FvH4_1g25230

Aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
17022874 .. 17031549
8676 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25230.t1

Sequence Viewer

Length: 1638 bp
ATGAAAGGCCTCTGCATTGAGCTTCTTCACAACTCCAGATTAGTGGGTATTGGAAGCACCGAAGCTTTCTCTTACCGGTTTCAGAAAAAGAACCATCAGGCCTCCTTCTCCTTCCCAAAAGTTATAGTCTCTTCGGCCTCCTTCTCTCAAAGATGTTTGGCAACTGTATCGCCTGTGGTAGTCGAGGTGGAAGAAAAGAAAACTTTCGATTCAGAGTCAGCTGGTTTGTTAGTTAAGGAGCTCCGAAAGAGTTTCAATTCGGGAAGGACAAAGAGCTACGAGTGGAGAATGTTACAGTTGAGCAATATTGCAAGGATGCTTGATGAGAAAGAGAAAGACATTGTTGAAGCTCTTTACAAGGACCTCTCAAAGCCCGAGCTTGAAACATTTATATCCGAGATTTCTACAGCAAAATCCTCGTGTAAGGAGGCATTGGAGGGATTGAAACAGTGGATGATCCCACAAAAGGTCAAAACTTCAATTGCAACATTTCCATCATCAGCAGAAATCGTGTCAGAACCTCTAGGGGTTGTGTTGGTCATCTCAACATGGAACTTTCCCTTCTTGTTATCAATTGATCCAGTTATTGGAGCTATTTCAGCCGGAAATGCGGTTGTCCTAAAACCTTCCGAAATAGCTCCAGCTACATCTTCACTCCTTGCGCAACTAGTAGAGGAGTATTTAGACAGTTCTGCTGTAAAAGTTGTAGAAGGGGCTGTCCCAGAAACGACTGCACTATTAGAGCAGAAATGGGATAAGATACTGTATACAGGTAGTGCAAGAGTAGGGCGCATTGTGATGGCTGCTGCTGCAAAACACCTTACACCTGTGATTCTAGAACTGGGTGGAAAATCCCCAGCTATAGTTGACTCAGATTTAGACTTACAGGTTGCTGTTCGGAGGATAATAGCAGGGAAGTGGGCATTGAACAATGGACAAGCTTGCATTGGCGTAGATTACATTATCACGACAAAAGACTTTGCTCCAAAGTTGATAGAAGCTCTAAAAGATGGACTGGAGCAATTTTTTGGGAAAGATCCCATGAACTCAAAAGATATATCTCGCATCGTCAGCTCGACCCAGTTTGCACGTTTGGTAAAGCTCTTGGAAGAGGACAGAGTCTCTGATAAAATTGTCCTTGGAGGTCAAACAGATGAGAAGCAATTAAAAATAGCTCCAACTATCTTGTTGGATATTCCAGAAGACACTCAGATAATGAATGAGGAGATATTTGGGCCACTAATGCCTATTGTCACTGTTGATAAGATTGAAGGCAGTTTTGATGTGATAAAATCAAGGCCAAAACCTCTTGCTGTGTACGTTTTCACGAACAATGAGCAGCTGAAGAAGAGCTTTGTTGAAAATATATCGTCAGGAGGGATGCTCATCAACGATACAGTGTTACATGTTGCCGTTGCCGGTTTACCTTTTGGAGGTGTCGGGGAGAGTGGTATGGGATCATACCATGGTAAATTCTCCTTTGATGGTTTTAGCCACAAGAAGTCAGTTATGTATAGAAGTCTCAGTGGAGATTCTACTCTGAGATATCCACCATACACACCTGAAAAGGAAAAACTATTCAAGGCTGCCCTGAGTGGTAACATATTTAGAATAATCTTGGCTTTGATCGGATGGTGA

Protein Analysis

546

Amino Acids

59.73

Weight (kDa)

6.65

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 68 - 503 5.6e-83 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 663
AccB7I CCANNNNNTGG 1 cut(s) 587
AccI GTMKAC 1 cut(s) 767
AciI CCGC 1 cut(s) 611
AclWI GGATC 4 cut(s) 451, 572, 1031, 1465
AcsI RAATTY 1 cut(s) 1472
AcuI CTGAAG 1 cut(s) 1364
AfaI GTAC 1 cut(s) 1319
AfiI CCNNNNNNNGG 3 cut(s) 466, 587, 1433
AflIII ACRYGT 1 cut(s) 1405
AgeI ACCGGT 1 cut(s) 75
AgsI TTSAA 9 cut(s) 256, 347, 383, 445, 480, 928, 1271, 1361, 1582
AhlI ACTAGT 1 cut(s) 667
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 3 cut(s) 133, 1126, 1526
AlwI GGATC 4 cut(s) 451, 572, 1031, 1465
Ama87I CYCGRG 1 cut(s) 374
AoxI GGCC 5 cut(s) 7, 99, 135, 1235, 1298
ApeKI GCWGC 5 cut(s) 803, 806, 809, 1339, 1586
ApoI RAATTY 1 cut(s) 1472
AsiGI ACCGGT 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 2 cut(s) 664, 792
AspS9I GGNCC 2 cut(s) 361, 1235
AvaI CYCGRG 1 cut(s) 374
AvaII GGWCC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 243
BauI CACGAG 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 1209
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 5 cut(s) 790, 793, 796, 1351, 1573
BccI CCATC 6 cut(s) 102, 502, 793, 1004, 1478, 1626
BceAI ACGGC 1 cut(s) 1397
BcgI CGANNNNNNTGC 4 cut(s) 150, 184, 399, 433
BcoDI GTCTC 3 cut(s) 133, 1126, 1526
BcuI ACTAGT 1 cut(s) 667
BfaI CTAG 3 cut(s) 524, 668, 836
BfmI CTRYAG 2 cut(s) 405, 861
BisI GCNGC 5 cut(s) 804, 807, 810, 1340, 1587
BlsI GCNGC 5 cut(s) 805, 808, 811, 1341, 1588
Bme18I GGWCC 1 cut(s) 361
BmeT110I CYCGRG 1 cut(s) 374
BmgT120I GGNCC 2 cut(s) 361, 1235
BmrI ACTGGG 2 cut(s) 851, 1075
BmsI GCATC 3 cut(s) 306, 1074, 1371
BmuI ACTGGG 2 cut(s) 851, 1075
BpiI GAAGAC 1 cut(s) 1209
BplI GAGNNNNNCTC 2 cut(s) 1368, 1400
BpmI CTGGAG 3 cut(s) 19, 624, 1037
BsaBI GATNNNNATC 1 cut(s) 1385
BsaJI CCNNGG 2 cut(s) 1138, 1465
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 3 cut(s) 466, 587, 1433
Bse118I RCCGGY 2 cut(s) 75, 1418
Bse1I ACTGG 4 cut(s) 581, 846, 1020, 1081
Bse8I GATNNNNATC 1 cut(s) 1385
BseDI CCNNGG 2 cut(s) 1138, 1465
BseGI GGATG 4 cut(s) 321, 459, 1386, 1637
BseJI GATNNNNATC 1 cut(s) 1385
BseLI CCNNNNNNNGG 3 cut(s) 466, 587, 1433
BseMII CTCAG 5 cut(s) 885, 1223, 1532, 1537, 1583
BseNI ACTGG 4 cut(s) 581, 846, 1020, 1081
BseRI GAGGAG 2 cut(s) 689, 1238
BseXI GCAGC 5 cut(s) 790, 793, 796, 1351, 1573
BseYI CCCAGC 1 cut(s) 856
BsgI GTGCAG 1 cut(s) 717
BshFI GGCC 5 cut(s) 9, 101, 137, 1237, 1300
BshTI ACCGGT 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 374
BsiSI CCGG 3 cut(s) 76, 603, 1419
BslFI GGGAC 1 cut(s) 704
BslI CCNNNNNNNGG 3 cut(s) 466, 587, 1433
BsmAI GTCTC 3 cut(s) 133, 1126, 1526
BsmFI GGGAC 1 cut(s) 704
BsnI GGCC 5 cut(s) 9, 101, 137, 1237, 1300
BsoBI CYCGRG 1 cut(s) 374
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 5 cut(s) 456, 577, 1036, 1457, 1626
Bsp19I CCATGG 1 cut(s) 1465
BspACI CCGC 1 cut(s) 611
BspANI GGCC 5 cut(s) 9, 101, 137, 1237, 1300
BspCNI CTCAG 5 cut(s) 884, 1222, 1533, 1536, 1584
BspPI GGATC 4 cut(s) 451, 572, 1031, 1465
BspQI GCTCTTC 1 cut(s) 1343
BsrFI RCCGGY 2 cut(s) 75, 1418
BsrI ACTGG 4 cut(s) 581, 846, 1020, 1081
BssAI RCCGGY 2 cut(s) 75, 1418
BssECI CCNNGG 2 cut(s) 1138, 1465
BssMI GATC 5 cut(s) 456, 577, 1036, 1457, 1626
BssNAI GTATAC 1 cut(s) 768
BssSI CACGAG 1 cut(s) 418
BssT1I CCWWGG 2 cut(s) 1138, 1465
Bst1107I GTATAC 1 cut(s) 768
Bst2BI CACGAG 1 cut(s) 418
Bst4CI ACNGT 7 cut(s) 166, 297, 450, 689, 765, 1258, 1399
Bst6I CTCTTC 3 cut(s) 136, 1104, 1343
BstC8I GCNNGC 1 cut(s) 943
BstDEI CTNAG 5 cut(s) 871, 1209, 1523, 1541, 1592
BstDSI CCRYGG 1 cut(s) 1465
BstENI CCTNNNNNAGG 1 cut(s) 1431
BstF5I GGATG 4 cut(s) 321, 459, 1386, 1637
BstHHI GCGC 2 cut(s) 664, 792
BstKTI GATC 5 cut(s) 459, 580, 1039, 1460, 1629
BstMAI GTCTC 3 cut(s) 133, 1126, 1526
BstMBI GATC 5 cut(s) 456, 577, 1036, 1457, 1626
BstMWI GCNNNNNNNGC 5 cut(s) 599, 608, 809, 1071, 1243
BstNSI RCATGY 1 cut(s) 1409
BstSFI CTRYAG 2 cut(s) 405, 861
BstV1I GCAGC 5 cut(s) 790, 793, 796, 1351, 1573
BstV2I GAAGAC 1 cut(s) 1209
BstX2I RGATCY 1 cut(s) 1036
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 1 cut(s) 1036
BstZ17I GTATAC 1 cut(s) 768
BsuRI GGCC 5 cut(s) 9, 101, 137, 1237, 1300
BtgI CCRYGG 1 cut(s) 1465
BtsCI GGATG 4 cut(s) 321, 459, 1386, 1637
BtsIMutI CAGTG 4 cut(s) 455, 1254, 1404, 1531
Cac8I GCNNGC 1 cut(s) 943
CfoI GCGC 2 cut(s) 664, 792
Cfr10I RCCGGY 2 cut(s) 75, 1418
Cfr13I GGNCC 2 cut(s) 361, 1235
Csp6I GTAC 1 cut(s) 1318
CspAI ACCGGT 1 cut(s) 75
CviAII CATG 4 cut(s) 549, 1042, 1406, 1466
CviQI GTAC 1 cut(s) 1318
DdeI CTNAG 5 cut(s) 871, 1209, 1523, 1541, 1592
DpnI GATC 5 cut(s) 458, 579, 1038, 1459, 1628
DpnII GATC 5 cut(s) 456, 577, 1036, 1457, 1626
Eam1104I CTCTTC 3 cut(s) 136, 1104, 1343
EarI CTCTTC 3 cut(s) 136, 1104, 1343
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 1138, 1465
Eco147I AGGCCT 2 cut(s) 9, 101
Eco24I GRGCYC 1 cut(s) 243
Eco32I GATATC 1 cut(s) 1547
Eco47I GGWCC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 1364
Eco88I CYCGRG 1 cut(s) 374
EcoICRI GAGCTC 1 cut(s) 241
EcoNI CCTNNNNNAGG 1 cut(s) 1431
EcoO109I RGGNCCY 1 cut(s) 361
EcoRV GATATC 1 cut(s) 1547
EcoT14I CCWWGG 2 cut(s) 1138, 1465
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 2 cut(s) 1138, 1465
FaeI CATG 4 cut(s) 552, 1045, 1409, 1469
FalI AAGNNNNNCTT 2 cut(s) 1337, 1369
FaqI GGGAC 1 cut(s) 704
FatI CATG 4 cut(s) 548, 1041, 1405, 1465
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 5 cut(s) 804, 807, 810, 1340, 1587
FokI GGATG 3 cut(s) 328, 466, 1393
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 5 cut(s) 804, 807, 810, 1340, 1587
FspBI CTAG 3 cut(s) 524, 668, 836
FspI TGCGCA 1 cut(s) 663
GlaI GCGC 2 cut(s) 663, 791
GluI GCNGC 5 cut(s) 804, 807, 810, 1340, 1587
GsaI CCCAGC 1 cut(s) 860
GsuI CTGGAG 3 cut(s) 19, 624, 1037
HaeIII GGCC 5 cut(s) 9, 101, 137, 1237, 1300
HapII CCGG 3 cut(s) 76, 603, 1419
HhaI GCGC 2 cut(s) 664, 792
Hin1II CATG 4 cut(s) 552, 1045, 1409, 1469
Hin6I GCGC 2 cut(s) 662, 790
HinP1I GCGC 2 cut(s) 662, 790
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HindIII AAGCTT 2 cut(s) 63, 939
HinfI GANTC 6 cut(s) 209, 215, 832, 869, 1119, 1532
HpaII CCGG 3 cut(s) 76, 603, 1419
Hpy166II GTNNAC 4 cut(s) 768, 868, 1318, 1424
Hpy188III TCNNGA 7 cut(s) 36, 261, 836, 967, 1199, 1327, 1374
Hpy8I GTNNAC 4 cut(s) 768, 868, 1318, 1424
HpyAV CCTTC 8 cut(s) 115, 121, 151, 258, 571, 636, 704, 1265
HpyCH4III ACNGT 7 cut(s) 166, 297, 450, 689, 765, 1258, 1399
HpyCH4IV ACGT 2 cut(s) 1090, 1320
HpyCH4V TGCA 8 cut(s) 15, 311, 485, 734, 779, 812, 945, 1088
HpyF10VI GCNNNNNNNGC 5 cut(s) 599, 608, 809, 1071, 1243
HpyF3I CTNAG 5 cut(s) 871, 1209, 1523, 1541, 1592
HpySE526I ACGT 2 cut(s) 1090, 1320
Hsp92II CATG 4 cut(s) 552, 1045, 1409, 1469
HspAI GCGC 2 cut(s) 662, 790
Kzo9I GATC 5 cut(s) 456, 577, 1036, 1457, 1626
LguI GCTCTTC 1 cut(s) 1343
LmnI GCTCC 7 cut(s) 238, 246, 590, 643, 988, 1018, 1180
Lsp1109I GCAGC 5 cut(s) 790, 793, 796, 1351, 1573
LweI GCATC 3 cut(s) 306, 1074, 1371
MaeI CTAG 3 cut(s) 524, 668, 836
MaeII ACGT 2 cut(s) 1090, 1320
MaeIII GTNAC 4 cut(s) 291, 1252, 1401, 1598
MalI GATC 5 cut(s) 458, 579, 1038, 1459, 1628
MboI GATC 5 cut(s) 456, 577, 1036, 1457, 1626
MboII GAAGA 8 cut(s) 17, 123, 203, 642, 1121, 1214, 1357, 1360
MfeI CAATTG 2 cut(s) 480, 573
MflI RGATCY 1 cut(s) 1036
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 7 cut(s) 256, 480, 573, 1022, 1131, 1163, 1472
MlyI GAGTC 3 cut(s) 224, 863, 1128
MmeI TCCRAC 2 cut(s) 1170, 1202
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 2 cut(s) 234, 1166
MslI CAYNNNNRTG 1 cut(s) 797
MspA1I CMGCKG 2 cut(s) 221, 1342
MspI CCGG 3 cut(s) 76, 603, 1419
MunI CAATTG 2 cut(s) 480, 573
MwoI GCNNNNNNNGC 5 cut(s) 599, 608, 809, 1071, 1243
NcoI CCATGG 1 cut(s) 1465
NdeII GATC 5 cut(s) 456, 577, 1036, 1457, 1626
NlaIII CATG 4 cut(s) 552, 1045, 1409, 1469
NmuCI GTSAC 1 cut(s) 1252
NsbI TGCGCA 1 cut(s) 663
NspI RCATGY 1 cut(s) 1409
PceI AGGCCT 2 cut(s) 9, 101
PciI ACATGT 1 cut(s) 1405
PciSI GCTCTTC 1 cut(s) 1343
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 3 cut(s) 209, 832, 1532
PflFI GACNNNGTC 1 cut(s) 1118
PflMI CCANNNNNTGG 1 cut(s) 587
PinAI ACCGGT 1 cut(s) 75
PkrI GCNGC 5 cut(s) 805, 808, 811, 1341, 1588
PleI GAGTC 3 cut(s) 223, 863, 1127
PpsI GAGTC 3 cut(s) 223, 863, 1127
PpuMI RGGWCCY 1 cut(s) 361
PscI ACATGT 1 cut(s) 1405
Psp124BI GAGCTC 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 856
PspPI GGNCC 2 cut(s) 361, 1235
PspPPI RGGWCCY 1 cut(s) 361
PsuI RGATCY 1 cut(s) 1036
PsyI GACNNNGTC 1 cut(s) 1118
PvuII CAGCTG 2 cut(s) 221, 1342
RsaI GTAC 1 cut(s) 1319
RsaNI GTAC 1 cut(s) 1318
RseI CAYNNNNRTG 1 cut(s) 797
SacI GAGCTC 1 cut(s) 243
SapI GCTCTTC 1 cut(s) 1343
SaqAI TTAA 2 cut(s) 234, 1166
SatI GCNGC 5 cut(s) 804, 807, 810, 1340, 1587
Sau3AI GATC 5 cut(s) 456, 577, 1036, 1457, 1626
Sau96I GGNCC 2 cut(s) 361, 1235
SchI GAGTC 3 cut(s) 224, 863, 1128
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 3 cut(s) 306, 1074, 1371
SfcI CTRYAG 2 cut(s) 405, 861
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 797
SpeI ACTAGT 1 cut(s) 667
Sse9I AATT 7 cut(s) 256, 480, 573, 1022, 1131, 1163, 1472
SseBI AGGCCT 2 cut(s) 9, 101
SsiI CCGC 1 cut(s) 611
SspI AATATT 1 cut(s) 307
SspMI CTAG 3 cut(s) 524, 668, 836
SstI GAGCTC 1 cut(s) 243
StuI AGGCCT 2 cut(s) 9, 101
StyI CCWWGG 2 cut(s) 1138, 1465
TaaI ACNGT 7 cut(s) 166, 297, 450, 689, 765, 1258, 1399
TaiI ACGT 2 cut(s) 1093, 1323
TaqI TCGA 3 cut(s) 183, 207, 1076
TasI AATT 7 cut(s) 256, 480, 573, 1022, 1131, 1163, 1472
TfiI GAWTC 3 cut(s) 209, 832, 1532
Tru1I TTAA 2 cut(s) 234, 1166
Tru9I TTAA 2 cut(s) 234, 1166
TscAI CASTG 4 cut(s) 455, 1261, 1404, 1531
TseFI GTSAC 1 cut(s) 1252
TseI GCWGC 5 cut(s) 803, 806, 809, 1339, 1586
Tsp45I GTSAC 1 cut(s) 1252
TspDTI ATGAA 3 cut(s) 17, 1058, 1232
TspRI CASTG 4 cut(s) 455, 1261, 1404, 1531
Tth111I GACNNNGTC 1 cut(s) 1118
Van91I CCANNNNNTGG 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 361
XagI CCTNNNNNAGG 1 cut(s) 1431
XapI RAATTY 1 cut(s) 1472
XbaI TCTAGA 1 cut(s) 835
XceI RCATGY 1 cut(s) 1409
XmiI GTMKAC 1 cut(s) 767
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 3 cut(s) 524, 668, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.