Rroxscaffold_2G00120790

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018361
Physical Location & Seq
Reverse (-)
53165771 .. 53167773
2003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00120790.1

Sequence Viewer

Length: 810 bp
ATGGACAGCCTTGAAGAGAGAGTTTCTGTGTTTTACTATGAAAATTCTGATGAATATGATCATAATTCCTCCAATTATGAATTCGATGATGACGCTGGCGATTCTGATGCCAAACGACAGAGGATCTTGTACTGGGAATCACAACAAGCTTTGCTTCAGGAGATTTTAGACCGAAGCAGATTAACCGGATCAAAGTTGCGGCAAGAGGTTCGCGAAATCACAGAGAAAGCGAGATCAGAGCAAAGAGGTTTGTGTCGATGCCACAAACCTAATGTTGATGCATGCAACAACTGCTTGCGACATGGAATCGTCAACTCGCTTTGCGATAAAGGATTTAAAGCCTCTCTATCCATATCAAAATGGTCCGAAACCAAAAAAATTCCAGGAGGGACTCATGAGTACATCGAAGTCACTGGAAACACGTCCACAAGCCGAACAAAGCAACTTTTCTATGTAGTTGAACTGGAATTTCGTGATCAATTCGAGATTGCAAAAGCAGGCAATGAGTACCGAAATCTCGTAAGGATGTTACCACAAACTTACGTTGGAAAAGCTGACTACCTCAAGGCCATTGTTCGAATTGTATGCGATGCAGCCAAGCGATCAATGAAGGAAAGCAGAATGCATATAGGTCCCTGGCGAAAGAGAAGCTTCATGCTAATGAAATGGTCGGCTTCCATTGAGAGGTTGGCTTCTGTTGAATCGGTACCGACATCAAATAGATATAACGTGCAGTCATCACTTTCATCAGAGAGACCGCATGCATCTTCTTATAGATACTTTGCAGCTCCAACTGTAGTAGTCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

269

Amino Acids

31.04

Weight (kDa)

8.79

Isoelectric Point (pI)

57.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 14 - 229 5e-59 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25290
rosa_chinensis RchiOBHm_Chr2g0123301
rosa_multiflora Rmu_sc0001917.1_g000003
rosa_roxburghii Rroxscaffold_2G00120790
rosa_rugosa Rorug02G0244300 Rorug02G0244400
rosa_samantha Rh2AG303500 Rh2CG290100 Rh2DG327500
rosa_wichuraiana Rw2G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 706
AccB1I GGYRCC 1 cut(s) 706
AccII CGCG 1 cut(s) 213
AciI CCGC 2 cut(s) 199, 758
AclWI GGATC 2 cut(s) 131, 196
AcsI RAATTY 4 cut(s) 43, 80, 378, 467
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 4 cut(s) 131, 401, 509, 708
AfiI CCNNNNNNNGG 1 cut(s) 684
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 3 cut(s) 14, 461, 701
AjiI CACGTC 1 cut(s) 423
AjnI CCWGG 2 cut(s) 382, 635
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 4 cut(s) 149, 554, 651, 788
AluI AGCT 4 cut(s) 149, 554, 651, 788
Alw26I GTCTC 1 cut(s) 748
AlwI GGATC 2 cut(s) 131, 196
AoxI GGCC 1 cut(s) 567
ApeKI GCWGC 2 cut(s) 593, 785
ApoI RAATTY 4 cut(s) 43, 80, 378, 467
Asp718I GGTACC 1 cut(s) 706
AspS9I GGNCC 2 cut(s) 363, 632
AsuII TTCGAA 1 cut(s) 577
AvaII GGWCC 2 cut(s) 363, 632
BanI GGYRCC 1 cut(s) 706
BbvI GCAGC 2 cut(s) 605, 797
BcgI CGANNNNNNTGC 6 cut(s) 89, 123, 191, 225, 567, 601
BciT130I CCWGG 2 cut(s) 384, 637
BclI TGATCA 2 cut(s) 58, 475
BcoDI GTCTC 1 cut(s) 748
BfmI CTRYAG 1 cut(s) 795
BisI GCNGC 3 cut(s) 200, 594, 786
BlsI GCNGC 3 cut(s) 201, 595, 787
Bme1390I CCNGG 2 cut(s) 384, 637
Bme18I GGWCC 2 cut(s) 363, 632
BmgBI CACGTC 1 cut(s) 423
BmgT120I GGNCC 2 cut(s) 363, 632
BmiI GGNNCC 2 cut(s) 634, 708
BmrFI CCNGG 2 cut(s) 384, 637
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 5 cut(s) 97, 248, 268, 580, 773
BmuI ACTGGG 1 cut(s) 142
Bpu14I TTCGAA 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 548
BsaAI YACGTR 1 cut(s) 807
BsaI GGTCTC 1 cut(s) 748
BsaJI CCNNGG 1 cut(s) 635
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 684
Bse1I ACTGG 3 cut(s) 137, 418, 468
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 2 cut(s) 384, 637
BseDI CCNNGG 1 cut(s) 635
BseGI GGATG 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 684
BseMI GCAATG 1 cut(s) 508
BseNI ACTGG 3 cut(s) 137, 418, 468
BseXI GCAGC 2 cut(s) 605, 797
BsgI GTGCAG 1 cut(s) 752
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 1 cut(s) 569
BshNI GGYRCC 1 cut(s) 706
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 2 cut(s) 403, 618
BslI CCNNNNNNNGG 1 cut(s) 684
BsmAI GTCTC 1 cut(s) 748
BsmFI GGGAC 2 cut(s) 403, 618
BsmI GAATGC 1 cut(s) 627
BsnI GGCC 1 cut(s) 569
Bso31I GGTCTC 1 cut(s) 748
Bsp119I TTCGAA 1 cut(s) 577
Bsp143I GATC 6 cut(s) 58, 123, 188, 233, 475, 602
Bsp68I TCGCGA 1 cut(s) 213
BspACI CCGC 2 cut(s) 199, 758
BspANI GGCC 1 cut(s) 569
BspFNI CGCG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 2 cut(s) 634, 708
BspPI GGATC 2 cut(s) 131, 196
BspT104I TTCGAA 1 cut(s) 577
BspT107I GGYRCC 1 cut(s) 706
BspTNI GGTCTC 1 cut(s) 748
BsrDI GCAATG 1 cut(s) 508
BsrI ACTGG 3 cut(s) 137, 418, 468
BssECI CCNNGG 1 cut(s) 635
BssMI GATC 6 cut(s) 58, 123, 188, 233, 475, 602
Bst2UI CCWGG 2 cut(s) 384, 637
Bst4CI ACNGT 1 cut(s) 796
Bst6I CTCTTC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 807
BstBI TTCGAA 1 cut(s) 577
BstC8I GCNNGC 5 cut(s) 97, 283, 296, 499, 762
BstF5I GGATG 1 cut(s) 531
BstFNI CGCG 1 cut(s) 213
BstKTI GATC 6 cut(s) 61, 126, 191, 236, 478, 605
BstMAI GTCTC 1 cut(s) 748
BstMBI GATC 6 cut(s) 58, 123, 188, 233, 475, 602
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 2 cut(s) 384, 637
BstNSI RCATGY 2 cut(s) 285, 764
BstSCI CCNGG 2 cut(s) 382, 635
BstSFI CTRYAG 1 cut(s) 795
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 605, 797
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 1 cut(s) 569
BtgZI GCGATG 1 cut(s) 603
BtrI CACGTC 1 cut(s) 423
BtsCI GGATG 1 cut(s) 531
BtsIMutI CAGTG 1 cut(s) 411
BtuMI TCGCGA 1 cut(s) 213
Cac8I GCNNGC 5 cut(s) 97, 283, 296, 499, 762
CciI TCATGA 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 363, 632
CseI GACGC 1 cut(s) 101
Csp6I GTAC 4 cut(s) 130, 400, 508, 707
CviAII CATG 5 cut(s) 282, 302, 395, 655, 761
CviQI GTAC 4 cut(s) 130, 400, 508, 707
DpnI GATC 6 cut(s) 60, 125, 190, 235, 477, 604
DpnII GATC 6 cut(s) 58, 123, 188, 233, 475, 602
DraI TTTAAA 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 748
Eco47I GGWCC 2 cut(s) 363, 632
Eco57I CTGAAG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 382, 635
EcoT22I ATGCAT 3 cut(s) 283, 627, 766
FaeI CATG 5 cut(s) 285, 305, 398, 658, 764
FalI AAGNNNNNCTT 4 cut(s) 138, 170, 635, 667
FaqI GGGAC 2 cut(s) 403, 618
FatI CATG 5 cut(s) 281, 301, 394, 654, 760
FbaI TGATCA 2 cut(s) 58, 475
Fnu4HI GCNGC 3 cut(s) 200, 594, 786
FokI GGATG 1 cut(s) 538
Fsp4HI GCNGC 3 cut(s) 200, 594, 786
GluI GCNGC 3 cut(s) 200, 594, 786
HaeIII GGCC 1 cut(s) 569
HapII CCGG 1 cut(s) 186
HgaI GACGC 1 cut(s) 101
Hin1II CATG 5 cut(s) 285, 305, 398, 658, 764
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 2 cut(s) 147, 649
HinfI GANTC 5 cut(s) 101, 137, 306, 391, 701
HpaII CCGG 1 cut(s) 186
Hpy166II GTNNAC 2 cut(s) 313, 426
Hpy188I TCNGA 5 cut(s) 49, 106, 238, 367, 751
Hpy188III TCNNGA 5 cut(s) 158, 212, 395, 473, 484
Hpy8I GTNNAC 2 cut(s) 313, 426
HpyAV CCTTC 1 cut(s) 604
HpyCH4III ACNGT 1 cut(s) 796
HpyCH4IV ACGT 4 cut(s) 422, 543, 729, 806
HpyCH4V TGCA 8 cut(s) 281, 285, 491, 593, 625, 733, 764, 785
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpySE526I ACGT 4 cut(s) 422, 543, 729, 806
Hsp92II CATG 5 cut(s) 285, 305, 398, 658, 764
KpnI GGTACC 1 cut(s) 710
Ksp22I TGATCA 2 cut(s) 58, 475
Kzo9I GATC 6 cut(s) 58, 123, 188, 233, 475, 602
LmnI GCTCC 1 cut(s) 793
Lsp1109I GCAGC 2 cut(s) 605, 797
LweI GCATC 5 cut(s) 97, 248, 268, 580, 773
MaeII ACGT 4 cut(s) 422, 543, 729, 806
MaeIII GTNAC 3 cut(s) 409, 528, 802
MalI GATC 6 cut(s) 60, 125, 190, 235, 477, 604
MboI GATC 6 cut(s) 58, 123, 188, 233, 475, 602
MboII GAAGA 2 cut(s) 26, 759
MflI RGATCY 1 cut(s) 123
MluCI AATT 8 cut(s) 43, 64, 73, 80, 378, 467, 479, 579
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 526
MnlI CCTC 8 cut(s) 79, 114, 199, 239, 352, 380, 572, 678
Mph1103I ATGCAT 3 cut(s) 283, 627, 766
MseI TTAA 2 cut(s) 182, 336
MslI CAYNNNNRTG 1 cut(s) 659
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 2 cut(s) 384, 637
Mva1269I GAATGC 1 cut(s) 627
MvaI CCWGG 2 cut(s) 384, 637
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 291
NdeII GATC 6 cut(s) 58, 123, 188, 233, 475, 602
NlaIII CATG 5 cut(s) 285, 305, 398, 658, 764
NlaIV GGNNCC 2 cut(s) 634, 708
NmuCI GTSAC 2 cut(s) 409, 802
NruI TCGCGA 1 cut(s) 213
NsiI ATGCAT 3 cut(s) 283, 627, 766
NspI RCATGY 2 cut(s) 285, 764
NspV TTCGAA 1 cut(s) 577
PaeI GCATGC 2 cut(s) 285, 764
PagI TCATGA 1 cut(s) 394
PctI GAATGC 1 cut(s) 627
PfeI GAWTC 4 cut(s) 101, 137, 306, 701
PfoI TCCNGGA 1 cut(s) 382
PkrI GCNGC 3 cut(s) 201, 595, 787
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Ppu21I YACGTR 1 cut(s) 807
PpuMI RGGWCCY 1 cut(s) 632
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 2 cut(s) 382, 635
PspGI CCWGG 2 cut(s) 382, 635
PspN4I GGNNCC 2 cut(s) 634, 708
PspPI GGNCC 2 cut(s) 363, 632
PspPPI RGGWCCY 1 cut(s) 632
PsuI RGATCY 1 cut(s) 123
RruI TCGCGA 1 cut(s) 213
RsaI GTAC 4 cut(s) 131, 401, 509, 708
RsaNI GTAC 4 cut(s) 130, 400, 508, 707
RseI CAYNNNNRTG 1 cut(s) 659
SaqAI TTAA 2 cut(s) 182, 336
SatI GCNGC 3 cut(s) 200, 594, 786
Sau3AI GATC 6 cut(s) 58, 123, 188, 233, 475, 602
Sau96I GGNCC 2 cut(s) 363, 632
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 2 cut(s) 384, 637
SfaNI GCATC 5 cut(s) 97, 248, 268, 580, 773
SfcI CTRYAG 1 cut(s) 795
SfuI TTCGAA 1 cut(s) 577
SinI GGWCC 2 cut(s) 363, 632
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
SphI GCATGC 2 cut(s) 285, 764
Sse9I AATT 8 cut(s) 43, 64, 73, 80, 378, 467, 479, 579
SsiI CCGC 2 cut(s) 199, 758
StyD4I CCNGG 2 cut(s) 382, 635
TaaI ACNGT 1 cut(s) 796
TaiI ACGT 4 cut(s) 425, 546, 732, 809
TaqI TCGA 5 cut(s) 84, 256, 405, 483, 577
TaqII GACCGA 1 cut(s) 186
TasI AATT 8 cut(s) 43, 64, 73, 80, 378, 467, 479, 579
TatI WGTACW 2 cut(s) 129, 399
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 4 cut(s) 101, 137, 306, 701
Tru1I TTAA 2 cut(s) 182, 336
Tru9I TTAA 2 cut(s) 182, 336
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 2 cut(s) 409, 802
TseI GCWGC 2 cut(s) 593, 785
Tsp45I GTSAC 2 cut(s) 409, 802
TspDTI ATGAA 7 cut(s) 54, 66, 93, 623, 643, 677, 735
TspRI CASTG 1 cut(s) 418
VpaK11BI GGWCC 2 cut(s) 363, 632
XapI RAATTY 4 cut(s) 43, 80, 378, 467
XceI RCATGY 2 cut(s) 285, 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
Zsp2I ATGCAT 3 cut(s) 283, 627, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.