FvH4_1g25290

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018361
Physical Location & Seq
Forward (+)
17074709 .. 17076791
2083 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25290.t1

Sequence Viewer

Length: 819 bp
ATGGACAGCCTTGAAGAGAGAGTTTCTGTGTTCTACTATGAAAATTCCGATGAATCTGATCAGAATTCCTCGGATTATGAATTCGATGACGACACTGGCGATTCAGATGCCAAACGACAGAGGATCTTGTACTGGGAATCACAACAAGCTGTGCTTCAGGAGGTCTTAGAACGAAGCAGTTTAACCGGAACAAAGTTGCGGCAAGAGGTTTGCGATATCACAGAGAAGGTGAGATCAGAGCAAGGAGATTTGTGTCGATGCCGCAACAAGGCCAATGTTGATGCATGCAACAATTGCTTGCGGCATGAAATCGTCAACTCACTTTGCAATAAGGGATTCAAAGCCTCACTATGCATATCAAAATGGTCCGAGACCAAAAAAATACCAAGAGGAACTCATGAGTACATCGAAGTGATTGGAAACTCATCCTCATCAAGCCGAAAAAAGCAACTTTTATATGTAGTTGAACTGGAATTTCGCGATCAATTCGAGATTGCAAAAGCATGCAATGAGTACCGGAATCTGGTAAGGATGTTACCAAGAACTTATGTAGGAAAACCCGACTGCCTCAAGGCCATTGTTCGAGTTGTATGCGATGCAGCCAAGCGATCAATGAAGGAAAGCAGAATGCATATGGGTCCGTGGCGAAAGGGAAGCTTCATGATAATGAAATGGTCGGCTTCCATTGAGAAGTTGGCTTCAATTGAAGCGGCATCATCGACATCAAATAGATATGAAGGGCAGTCATCACTTTCATCAGAAGTAGCACATGCATCATCTTATCGATACTTTGCAGCTCCGGCTGTAGCAGTCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

273

Amino Acids

30.99

Weight (kDa)

7.49

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 11 - 230 2.8e-61 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25290
rosa_chinensis RchiOBHm_Chr2g0123301
rosa_multiflora Rmu_sc0001917.1_g000003
rosa_roxburghii Rroxscaffold_2G00120790
rosa_rugosa Rorug02G0244300 Rorug02G0244400
rosa_samantha Rh2AG303500 Rh2CG290100 Rh2DG327500
rosa_wichuraiana Rw2G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 480
AciI CCGC 4 cut(s) 199, 262, 301, 710
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 4 cut(s) 43, 64, 80, 473
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 3 cut(s) 131, 404, 515
AfiI CCNNNNNNNGG 2 cut(s) 268, 523
AgsI TTSAA 5 cut(s) 14, 340, 467, 702, 707
AluBI AGCT 3 cut(s) 149, 657, 797
AluI AGCT 3 cut(s) 149, 657, 797
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 1 cut(s) 131
AoxI GGCC 2 cut(s) 270, 573
ApeKI GCWGC 2 cut(s) 599, 794
ApoI RAATTY 4 cut(s) 43, 64, 80, 473
AspS9I GGNCC 2 cut(s) 366, 638
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 2 cut(s) 366, 638
BbvI GCAGC 2 cut(s) 611, 806
BcgI CGANNNNNNTGC 4 cut(s) 89, 123, 573, 607
BclI TGATCA 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 804
BisI GCNGC 6 cut(s) 200, 262, 302, 600, 711, 795
BlsI GCNGC 6 cut(s) 201, 263, 303, 601, 712, 796
Bme18I GGWCC 2 cut(s) 366, 638
BmgT120I GGNCC 2 cut(s) 366, 638
BmiI GGNNCC 1 cut(s) 639
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 6 cut(s) 97, 248, 271, 586, 722, 782
BmuI ACTGGG 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 554
Bsa29I ATCGAT 1 cut(s) 784
BsaAI YACGTR 1 cut(s) 816
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 69, 641
BsaWI WCCGGW 2 cut(s) 185, 516
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 523
Bse1I ACTGG 3 cut(s) 100, 137, 474
Bse3DI GCAATG 1 cut(s) 514
BseCI ATCGAT 1 cut(s) 784
BseDI CCNNGG 2 cut(s) 69, 641
BseGI GGATG 2 cut(s) 425, 537
BseLI CCNNNNNNNGG 2 cut(s) 268, 523
BseMI GCAATG 1 cut(s) 514
BseNI ACTGG 3 cut(s) 100, 137, 474
BseXI GCAGC 2 cut(s) 611, 806
Bsh1236I CGCG 1 cut(s) 480
BshFI GGCC 2 cut(s) 272, 575
BshVI ATCGAT 1 cut(s) 784
BsiSI CCGG 3 cut(s) 186, 517, 800
BslI CCNNNNNNNGG 2 cut(s) 268, 523
BsmAI GTCTC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 633
BsnI GGCC 2 cut(s) 272, 575
Bso31I GGTCTC 1 cut(s) 365
Bsp143I GATC 5 cut(s) 58, 123, 233, 481, 608
Bsp68I TCGCGA 1 cut(s) 480
BspACI CCGC 4 cut(s) 199, 262, 301, 710
BspANI GGCC 2 cut(s) 272, 575
BspDI ATCGAT 1 cut(s) 784
BspFNI CGCG 1 cut(s) 480
BspHI TCATGA 2 cut(s) 397, 660
BspLI GGNNCC 1 cut(s) 639
BspPI GGATC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 365
BsrDI GCAATG 1 cut(s) 514
BsrI ACTGG 3 cut(s) 100, 137, 474
BssECI CCNNGG 2 cut(s) 69, 641
BssMI GATC 5 cut(s) 58, 123, 233, 481, 608
Bst6I CTCTTC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 294
BstBAI YACGTR 1 cut(s) 816
BstC8I GCNNGC 3 cut(s) 286, 299, 505
BstDEI CTNAG 1 cut(s) 166
BstDSI CCRYGG 1 cut(s) 641
BstF5I GGATG 2 cut(s) 425, 537
BstFNI CGCG 1 cut(s) 480
BstKTI GATC 5 cut(s) 61, 126, 236, 484, 611
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 5 cut(s) 58, 123, 233, 481, 608
BstMWI GCNNNNNNNGC 2 cut(s) 294, 800
BstNSI RCATGY 3 cut(s) 288, 507, 773
BstSFI CTRYAG 1 cut(s) 804
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 2 cut(s) 611, 806
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 784
BsuRI GGCC 2 cut(s) 272, 575
BsuTUI ATCGAT 1 cut(s) 784
BtgI CCRYGG 1 cut(s) 641
BtgZI GCGATG 1 cut(s) 609
BtsCI GGATG 2 cut(s) 425, 537
BtsIMutI CAGTG 1 cut(s) 93
BtuMI TCGCGA 1 cut(s) 480
Cac8I GCNNGC 3 cut(s) 286, 299, 505
CciI TCATGA 2 cut(s) 397, 660
Cfr13I GGNCC 2 cut(s) 366, 638
ClaI ATCGAT 1 cut(s) 784
Csp6I GTAC 3 cut(s) 130, 403, 514
CviAII CATG 6 cut(s) 285, 305, 398, 504, 661, 770
CviQI GTAC 3 cut(s) 130, 403, 514
DdeI CTNAG 1 cut(s) 166
DpnI GATC 5 cut(s) 60, 125, 235, 483, 610
DpnII GATC 5 cut(s) 58, 123, 233, 481, 608
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 365
Eco32I GATATC 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 366, 638
Eco57I CTGAAG 1 cut(s) 140
EcoRI GAATTC 2 cut(s) 64, 80
EcoRV GATATC 1 cut(s) 217
EcoT22I ATGCAT 4 cut(s) 286, 356, 633, 775
FaeI CATG 6 cut(s) 288, 308, 401, 507, 664, 773
FalI AAGNNNNNCTT 4 cut(s) 138, 170, 641, 673
FatI CATG 6 cut(s) 284, 304, 397, 503, 660, 769
FauNDI CATATG 1 cut(s) 633
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 6 cut(s) 200, 262, 302, 600, 711, 795
FokI GGATG 2 cut(s) 412, 544
Fsp4HI GCNGC 6 cut(s) 200, 262, 302, 600, 711, 795
GluI GCNGC 6 cut(s) 200, 262, 302, 600, 711, 795
HaeIII GGCC 2 cut(s) 272, 575
HapII CCGG 3 cut(s) 186, 517, 800
Hin1II CATG 6 cut(s) 288, 308, 401, 507, 664, 773
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 655
HinfI GANTC 5 cut(s) 53, 101, 137, 336, 520
HpaII CCGG 3 cut(s) 186, 517, 800
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 8 cut(s) 49, 58, 63, 73, 106, 238, 370, 760
Hpy188III TCNNGA 5 cut(s) 158, 398, 479, 490, 661
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 3 cut(s) 220, 610, 731
HpyCH4IV ACGT 1 cut(s) 815
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 800
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 815
Hsp92II CATG 6 cut(s) 288, 308, 401, 507, 664, 773
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 5 cut(s) 58, 123, 233, 481, 608
LmnI GCTCC 1 cut(s) 802
LpnPI CCDG 8 cut(s) 81, 118, 143, 199, 455, 509, 530, 813
Lsp1109I GCAGC 2 cut(s) 611, 806
LweI GCATC 6 cut(s) 97, 248, 271, 586, 722, 782
MaeII ACGT 1 cut(s) 815
MaeIII GTNAC 2 cut(s) 534, 811
MalI GATC 5 cut(s) 60, 125, 235, 483, 610
MboI GATC 5 cut(s) 58, 123, 233, 481, 608
MboII GAAGA 1 cut(s) 26
MfeI CAATTG 2 cut(s) 292, 702
MflI RGATCY 1 cut(s) 123
MluCI AATT 7 cut(s) 43, 64, 80, 292, 473, 485, 702
MnlI CCTC 8 cut(s) 79, 114, 154, 199, 355, 383, 439, 578
Mph1103I ATGCAT 4 cut(s) 286, 356, 633, 775
MseI TTAA 1 cut(s) 182
MslI CAYNNNNRTG 2 cut(s) 410, 665
MspI CCGG 3 cut(s) 186, 517, 800
MunI CAATTG 2 cut(s) 292, 702
Mva1269I GAATGC 1 cut(s) 633
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 2 cut(s) 294, 800
NdeI CATATG 1 cut(s) 633
NdeII GATC 5 cut(s) 58, 123, 233, 481, 608
NlaIII CATG 6 cut(s) 288, 308, 401, 507, 664, 773
NlaIV GGNNCC 1 cut(s) 639
NmuCI GTSAC 1 cut(s) 811
NruI TCGCGA 1 cut(s) 480
NsiI ATGCAT 4 cut(s) 286, 356, 633, 775
NspI RCATGY 3 cut(s) 288, 507, 773
PaeI GCATGC 2 cut(s) 288, 507
PagI TCATGA 2 cut(s) 397, 660
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 633
PfeI GAWTC 5 cut(s) 53, 101, 137, 336, 520
PkrI GCNGC 6 cut(s) 201, 263, 303, 601, 712, 796
Ppu21I YACGTR 1 cut(s) 816
PspN4I GGNNCC 1 cut(s) 639
PspPI GGNCC 2 cut(s) 366, 638
PsuI RGATCY 1 cut(s) 123
RruI TCGCGA 1 cut(s) 480
RsaI GTAC 3 cut(s) 131, 404, 515
RsaNI GTAC 3 cut(s) 130, 403, 514
RseI CAYNNNNRTG 2 cut(s) 410, 665
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 6 cut(s) 200, 262, 302, 600, 711, 795
Sau3AI GATC 5 cut(s) 58, 123, 233, 481, 608
Sau96I GGNCC 2 cut(s) 366, 638
SetI ASST 7 cut(s) 151, 165, 210, 231, 659, 799, 818
SfaNI GCATC 6 cut(s) 97, 248, 271, 586, 722, 782
SfcI CTRYAG 1 cut(s) 804
SinI GGWCC 2 cut(s) 366, 638
SmiMI CAYNNNNRTG 2 cut(s) 410, 665
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
SphI GCATGC 2 cut(s) 288, 507
Sse9I AATT 7 cut(s) 43, 64, 80, 292, 473, 485, 702
SsiI CCGC 4 cut(s) 199, 262, 301, 710
TaiI ACGT 1 cut(s) 818
TaqI TCGA 7 cut(s) 84, 256, 408, 489, 583, 719, 784
TasI AATT 7 cut(s) 43, 64, 80, 292, 473, 485, 702
TatI WGTACW 2 cut(s) 129, 402
TauI GCSGC 4 cut(s) 202, 264, 304, 713
TfiI GAWTC 5 cut(s) 53, 101, 137, 336, 520
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 811
TseI GCWGC 2 cut(s) 599, 794
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 9 cut(s) 54, 66, 93, 321, 629, 649, 683, 744, 750
TspGWI ACGGA 1 cut(s) 630
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 366, 638
XapI RAATTY 4 cut(s) 43, 64, 80, 473
XceI RCATGY 3 cut(s) 288, 507, 773
XcmI CCANNNNNNNNNTGG 1 cut(s) 691
Zsp2I ATGCAT 4 cut(s) 286, 356, 633, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.