Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005241

Physical Location & Seq

Genomic Coordinates Reverse (-)

32598137 .. 32606656

Gene Structure 8520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG289100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCGCCTGTGGTAGCCGAGGTGGAAGAAAAGGAAACATTCGATTCAAAGACAGCTGGCTTGCTAGTGAAGGAGCTCCGAAAGAGTTTCAATTCGGGAAGGACAAAGAGCTATGAGTGGAGAATGTTACAGTTGAGCAATATTGCAAGGATGCTTGATGAGAAAGAGAAGGACATTATTGAAGCTCTTTACAAGGACCTCTCAAAGCCCGAGCTTGAAGCATTTATATCCGAGATTTCTACAGCAAAATCATCATGTAAGGAGGCATTGGAAGGATTGAAGCAGTGGATGGTCCCACAAAAGGTCAAAACTTCAATTTCAACATATCCATCATCAGCAGAAATTGTGTCAGAGCCTCTAGGGGTTGTGTTGGTCATCTCAACATGGAACTTTCCTTTCTTGTTATCAATTGATCCAATTATTGGAGCTATTTCAGCAGGAAATGCAGTTGTACTAAAACCTTCCGAAATAGCTCCAGCTACATCTTCACTTCTTGTACAATTAGTAGAGGAGTATTTAGACAGTTCTGCTGTAAAAGTTGTAGAGGGGGCCATCCCAGAAACTACTGCACTATTAGAGCAGAGATGGGATAAGATACTGTATACAGGTAGTGCTAAAGTAGGGCGTATTGTGATGGCTGCTGCTGCAAAACACCTTACACCTGTGATTCTAGAACTGGGTGGAAAATCCCCAGCTGTTGTTGACTCAGATGTTGACTTACAGGTTGCTGTTAGGAGGATAATAGCAGGGAAGTGGGCATGTAACAATGGACAAGCTTGCATTGGTGTTGATTACATTATCACTACAAAAGACTTCGCTCCAAAGTTGATAGAAGCTCTAAAAAATGAACTGGAGCAATTTTTTGGGAAAGATCCCATGAAGTCAAGAGATATATCTCGCATTGTCAGCTCTACCCAATTTGCACGTTTGGTAAAGCTCTTGGAAGAGGACAAAGTCTCTGATAAAATTGTCCTTGGAGGTCAAACGGATGAGAACCAATTAAAAATAGCTCCAACTATCTTGTTGGATATTCCAGAAGACACTCAGATTATGAATGAGGAGATATTTGGGCCATTATTGCCTATTGTCACTGTGAGTACTCAGATACATTTTTACTTAATATATTTGGCCAAGGATTGCATTTTTTTCTGGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009941 GO:0010033 GO:0010035 GO:0016491 GO:0016620 GO:0016903 GO:0031967 GO:0031975 GO:0033721 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

385

Amino Acids

42.46

Weight (kDa)

5.05

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	17 - 368	2.1e-70	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34240 AT4G34240 AT4G34240 AT4G34240
fragaria_vesca	FvH4_1g25230 FvH4_1g25230 FvH4_1g25230 FvH4_1g25230 FvH4_1g25230
malus_domestica	MD15G1136900.v1.1 MD15G1137200.v1.1
prunus_persica	Prupe.4G279800_v2.0.a1 Prupe.4G279800_v2.0.a1 Prupe.4G279800_v2.0.a1 Prupe.4G279800_v2.0.a1 Prupe.4G279800_v2.0.a1
pyrus_communis	pycom15g12370
rosa_chinensis	RchiOBHm_Chr2g0123141
rosa_laevigata	RLG00000018731
rosa_multiflora	Rmu_sc0005573.1_g000005
rosa_roxburghii	Rroxscaffold_2G00120890
rosa_rugosa	Rorug02G0243200 Rorug02G0243300
rosa_samantha	Rh2AG302900 Rh2BG310700 Rh2CG289100 Rh2DG326900
rosa_wichuraiana	Rw0G004910 Rw2G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	602
AclWI	GGATC	2 cut(s)	407, 866
AcoI	YGGCCR	1 cut(s)	1128
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	453, 498, 1099
AfiI	CCNNNNNNNGG	2 cut(s)	301, 422
AgsI	TTSAA	7 cut(s)	48, 91, 182, 218, 280, 315, 321
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	961
AlwI	GGATC	2 cut(s)	407, 866
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	3 cut(s)	549, 1070, 1128
ApeKI	GCWGC	3 cut(s)	638, 641, 644
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	4 cut(s)	196, 292, 549, 1070
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	2 cut(s)	196, 292
BalI	TGGCCA	1 cut(s)	1130
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	1044
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	3 cut(s)	625, 628, 631
BccI	CCATC	5 cut(s)	283, 337, 560, 579, 628
BcoDI	GTCTC	1 cut(s)	961
BfaI	CTAG	4 cut(s)	65, 359, 671, 1156
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	3 cut(s)	639, 642, 645
BlsI	GCNGC	3 cut(s)	640, 643, 646
BmcAI	AGTACT	1 cut(s)	1099
Bme18I	GGWCC	2 cut(s)	196, 292
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	4 cut(s)	196, 292, 549, 1070
BmiI	GGNNCC	3 cut(s)	6, 294, 550
BmrI	ACTGGG	1 cut(s)	686
BmsI	GCATC	1 cut(s)	141
BmuI	ACTGGG	1 cut(s)	686
BpiI	GAAGAC	1 cut(s)	1044
BpmI	CTGGAG	2 cut(s)	459, 872
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	18, 973, 1131
Bsc4I	CCNNNNNNNGG	2 cut(s)	301, 422
Bse1I	ACTGG	2 cut(s)	681, 855
BseDI	CCNNGG	3 cut(s)	18, 973, 1131
BseGI	GGATG	4 cut(s)	156, 294, 552, 994
BseLI	CCNNNNNNNGG	2 cut(s)	301, 422
BseMII	CTCAG	3 cut(s)	720, 1058, 1115
BseNI	ACTGG	2 cut(s)	681, 855
BseRI	GAGGAG	2 cut(s)	524, 1073
BseXI	GCAGC	3 cut(s)	625, 628, 631
BseYI	CCCAGC	1 cut(s)	691
BsgI	GTGCAG	1 cut(s)	552
BshFI	GGCC	3 cut(s)	551, 1072, 1130
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	78
BsiHKCI	CYCGRG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	2 cut(s)	301, 422
BsmAI	GTCTC	1 cut(s)	961
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	551, 1072, 1130
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp1407I	TGTACA	1 cut(s)	496
Bsp143I	GATC	2 cut(s)	412, 871
BspANI	GGCC	3 cut(s)	551, 1072, 1130
BspCNI	CTCAG	3 cut(s)	719, 1057, 1114
BspLI	GGNNCC	3 cut(s)	6, 294, 550
BspPI	GGATC	2 cut(s)	407, 866
BspT107I	GGYRCC	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	681, 855
BssECI	CCNNGG	3 cut(s)	18, 973, 1131
BssMI	GATC	2 cut(s)	412, 871
BssNAI	GTATAC	1 cut(s)	603
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	973, 1131
Bst1107I	GTATAC	1 cut(s)	603
Bst4CI	ACNGT	4 cut(s)	132, 524, 600, 1093
Bst6I	CTCTTC	1 cut(s)	939
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	496
BstC8I	GCNNGC	3 cut(s)	58, 62, 778
BstDEI	CTNAG	3 cut(s)	706, 1044, 1101
BstF5I	GGATG	4 cut(s)	156, 294, 552, 994
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	2 cut(s)	415, 874
BstMAI	GTCTC	1 cut(s)	961
BstMBI	GATC	2 cut(s)	412, 871
BstMWI	GCNNNNNNNGC	5 cut(s)	434, 443, 644, 906, 1078
BstNSI	RCATGY	1 cut(s)	762
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	625, 628, 631
BstV2I	GAAGAC	1 cut(s)	1044
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
BstZ17I	GTATAC	1 cut(s)	603
BsuRI	GGCC	3 cut(s)	551, 1072, 1130
BtsCI	GGATG	4 cut(s)	156, 294, 552, 994
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	2 cut(s)	290, 1089
Cac8I	GCNNGC	3 cut(s)	58, 62, 778
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	4 cut(s)	196, 292, 549, 1070
Csp6I	GTAC	3 cut(s)	452, 497, 1098
CviAII	CATG	4 cut(s)	255, 384, 759, 877
CviQI	GTAC	3 cut(s)	452, 497, 1098
DdeI	CTNAG	3 cut(s)	706, 1044, 1101
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	2 cut(s)	414, 873
DpnII	GATC	2 cut(s)	412, 871
EaeI	YGGCCR	1 cut(s)	1128
Eam1104I	CTCTTC	1 cut(s)	939
EarI	CTCTTC	1 cut(s)	939
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	973, 1131
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	196, 292
Eco53kI	GAGCTC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	973, 1131
EcoT38I	GRGCYC	1 cut(s)	78
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	973, 1131
FaeI	CATG	4 cut(s)	258, 387, 762, 880
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	4 cut(s)	254, 383, 758, 876
FblI	GTMKAC	1 cut(s)	602
Fnu4HI	GCNGC	3 cut(s)	639, 642, 645
FokI	GGATG	4 cut(s)	163, 301, 539, 1001
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	3 cut(s)	639, 642, 645
FspBI	CTAG	4 cut(s)	65, 359, 671, 1156
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	639, 642, 645
GsaI	CCCAGC	1 cut(s)	695
GsuI	CTGGAG	2 cut(s)	459, 872
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	551, 1072, 1130
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	258, 387, 762, 880
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	2 cut(s)	703, 715
HindII	GTYRAC	2 cut(s)	703, 715
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	3 cut(s)	44, 667, 704
Hpy166II	GTNNAC	3 cut(s)	603, 703, 715
Hpy188I	TCNGA	8 cut(s)	80, 232, 352, 466, 709, 961, 1047, 1104
Hpy188III	TCNNGA	4 cut(s)	96, 671, 885, 1034
Hpy8I	GTNNAC	3 cut(s)	603, 703, 715
HpyAV	CCTTC	5 cut(s)	64, 93, 163, 266, 471
HpyCH4III	ACNGT	4 cut(s)	132, 524, 600, 1093
HpyCH4IV	ACGT	1 cut(s)	925
HpyCH4V	TGCA	7 cut(s)	146, 446, 569, 647, 780, 923, 1140
HpyF10VI	GCNNNNNNNGC	5 cut(s)	434, 443, 644, 906, 1078
HpyF3I	CTNAG	3 cut(s)	706, 1044, 1101
HpySE526I	ACGT	1 cut(s)	925
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	258, 387, 762, 880
HspAI	GCGC	1 cut(s)	5
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	412, 871
LmnI	GCTCC	7 cut(s)	73, 81, 425, 478, 823, 853, 1015
Lsp1109I	GCAGC	3 cut(s)	625, 628, 631
LweI	GCATC	1 cut(s)	141
MaeI	CTAG	4 cut(s)	65, 359, 671, 1156
MaeII	ACGT	1 cut(s)	925
MaeIII	GTNAC	3 cut(s)	126, 761, 1087
MalI	GATC	2 cut(s)	414, 873
MboI	GATC	2 cut(s)	412, 871
MboII	GAAGA	4 cut(s)	38, 477, 956, 1049
MfeI	CAATTG	1 cut(s)	408
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	1130
MluNI	TGGCCA	1 cut(s)	1130
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	698
MmeI	TCCRAC	2 cut(s)	1005, 1037
Mox20I	TGGCCA	1 cut(s)	1130
MscI	TGGCCA	1 cut(s)	1130
MseI	TTAA	2 cut(s)	1001, 1118
Msp20I	TGGCCA	1 cut(s)	1130
MspA1I	CMGCKG	2 cut(s)	56, 695
MunI	CAATTG	1 cut(s)	408
MwoI	GCNNNNNNNGC	5 cut(s)	434, 443, 644, 906, 1078
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	2 cut(s)	412, 871
NlaIII	CATG	4 cut(s)	258, 387, 762, 880
NlaIV	GGNNCC	3 cut(s)	6, 294, 550
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	1087
NspI	RCATGY	1 cut(s)	762
PfeI	GAWTC	2 cut(s)	44, 667
PflFI	GACNNNGTC	1 cut(s)	953
PflMI	CCANNNNNTGG	1 cut(s)	422
PkrI	GCNGC	3 cut(s)	640, 643, 646
PleI	GAGTC	1 cut(s)	698
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	698
PpuMI	RGGWCCY	1 cut(s)	196
Psp124BI	GAGCTC	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	691
PspN4I	GGNNCC	3 cut(s)	6, 294, 550
PspPI	GGNCC	4 cut(s)	196, 292, 549, 1070
PspPPI	RGGWCCY	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	871
PsyI	GACNNNGTC	1 cut(s)	953
PvuII	CAGCTG	2 cut(s)	56, 695
RsaI	GTAC	3 cut(s)	453, 498, 1099
RsaNI	GTAC	3 cut(s)	452, 497, 1098
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	2 cut(s)	1001, 1118
SatI	GCNGC	3 cut(s)	639, 642, 645
Sau3AI	GATC	2 cut(s)	412, 871
Sau96I	GGNCC	4 cut(s)	196, 292, 549, 1070
ScaI	AGTACT	1 cut(s)	1099
SchI	GAGTC	1 cut(s)	698
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	1 cut(s)	141
SfcI	CTRYAG	1 cut(s)	240
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	196, 292
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	142
SspMI	CTAG	4 cut(s)	65, 359, 671, 1156
SstI	GAGCTC	1 cut(s)	78
StyI	CCWWGG	2 cut(s)	973, 1131
TaaI	ACNGT	4 cut(s)	132, 524, 600, 1093
TaiI	ACGT	1 cut(s)	928
TaqI	TCGA	1 cut(s)	42
TatI	WGTACW	3 cut(s)	451, 496, 1097
TfiI	GAWTC	2 cut(s)	44, 667
Tru1I	TTAA	2 cut(s)	1001, 1118
Tru9I	TTAA	2 cut(s)	1001, 1118
TscAI	CASTG	2 cut(s)	290, 1096
TseFI	GTSAC	1 cut(s)	1087
TseI	GCWGC	3 cut(s)	638, 641, 644
Tsp45I	GTSAC	1 cut(s)	1087
TspDTI	ATGAA	3 cut(s)	861, 893, 1067
TspGWI	ACGGA	1 cut(s)	1001
TspRI	CASTG	2 cut(s)	290, 1096
Tth111I	GACNNNGTC	1 cut(s)	953
Van91I	CCANNNNNTGG	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	196, 292
XbaI	TCTAGA	1 cut(s)	670
XceI	RCATGY	1 cut(s)	762
XmiI	GTMKAC	1 cut(s)	602
XspI	CTAG	4 cut(s)	65, 359, 671, 1156
ZrmI	AGTACT	1 cut(s)	1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.