	46, 431
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	365
SacI	GAGCTC	1 cut(s)	553
SaqAI	TTAA	3 cut(s)	279, 494, 591
SatI	GCNGC	5 cut(s)	195, 202, 252, 360, 461
Sau3AI	GATC	3 cut(s)	55, 385, 411
Sau96I	GGNCC	2 cut(s)	46, 431
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	553
SetI	ASST	9 cut(s)	27, 150, 179, 288, 364, 381, 462, 502, 553
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	2 cut(s)	46, 431
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	5 cut(s)	14, 66, 103, 509, 573
SsiI	CCGC	1 cut(s)	202
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	2 cut(s)	186, 605
SstI	GAGCTC	1 cut(s)	553
StyD4I	CCNGG	1 cut(s)	234
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	2 cut(s)	288, 502
TaqI	TCGA	1 cut(s)	528
TasI	AATT	5 cut(s)	14, 66, 103, 509, 573
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	5 cut(s)	272, 341, 425, 568, 608
Tru1I	TTAA	3 cut(s)	279, 494, 591
Tru9I	TTAA	3 cut(s)	279, 494, 591
TscAI	CASTG	4 cut(s)	84, 173, 224, 339
TseFI	GTSAC	2 cut(s)	352, 368
TseI	GCWGC	4 cut(s)	194, 251, 359, 460
Tsp45I	GTSAC	2 cut(s)	352, 368
TspDTI	ATGAA	4 cut(s)	258, 338, 354, 459
TspRI	CASTG	4 cut(s)	84, 173, 224, 339
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	2 cut(s)	46, 431
XapI	RAATTY	2 cut(s)	14, 103
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	2 cut(s)	186, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.