Rw0G004910

Aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00189
Physical Location & Seq
Forward (+)
25198 .. 31285
6088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G004910.1

Sequence Viewer

Length: 1584 bp
ATGAAAGGCCTCTGCATTGAGCTTCTTCACAACTCCAGATTAGTGGGTACTGGAAGCGCCAGAGCTTTCTCTTACCGGTTTCAGAGAAAGAACCATCAGGCCTTCTTGTCTTTCCCAAAACTTGTAGTCTCTTCGGCCTCCTTCTCTCAAAAATGTTTCGCAACTATGGCGCCTGTGGTAGCCGAGGTGGAAGAAAAGGAAACATTCGATTCAGAGACAGCTGGCTTGCTAGTGAAGGAGCTCCGAAAGAGTTTCAATTCGGGAAGGACAAAGAGCTATGAGTGGAGAATGTTACAGTTGAGCAATATTGCAAGGATGCTTGATGAGAAAGAGAAGGACATTATTGAAGCTCTTTACAAGGACCTCTCAAAGCCCGAGCTTGAAGCATTTATATCCGAGATTTCTACAGCAAAATCATCATGTAAGGAGGCATTGGAAGGATTGAAGCAGTGGATGGTCCCACAAAAGGTCAAAACATCAATTTCAACATATCCATCATCAGCAGAAATTGTGTCAGAGCCTCTAGGGGTTGTGTTGGTCATCTCAACATGGAACTTTCCTTTCTTGTTATCAATTGATCCAGTTATTGGAGCTATTTCAGCAGGAAATGCAGTTGTACTAAAACCTTCCGAAATAGCTCCAGCTACATCTTCGCTTCTTGTACAATTAGTAGAGGAGTATTTAGACAGTTCTGCTGTAAAAGTTGTAGAGGGGGCCATCCCAGAAACTACTGCACTATTAGAGCAGAGATGGGATAAGATACTGTATACAGGTAGTGCTAAAGTAGGGCGTATTGTGATGGCTGCTGCTGCAAAACACCTTACACCTGTGATTCTAGAACTGGGTGGAAAATCCCCAGCTGTTGTTGACTCAGATGTTGACTTACAGGTTGCTGTTAGGAGGATAATAGCAGGGAAGTGGGCATGTAACAATGGACAAGCTTGCATTGGTGTTGATTACATTATCACTACAAAAGACTTCGCTCCAAAGTTGATAGAAGCTCTAAAAAATGAACTGGAGCAATTTTTTGGGAAAGATCCCATGAACACAAGAGATATATCTCGCATTGTCAGCTCTACCCAATTTGCACGTTTGGTAAAGCTCTTGGAAGAGGACAAAGTCTCTGATAAAATTGTCCTTGGAGGTCAAACGGATGAGAACCAATTAAAAATAGCTCCAACTATCTTGTTGGATATTCCAGAAGACACTCAGATTATGAATGAGGAGATATTTGGGCCATTATTGCCTATTGTCACTGTTGAGAAGGTTGAAGGCAGTTTTGATGTGATAAACTCGAGGCCAAAACCTCTTGCTGTGTACGTTTTCACGAACAATGAGCAGCTGAAGAGAGCTTTGTGGAAAATATATCGTCAGGGGGGATGTGTCGGGGAGAGTGGAATGGGTTCATACCATGGTAAATTCTCGTTTGATGGCTTTAGCCACAAGAAGTCAGTTCTGTATAGAAGTTTCAGTGGAGATTCTACTCTGAGGTACCCACCATACACACCTGAAAAGCAAAAATTACTTAAGGCTGTCATCAGTGGCAACATATTTAGAATTATCATGGCTTTGATCGGATGGTGA

Protein Analysis

527

Amino Acids

58.27

Weight (kDa)

8.02

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 67 - 462 6.3e-75 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1491
AccB1I GGYRCC 2 cut(s) 169, 1491
AccB7I CCANNNNNTGG 1 cut(s) 587
AccI GTMKAC 1 cut(s) 767
AclWI GGATC 2 cut(s) 572, 1031
AcsI RAATTY 1 cut(s) 1418
AcuI CTGAAG 1 cut(s) 1364
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 5 cut(s) 49, 618, 663, 1319, 1493
AfiI CCNNNNNNNGG 2 cut(s) 466, 587
AflII CTTAAG 1 cut(s) 1526
AgeI ACCGGT 1 cut(s) 75
AgsI TTSAA 6 cut(s) 256, 347, 383, 445, 486, 1271
Alw21I GWGCWC 1 cut(s) 243
Alw26I GTCTC 3 cut(s) 133, 209, 1126
AlwI GGATC 2 cut(s) 572, 1031
Ama87I CYCGRG 2 cut(s) 374, 1294
AoxI GGCC 6 cut(s) 7, 99, 135, 714, 1235, 1298
ApeKI GCWGC 4 cut(s) 803, 806, 809, 1339
ApoI RAATTY 1 cut(s) 1418
AsiGI ACCGGT 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 1402
Asp718I GGTACC 1 cut(s) 1491
AspLEI GCGC 2 cut(s) 59, 172
AspS9I GGNCC 4 cut(s) 361, 457, 714, 1235
AvaI CYCGRG 2 cut(s) 374, 1294
AvaII GGWCC 2 cut(s) 361, 457
BanI GGYRCC 2 cut(s) 169, 1491
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 1209
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 4 cut(s) 790, 793, 796, 1351
BccI CCATC 8 cut(s) 102, 448, 502, 725, 744, 793, 1424, 1572
BcoDI GTCTC 3 cut(s) 133, 209, 1126
BfaI CTAG 3 cut(s) 230, 524, 836
BfmI CTRYAG 1 cut(s) 405
BfoI RGCGCY 2 cut(s) 60, 173
BfrI CTTAAG 1 cut(s) 1526
BisI GCNGC 4 cut(s) 804, 807, 810, 1340
BlsI GCNGC 4 cut(s) 805, 808, 811, 1341
Bme18I GGWCC 2 cut(s) 361, 457
BmeT110I CYCGRG 2 cut(s) 374, 1294
BmgT120I GGNCC 4 cut(s) 361, 457, 714, 1235
BmiI GGNNCC 4 cut(s) 171, 459, 715, 1493
BmrI ACTGGG 1 cut(s) 851
BmsI GCATC 1 cut(s) 306
BmuI ACTGGG 1 cut(s) 851
BpiI GAAGAC 1 cut(s) 1209
BpmI CTGGAG 3 cut(s) 19, 624, 1037
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 183, 1138, 1411
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 2 cut(s) 466, 587
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 4 cut(s) 55, 581, 846, 1020
BseDI CCNNGG 3 cut(s) 183, 1138, 1411
BseGI GGATG 6 cut(s) 321, 459, 717, 1159, 1385, 1583
BseLI CCNNNNNNNGG 2 cut(s) 466, 587
BseMII CTCAG 3 cut(s) 885, 1223, 1478
BseNI ACTGG 4 cut(s) 55, 581, 846, 1020
BseRI GAGGAG 2 cut(s) 689, 1238
BseXI GCAGC 4 cut(s) 790, 793, 796, 1351
BseYI CCCAGC 1 cut(s) 856
BsgI GTGCAG 1 cut(s) 717
BshFI GGCC 6 cut(s) 9, 101, 137, 716, 1237, 1300
BshNI GGYRCC 2 cut(s) 169, 1491
BshTI ACCGGT 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 2 cut(s) 374, 1294
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 443
BslI CCNNNNNNNGG 2 cut(s) 466, 587
BsmAI GTCTC 3 cut(s) 133, 209, 1126
BsmFI GGGAC 1 cut(s) 443
BsnI GGCC 6 cut(s) 9, 101, 137, 716, 1237, 1300
BsoBI CYCGRG 2 cut(s) 374, 1294
Bsp1286I GDGCHC 1 cut(s) 243
Bsp1407I TGTACA 1 cut(s) 661
Bsp143I GATC 3 cut(s) 577, 1036, 1572
Bsp19I CCATGG 1 cut(s) 1411
BspANI GGCC 6 cut(s) 9, 101, 137, 716, 1237, 1300
BspCNI CTCAG 3 cut(s) 884, 1222, 1479
BspLI GGNNCC 4 cut(s) 171, 459, 715, 1493
BspPI GGATC 2 cut(s) 572, 1031
BspT107I GGYRCC 2 cut(s) 169, 1491
BspTI CTTAAG 1 cut(s) 1526
BsrFI RCCGGY 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 661
BsrI ACTGG 4 cut(s) 55, 581, 846, 1020
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 3 cut(s) 183, 1138, 1411
BssMI GATC 3 cut(s) 577, 1036, 1572
BssNAI GTATAC 1 cut(s) 768
BssNI GRCGYC 1 cut(s) 170
BssT1I CCWWGG 2 cut(s) 1138, 1411
Bst1107I GTATAC 1 cut(s) 768
Bst4CI ACNGT 4 cut(s) 297, 689, 765, 1258
Bst6I CTCTTC 3 cut(s) 136, 1104, 1340
BstACI GRCGYC 1 cut(s) 170
BstAFI CTTAAG 1 cut(s) 1526
BstAPI GCANNNNNTGC 1 cut(s) 608
BstAUI TGTACA 1 cut(s) 661
BstC8I GCNNGC 3 cut(s) 223, 227, 943
BstDEI CTNAG 3 cut(s) 871, 1209, 1487
BstDSI CCRYGG 1 cut(s) 1411
BstF5I GGATG 6 cut(s) 321, 459, 717, 1159, 1385, 1583
BstH2I RGCGCY 2 cut(s) 60, 173
BstHHI GCGC 2 cut(s) 59, 172
BstKTI GATC 3 cut(s) 580, 1039, 1575
BstMAI GTCTC 3 cut(s) 133, 209, 1126
BstMBI GATC 3 cut(s) 577, 1036, 1572
BstMWI GCNNNNNNNGC 6 cut(s) 167, 599, 608, 809, 1071, 1243
BstNSI RCATGY 1 cut(s) 927
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 4 cut(s) 790, 793, 796, 1351
BstV2I GAAGAC 1 cut(s) 1209
BstX2I RGATCY 1 cut(s) 1036
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 1 cut(s) 1036
BstZ17I GTATAC 1 cut(s) 768
BsuRI GGCC 6 cut(s) 9, 101, 137, 716, 1237, 1300
BtgI CCRYGG 1 cut(s) 1411
BtsCI GGATG 6 cut(s) 321, 459, 717, 1159, 1385, 1583
BtsI GCAGTG 1 cut(s) 455
BtsIMutI CAGTG 4 cut(s) 455, 1254, 1477, 1546
Cac8I GCNNGC 3 cut(s) 223, 227, 943
CfoI GCGC 2 cut(s) 59, 172
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 4 cut(s) 361, 457, 714, 1235
Csp6I GTAC 5 cut(s) 48, 617, 662, 1318, 1492
CspAI ACCGGT 1 cut(s) 75
CviAII CATG 6 cut(s) 420, 549, 924, 1042, 1412, 1564
CviQI GTAC 5 cut(s) 48, 617, 662, 1318, 1492
DdeI CTNAG 3 cut(s) 871, 1209, 1487
DinI GGCGCC 1 cut(s) 171
DpnI GATC 3 cut(s) 579, 1038, 1574
DpnII GATC 3 cut(s) 577, 1036, 1572
Eam1104I CTCTTC 3 cut(s) 136, 1104, 1340
EarI CTCTTC 3 cut(s) 136, 1104, 1340
Ecl136II GAGCTC 1 cut(s) 241
Eco130I CCWWGG 2 cut(s) 1138, 1411
Eco147I AGGCCT 2 cut(s) 9, 101
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 361, 457
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 1364
Eco88I CYCGRG 2 cut(s) 374, 1294
EcoICRI GAGCTC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 361
EcoT14I CCWWGG 2 cut(s) 1138, 1411
EcoT38I GRGCYC 1 cut(s) 243
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
ErhI CCWWGG 2 cut(s) 1138, 1411
FaeI CATG 6 cut(s) 423, 552, 927, 1045, 1415, 1567
FaqI GGGAC 1 cut(s) 443
FatI CATG 6 cut(s) 419, 548, 923, 1041, 1411, 1563
FblI GTMKAC 1 cut(s) 767
Fnu4HI GCNGC 4 cut(s) 804, 807, 810, 1340
FokI GGATG 5 cut(s) 328, 466, 704, 1166, 1392
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 4 cut(s) 804, 807, 810, 1340
FspBI CTAG 3 cut(s) 230, 524, 836
GlaI GCGC 2 cut(s) 58, 171
GluI GCNGC 4 cut(s) 804, 807, 810, 1340
GsaI CCCAGC 1 cut(s) 860
GsuI CTGGAG 3 cut(s) 19, 624, 1037
HaeII RGCGCY 2 cut(s) 60, 173
HaeIII GGCC 6 cut(s) 9, 101, 137, 716, 1237, 1300
HapII CCGG 1 cut(s) 76
HhaI GCGC 2 cut(s) 59, 172
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 6 cut(s) 423, 552, 927, 1045, 1415, 1567
Hin6I GCGC 2 cut(s) 57, 170
HinP1I GCGC 2 cut(s) 57, 170
HincII GTYRAC 2 cut(s) 868, 880
HindII GTYRAC 2 cut(s) 868, 880
HindIII AAGCTT 1 cut(s) 939
HinfI GANTC 4 cut(s) 209, 832, 869, 1478
HpaII CCGG 1 cut(s) 76
Hpy166II GTNNAC 4 cut(s) 768, 868, 880, 1318
Hpy188III TCNNGA 5 cut(s) 36, 261, 836, 1199, 1327
Hpy8I GTNNAC 4 cut(s) 768, 868, 880, 1318
HpyAV CCTTC 9 cut(s) 112, 151, 229, 258, 328, 431, 636, 1258, 1265
HpyCH4III ACNGT 4 cut(s) 297, 689, 765, 1258
HpyCH4IV ACGT 2 cut(s) 1090, 1320
HpyCH4V TGCA 7 cut(s) 15, 311, 611, 734, 812, 945, 1088
HpyF10VI GCNNNNNNNGC 6 cut(s) 167, 599, 608, 809, 1071, 1243
HpyF3I CTNAG 3 cut(s) 871, 1209, 1487
HpySE526I ACGT 2 cut(s) 1090, 1320
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 6 cut(s) 423, 552, 927, 1045, 1415, 1567
HspAI GCGC 2 cut(s) 57, 170
KasI GGCGCC 1 cut(s) 169
KpnI GGTACC 1 cut(s) 1495
Kzo9I GATC 3 cut(s) 577, 1036, 1572
LmnI GCTCC 7 cut(s) 238, 246, 590, 643, 988, 1018, 1180
Lsp1109I GCAGC 4 cut(s) 790, 793, 796, 1351
LweI GCATC 1 cut(s) 306
MaeI CTAG 3 cut(s) 230, 524, 836
MaeII ACGT 2 cut(s) 1090, 1320
MaeIII GTNAC 3 cut(s) 291, 926, 1252
MalI GATC 3 cut(s) 579, 1038, 1574
MboI GATC 3 cut(s) 577, 1036, 1572
MboII GAAGA 7 cut(s) 17, 123, 203, 642, 1121, 1214, 1357
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 1036
MhlI GDGCHC 1 cut(s) 243
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 1 cut(s) 863
MmeI TCCRAC 2 cut(s) 1170, 1202
MroXI GAANNNNTTC 1 cut(s) 1402
MseI TTAA 2 cut(s) 1166, 1527
MspA1I CMGCKG 3 cut(s) 221, 860, 1342
MspCI CTTAAG 1 cut(s) 1526
MspI CCGG 1 cut(s) 76
MunI CAATTG 1 cut(s) 573
MwoI GCNNNNNNNGC 6 cut(s) 167, 599, 608, 809, 1071, 1243
NarI GGCGCC 1 cut(s) 170
NcoI CCATGG 1 cut(s) 1411
NdeII GATC 3 cut(s) 577, 1036, 1572
NlaIII CATG 6 cut(s) 423, 552, 927, 1045, 1415, 1567
NlaIV GGNNCC 4 cut(s) 171, 459, 715, 1493
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 1252
NspI RCATGY 1 cut(s) 927
PaeR7I CTCGAG 1 cut(s) 1294
PceI AGGCCT 2 cut(s) 9, 101
PdmI GAANNNNTTC 1 cut(s) 1402
PfeI GAWTC 3 cut(s) 209, 832, 1478
PflFI GACNNNGTC 1 cut(s) 1118
PflMI CCANNNNNTGG 1 cut(s) 587
PinAI ACCGGT 1 cut(s) 75
PkrI GCNGC 4 cut(s) 805, 808, 811, 1341
PleI GAGTC 1 cut(s) 863
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 863
PpuMI RGGWCCY 1 cut(s) 361
Psp124BI GAGCTC 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 361
PspFI CCCAGC 1 cut(s) 856
PspN4I GGNNCC 4 cut(s) 171, 459, 715, 1493
PspPI GGNCC 4 cut(s) 361, 457, 714, 1235
PspPPI RGGWCCY 1 cut(s) 361
PspXI VCTCGAGB 1 cut(s) 1294
PsuI RGATCY 1 cut(s) 1036
PsyI GACNNNGTC 1 cut(s) 1118
PvuII CAGCTG 3 cut(s) 221, 860, 1342
RsaI GTAC 5 cut(s) 49, 618, 663, 1319, 1493
RsaNI GTAC 5 cut(s) 48, 617, 662, 1318, 1492
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 2 cut(s) 1166, 1527
SatI GCNGC 4 cut(s) 804, 807, 810, 1340
Sau3AI GATC 3 cut(s) 577, 1036, 1572
Sau96I GGNCC 4 cut(s) 361, 457, 714, 1235
SchI GAGTC 1 cut(s) 863
SduI GDGCHC 1 cut(s) 243
SfaNI GCATC 1 cut(s) 306
SfcI CTRYAG 1 cut(s) 405
SfoI GGCGCC 1 cut(s) 171
Sfr274I CTCGAG 1 cut(s) 1294
SinI GGWCC 2 cut(s) 361, 457
SlaI CTCGAG 1 cut(s) 1294
SmlI CTYRAG 2 cut(s) 1294, 1526
SmoI CTYRAG 2 cut(s) 1294, 1526
SseBI AGGCCT 2 cut(s) 9, 101
SspDI GGCGCC 1 cut(s) 169
SspI AATATT 1 cut(s) 307
SspMI CTAG 3 cut(s) 230, 524, 836
SstI GAGCTC 1 cut(s) 243
StuI AGGCCT 2 cut(s) 9, 101
StyI CCWWGG 2 cut(s) 1138, 1411
TaaI ACNGT 4 cut(s) 297, 689, 765, 1258
TaiI ACGT 2 cut(s) 1093, 1323
TaqI TCGA 2 cut(s) 207, 1295
TatI WGTACW 2 cut(s) 616, 661
TfiI GAWTC 3 cut(s) 209, 832, 1478
Tru1I TTAA 2 cut(s) 1166, 1527
Tru9I TTAA 2 cut(s) 1166, 1527
TscAI CASTG 4 cut(s) 455, 1261, 1477, 1546
TseFI GTSAC 1 cut(s) 1252
TseI GCWGC 4 cut(s) 803, 806, 809, 1339
Tsp45I GTSAC 1 cut(s) 1252
TspDTI ATGAA 5 cut(s) 17, 1026, 1058, 1232, 1395
TspGWI ACGGA 1 cut(s) 1166
TspRI CASTG 4 cut(s) 455, 1261, 1477, 1546
Tth111I GACNNNGTC 1 cut(s) 1118
Van91I CCANNNNNTGG 1 cut(s) 587
Vha464I CTTAAG 1 cut(s) 1526
VpaK11BI GGWCC 2 cut(s) 361, 457
XapI RAATTY 1 cut(s) 1418
XbaI TCTAGA 1 cut(s) 835
XceI RCATGY 1 cut(s) 927
XhoI CTCGAG 1 cut(s) 1294
XmiI GTMKAC 1 cut(s) 767
XmnI GAANNNNTTC 1 cut(s) 1402
XspI CTAG 3 cut(s) 230, 524, 836
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.