Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005241

Physical Location & Seq

Genomic Coordinates Reverse (-)

37956123 .. 37962717

Gene Structure 6595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG302900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGTTACAGTTGAGCAATATTGCAAGGATGCTTGATGAGAAAGAGAAGGACATTATTGAAGCTCTTTACAAGGACCTCTCAAAGCCCGAGCTTGAAGCATTTATATCCGAGATTTCTACAGCAAAATCATCATGTAAGGAGGCATTGGAAGGATTGAAGCGGTGGATGGTCCCACAAAAGGTCAAAACTTCAATTTCAACATATCCATCATCAGCAGAAATTGTGTCAGAGCCTCTAGGGGTTGTGTTGGTCATCTCAACATGGAACTTTCCTTTCTTGTTATCAATTGATCCAATTATTGGAGCTATTTCAGCAGGAAATGCAGTTGTACTAAAACCTTCCGAAATAGCTCCAGCTACATCTTCACTTCTTGTACAATTAGTAGAGGAGTATTTAGACAGTTCTGCTGTAAAAGTTGTAGAGGGGGCCATCCCAGAAACTACTGCACTATTAGAGCAGAGATGGGATAAGATACTGTATACAGGTAGTGCTAAAGTAGGGCGTATTGTGATGGCTGCTGCTGCAAAACACCTTACACCTGTGATTCTAGAACTGGGTGGAAAATCCCCAGCTGTTGTTGACTCAGATGTTGACTTACAGGTTGCTGTTAGGAGGATAATAGCAGGGAAGTGGGCATGTAACAATGGACAAGCTTGCATTGGTGTTGATTACATTATCACTACAAAAGACTTCGCTCCAAAGTTGATAGAAGCTCTAAAAAATGAACTGGAGCAATTTTTTGGGAAAGATCCCATGAACTCAAGAGATATATCTCGCATTGTCAGCTCTACCCAATTTGCACGTTTGGTAAAGCTCTTGGAAGAGGACAAAGTCTCTGATAAAATTGTCCTTGGAGGTCAAACGGATGAGAACCAATTAAAAATAGCTCCAACTATCTTGTTGGATATTCCAGAAGACACTCAGATTATGAATGAGGAGATATTTGGGCCATTATTGCCTATTGTCACTGTTGAGAAGATTGAAGGCAGTTTTGATGTGATAAACTCGAGGCCAAAACCTCTTGCTGTGTACGTTTTCACGAACAATGAGCAGCTGAAGAAGAGCTTTGTGGAAAATATATCGTCAGGGGGGATGCTCATCAACGATACAGTCCTACATGTTGCTGTTGCCGGTTTACCTTTCGGAGGTGTCGGGGAGAGTGGAATGGGTTCATACCATGGTAAATTCTCGTTTGATGGCTTTAGCCACAAGAAGTCAGTTCTGTATAGAAGTTTCAGTGGAGATTCTACTCTGAGGTACCCACCATACACACCTGAAAAGCAAAAATTACTTAAGGCTGTCATCAGTGGCAACATATTTAGAATTATCATGGCTTTGATCGGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0010033 GO:0010035 GO:0016491 GO:0016620 GO:0016903 GO:0031967 GO:0031975 GO:0033721 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

449

Amino Acids

49.05

Weight (kDa)

5.43

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	4 - 407	4.6e-85	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34240 AT4G34240 AT4G34240 AT4G34240
fragaria_vesca	FvH4_1g25230 FvH4_1g25230 FvH4_1g25230 FvH4_1g25230 FvH4_1g25230
malus_domestica	MD15G1136900.v1.1 MD15G1137200.v1.1
prunus_persica	Prupe.4G279800_v2.0.a1 Prupe.4G279800_v2.0.a1 Prupe.4G279800_v2.0.a1 Prupe.4G279800_v2.0.a1 Prupe.4G279800_v2.0.a1
pyrus_communis	pycom15g12370
rosa_chinensis	RchiOBHm_Chr2g0123141
rosa_laevigata	RLG00000018731
rosa_multiflora	Rmu_sc0005573.1_g000005
rosa_roxburghii	Rroxscaffold_2G00120890
rosa_rugosa	Rorug02G0243200 Rorug02G0243300
rosa_samantha	Rh2AG302900 Rh2BG310700 Rh2CG289100 Rh2DG326900
rosa_wichuraiana	Rw0G004910 Rw2G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1257
AccB1I	GGYRCC	1 cut(s)	1257
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	479
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	2 cut(s)	284, 743
AcsI	RAATTY	1 cut(s)	1184
AcuI	CTGAAG	1 cut(s)	1076
AfaI	GTAC	4 cut(s)	330, 375, 1031, 1259
AfiI	CCNNNNNNNGG	3 cut(s)	178, 299, 1145
AflII	CTTAAG	1 cut(s)	1292
AflIII	ACRYGT	1 cut(s)	1117
AgsI	TTSAA	6 cut(s)	59, 95, 157, 192, 198, 983
Alw26I	GTCTC	1 cut(s)	838
AlwI	GGATC	2 cut(s)	284, 743
Ama87I	CYCGRG	2 cut(s)	86, 1006
AoxI	GGCC	3 cut(s)	426, 947, 1010
ApeKI	GCWGC	4 cut(s)	515, 518, 521, 1051
ApoI	RAATTY	1 cut(s)	1184
Asp700I	GAANNNNTTC	1 cut(s)	1168
Asp718I	GGTACC	1 cut(s)	1257
AspS9I	GGNCC	4 cut(s)	73, 169, 426, 947
AvaI	CYCGRG	2 cut(s)	86, 1006
AvaII	GGWCC	2 cut(s)	73, 169
BanI	GGYRCC	1 cut(s)	1257
BbsI	GAAGAC	1 cut(s)	921
BbvI	GCAGC	4 cut(s)	502, 505, 508, 1063
BccI	CCATC	7 cut(s)	160, 214, 437, 456, 505, 1190, 1338
BcoDI	GTCTC	1 cut(s)	838
BfaI	CTAG	2 cut(s)	236, 548
BfmI	CTRYAG	1 cut(s)	117
BfrI	CTTAAG	1 cut(s)	1292
BisI	GCNGC	4 cut(s)	516, 519, 522, 1052
BlsI	GCNGC	4 cut(s)	517, 520, 523, 1053
Bme18I	GGWCC	2 cut(s)	73, 169
BmeT110I	CYCGRG	2 cut(s)	86, 1006
BmgT120I	GGNCC	4 cut(s)	73, 169, 426, 947
BmiI	GGNNCC	3 cut(s)	171, 427, 1259
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	2 cut(s)	18, 1083
BmuI	ACTGGG	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	921
BpmI	CTGGAG	2 cut(s)	336, 749
BpuEI	CTTGAG	1 cut(s)	745
BsaBI	GATNNNNATC	1 cut(s)	1097
BsaJI	CCNNGG	2 cut(s)	850, 1177
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 299, 1145
Bse118I	RCCGGY	1 cut(s)	1130
Bse1I	ACTGG	2 cut(s)	558, 732
Bse8I	GATNNNNATC	1 cut(s)	1097
BseDI	CCNNGG	2 cut(s)	850, 1177
BseGI	GGATG	6 cut(s)	33, 171, 429, 871, 1098, 1349
BseJI	GATNNNNATC	1 cut(s)	1097
BseLI	CCNNNNNNNGG	3 cut(s)	178, 299, 1145
BseMII	CTCAG	3 cut(s)	597, 935, 1244
BseNI	ACTGG	2 cut(s)	558, 732
BseRI	GAGGAG	2 cut(s)	401, 950
BseXI	GCAGC	4 cut(s)	502, 505, 508, 1063
BseYI	CCCAGC	1 cut(s)	568
BsgI	GTGCAG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	428, 949, 1012
BshNI	GGYRCC	1 cut(s)	1257
BsiHKCI	CYCGRG	2 cut(s)	86, 1006
BsiSI	CCGG	1 cut(s)	1131
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	3 cut(s)	178, 299, 1145
BsmAI	GTCTC	1 cut(s)	838
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	428, 949, 1012
BsoBI	CYCGRG	2 cut(s)	86, 1006
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	289, 748, 1338
Bsp19I	CCATGG	1 cut(s)	1177
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	3 cut(s)	428, 949, 1012
BspCNI	CTCAG	3 cut(s)	596, 934, 1245
BspLI	GGNNCC	3 cut(s)	171, 427, 1259
BspPI	GGATC	2 cut(s)	284, 743
BspQI	GCTCTTC	1 cut(s)	1055
BspT107I	GGYRCC	1 cut(s)	1257
BspTI	CTTAAG	1 cut(s)	1292
BsrFI	RCCGGY	1 cut(s)	1130
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	558, 732
BssAI	RCCGGY	1 cut(s)	1130
BssECI	CCNNGG	2 cut(s)	850, 1177
BssMI	GATC	3 cut(s)	289, 748, 1338
BssNAI	GTATAC	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	850, 1177
Bst1107I	GTATAC	1 cut(s)	480
Bst4CI	ACNGT	5 cut(s)	9, 401, 477, 970, 1111
Bst6I	CTCTTC	2 cut(s)	816, 1055
BstAFI	CTTAAG	1 cut(s)	1292
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstAUI	TGTACA	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	655
BstDEI	CTNAG	3 cut(s)	583, 921, 1253
BstDSI	CCRYGG	1 cut(s)	1177
BstENI	CCTNNNNNAGG	1 cut(s)	1143
BstF5I	GGATG	6 cut(s)	33, 171, 429, 871, 1098, 1349
BstKTI	GATC	3 cut(s)	292, 751, 1341
BstMAI	GTCTC	1 cut(s)	838
BstMBI	GATC	3 cut(s)	289, 748, 1338
BstMWI	GCNNNNNNNGC	5 cut(s)	311, 320, 521, 783, 955
BstNSI	RCATGY	2 cut(s)	639, 1121
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	4 cut(s)	502, 505, 508, 1063
BstV2I	GAAGAC	1 cut(s)	921
BstX2I	RGATCY	1 cut(s)	748
BstYI	RGATCY	1 cut(s)	748
BstZ17I	GTATAC	1 cut(s)	480
BsuRI	GGCC	3 cut(s)	428, 949, 1012
BtgI	CCRYGG	1 cut(s)	1177
BtsCI	GGATG	6 cut(s)	33, 171, 429, 871, 1098, 1349
BtsIMutI	CAGTG	3 cut(s)	966, 1243, 1312
Cac8I	GCNNGC	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	1130
Cfr13I	GGNCC	4 cut(s)	73, 169, 426, 947
Csp6I	GTAC	4 cut(s)	329, 374, 1030, 1258
CviAII	CATG	7 cut(s)	132, 261, 636, 754, 1118, 1178, 1330
CviQI	GTAC	4 cut(s)	329, 374, 1030, 1258
DdeI	CTNAG	3 cut(s)	583, 921, 1253
DpnI	GATC	3 cut(s)	291, 750, 1340
DpnII	GATC	3 cut(s)	289, 748, 1338
Eam1104I	CTCTTC	2 cut(s)	816, 1055
EarI	CTCTTC	2 cut(s)	816, 1055
Eco130I	CCWWGG	2 cut(s)	850, 1177
Eco47I	GGWCC	2 cut(s)	73, 169
Eco57I	CTGAAG	1 cut(s)	1076
Eco88I	CYCGRG	2 cut(s)	86, 1006
EcoNI	CCTNNNNNAGG	1 cut(s)	1143
EcoO109I	RGGNCCY	1 cut(s)	73
EcoT14I	CCWWGG	2 cut(s)	850, 1177
ErhI	CCWWGG	2 cut(s)	850, 1177
FaeI	CATG	7 cut(s)	135, 264, 639, 757, 1121, 1181, 1333
FalI	AAGNNNNNCTT	2 cut(s)	1049, 1081
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	7 cut(s)	131, 260, 635, 753, 1117, 1177, 1329
FblI	GTMKAC	1 cut(s)	479
Fnu4HI	GCNGC	4 cut(s)	516, 519, 522, 1052
FokI	GGATG	5 cut(s)	40, 178, 416, 878, 1105
Fsp4HI	GCNGC	4 cut(s)	516, 519, 522, 1052
FspBI	CTAG	2 cut(s)	236, 548
GluI	GCNGC	4 cut(s)	516, 519, 522, 1052
GsaI	CCCAGC	1 cut(s)	572
GsuI	CTGGAG	2 cut(s)	336, 749
HaeIII	GGCC	3 cut(s)	428, 949, 1012
HapII	CCGG	1 cut(s)	1131
Hin1II	CATG	7 cut(s)	135, 264, 639, 757, 1121, 1181, 1333
HincII	GTYRAC	2 cut(s)	580, 592
HindII	GTYRAC	2 cut(s)	580, 592
HindIII	AAGCTT	1 cut(s)	651
HinfI	GANTC	3 cut(s)	544, 581, 1244
HpaII	CCGG	1 cut(s)	1131
Hpy166II	GTNNAC	5 cut(s)	480, 580, 592, 1030, 1136
Hpy188I	TCNGA	9 cut(s)	109, 229, 343, 586, 838, 924, 1145, 1254, 1343
Hpy188III	TCNNGA	4 cut(s)	548, 762, 911, 1039
Hpy8I	GTNNAC	5 cut(s)	480, 580, 592, 1030, 1136
HpyAV	CCTTC	4 cut(s)	40, 143, 348, 977
HpyCH4III	ACNGT	5 cut(s)	9, 401, 477, 970, 1111
HpyCH4IV	ACGT	2 cut(s)	802, 1032
HpyCH4V	TGCA	6 cut(s)	23, 323, 446, 524, 657, 800
HpyF10VI	GCNNNNNNNGC	5 cut(s)	311, 320, 521, 783, 955
HpyF3I	CTNAG	3 cut(s)	583, 921, 1253
HpySE526I	ACGT	2 cut(s)	802, 1032
Hsp92II	CATG	7 cut(s)	135, 264, 639, 757, 1121, 1181, 1333
KpnI	GGTACC	1 cut(s)	1261
Kzo9I	GATC	3 cut(s)	289, 748, 1338
LguI	GCTCTTC	1 cut(s)	1055
LmnI	GCTCC	5 cut(s)	302, 355, 700, 730, 892
Lsp1109I	GCAGC	4 cut(s)	502, 505, 508, 1063
LweI	GCATC	2 cut(s)	18, 1083
MaeI	CTAG	2 cut(s)	236, 548
MaeII	ACGT	2 cut(s)	802, 1032
MaeIII	GTNAC	3 cut(s)	3, 638, 964
MalI	GATC	3 cut(s)	291, 750, 1340
MboI	GATC	3 cut(s)	289, 748, 1338
MboII	GAAGA	6 cut(s)	354, 833, 926, 988, 1069, 1072
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	748
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	2 cut(s)	882, 914
MroXI	GAANNNNTTC	1 cut(s)	1168
MseI	TTAA	2 cut(s)	878, 1293
MspA1I	CMGCKG	2 cut(s)	572, 1054
MspCI	CTTAAG	1 cut(s)	1292
MspI	CCGG	1 cut(s)	1131
MunI	CAATTG	1 cut(s)	285
MwoI	GCNNNNNNNGC	5 cut(s)	311, 320, 521, 783, 955
NcoI	CCATGG	1 cut(s)	1177
NdeII	GATC	3 cut(s)	289, 748, 1338
NlaIII	CATG	7 cut(s)	135, 264, 639, 757, 1121, 1181, 1333
NlaIV	GGNNCC	3 cut(s)	171, 427, 1259
NmuCI	GTSAC	1 cut(s)	964
NspI	RCATGY	2 cut(s)	639, 1121
PaeR7I	CTCGAG	1 cut(s)	1006
PciI	ACATGT	1 cut(s)	1117
PciSI	GCTCTTC	1 cut(s)	1055
PdmI	GAANNNNTTC	1 cut(s)	1168
PfeI	GAWTC	2 cut(s)	544, 1244
PflFI	GACNNNGTC	1 cut(s)	830
PflMI	CCANNNNNTGG	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	517, 520, 523, 1053
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
PpuMI	RGGWCCY	1 cut(s)	73
PscI	ACATGT	1 cut(s)	1117
Psp5II	RGGWCCY	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	568
PspN4I	GGNNCC	3 cut(s)	171, 427, 1259
PspPI	GGNCC	4 cut(s)	73, 169, 426, 947
PspPPI	RGGWCCY	1 cut(s)	73
PspXI	VCTCGAGB	1 cut(s)	1006
PsuI	RGATCY	1 cut(s)	748
PsyI	GACNNNGTC	1 cut(s)	830
PvuII	CAGCTG	2 cut(s)	572, 1054
RsaI	GTAC	4 cut(s)	330, 375, 1031, 1259
RsaNI	GTAC	4 cut(s)	329, 374, 1030, 1258
SapI	GCTCTTC	1 cut(s)	1055
SaqAI	TTAA	2 cut(s)	878, 1293
SatI	GCNGC	4 cut(s)	516, 519, 522, 1052
Sau3AI	GATC	3 cut(s)	289, 748, 1338
Sau96I	GGNCC	4 cut(s)	73, 169, 426, 947
SchI	GAGTC	1 cut(s)	575
SfaNI	GCATC	2 cut(s)	18, 1083
SfcI	CTRYAG	1 cut(s)	117
Sfr274I	CTCGAG	1 cut(s)	1006
SinI	GGWCC	2 cut(s)	73, 169
SlaI	CTCGAG	1 cut(s)	1006
SmlI	CTYRAG	3 cut(s)	760, 1006, 1292
SmoI	CTYRAG	3 cut(s)	760, 1006, 1292
SsiI	CCGC	1 cut(s)	160
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	2 cut(s)	236, 548
StyI	CCWWGG	2 cut(s)	850, 1177
TaaI	ACNGT	5 cut(s)	9, 401, 477, 970, 1111
TaiI	ACGT	2 cut(s)	805, 1035
TaqI	TCGA	1 cut(s)	1007
TatI	WGTACW	2 cut(s)	328, 373
TfiI	GAWTC	2 cut(s)	544, 1244
Tru1I	TTAA	2 cut(s)	878, 1293
Tru9I	TTAA	2 cut(s)	878, 1293
TscAI	CASTG	3 cut(s)	973, 1243, 1312
TseFI	GTSAC	1 cut(s)	964
TseI	GCWGC	4 cut(s)	515, 518, 521, 1051
Tsp45I	GTSAC	1 cut(s)	964
TspDTI	ATGAA	4 cut(s)	738, 770, 944, 1161
TspGWI	ACGGA	1 cut(s)	878
TspRI	CASTG	3 cut(s)	973, 1243, 1312
Tth111I	GACNNNGTC	1 cut(s)	830
Van91I	CCANNNNNTGG	1 cut(s)	299
Vha464I	CTTAAG	1 cut(s)	1292
VpaK11BI	GGWCC	2 cut(s)	73, 169
XagI	CCTNNNNNAGG	1 cut(s)	1143
XapI	RAATTY	1 cut(s)	1184
XbaI	TCTAGA	1 cut(s)	547
XceI	RCATGY	2 cut(s)	639, 1121
XhoI	CTCGAG	1 cut(s)	1006
XmiI	GTMKAC	1 cut(s)	479
XmnI	GAANNNNTTC	1 cut(s)	1168
XspI	CTAG	2 cut(s)	236, 548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.