RchiOBHm_Chr2g0123301

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018361
Physical Location & Seq
Forward (+)
36429487 .. 36431420
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49561

Sequence Viewer

Length: 810 bp
ATGGACAGCCTTGAAGAGAGAGTTTCTGTGTTTTACCATGAAAATTCCGATGAATATGATCATAATTCCTCCGATTATGAATTCGATGATGACGCTGGCGATTCTGATGCCAAACGACAGAGGATCTTGTACTGGGAATCACAACAAGCTTTGCTTCAGGAGATTTTAGAACGAAGCAGATTAACCGGATCAAAGTTGCGGCAAGAGGTTCGCGAAATCACAGAGAAAGCGAGATCAGAGCAAAGAGATTTGTGTCGATGCCACAAACCTAATGTTGATGCATGCAACAACTGCTTGCGACATGGAATCGTCAACTCGCTTTGCGATAAAGGATTTAAAGCCTCTCTATGCATATCAAAATGGTCCGAAACCAAAAAAATTCCAGGAGGGACTCATGAGTACATCGAAGTCACTGGAAACACGTCCACAAGCCGAACAAAGCAACTTTTCTATGTAGTTGAACTGGAATTTGGTGATCAATTCGAGATTGCAAAAGCATGCAATGAGTACCGAAATCTCGTAAGGATGTTACCACAAACTTATGTAGGAAAAGCTGACTACCTCAAGGCCATTGTTCGAATTGTATGCGATGCAGCCAAGCGATCAATGAAGGAAAGCAGAATGCATATGGGTCCGTGGCGAAAGAGAGGCTTCATGCTAATGAAATGGTCGGCTTCCATTGAGAGGTTGGCTTCTGTTGAATCGGTATCAACATCAAATAGATATAACGTGCAATCATTACTTTCATCAGAGAGAGCGCATGCATCATCTTATAGATACTTTGCAGCTCCAACTGTAGTAGTCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

269

Amino Acids

31.03

Weight (kDa)

8.06

Isoelectric Point (pI)

54.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 9 - 229 3.7e-60 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018361)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25290
rosa_chinensis RchiOBHm_Chr2g0123301
rosa_multiflora Rmu_sc0001917.1_g000003
rosa_roxburghii Rroxscaffold_2G00120790
rosa_rugosa Rorug02G0244300 Rorug02G0244400
rosa_samantha Rh2AG303500 Rh2CG290100 Rh2DG327500
rosa_wichuraiana Rw2G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 213
AciI CCGC 1 cut(s) 199
AclWI GGATC 2 cut(s) 131, 196
AcsI RAATTY 4 cut(s) 43, 80, 378, 467
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 3 cut(s) 131, 401, 509
AfiI CCNNNNNNNGG 1 cut(s) 684
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 3 cut(s) 14, 461, 701
AjiI CACGTC 1 cut(s) 423
AjnI CCWGG 1 cut(s) 382
AjuI GAANNNNNNNTTGG 2 cut(s) 453, 485
AluBI AGCT 3 cut(s) 149, 554, 788
AluI AGCT 3 cut(s) 149, 554, 788
AlwI GGATC 2 cut(s) 131, 196
AoxI GGCC 1 cut(s) 567
ApeKI GCWGC 2 cut(s) 593, 785
ApoI RAATTY 4 cut(s) 43, 80, 378, 467
AspLEI GCGC 1 cut(s) 760
AspS9I GGNCC 2 cut(s) 363, 632
AsuHPI GGTGA 1 cut(s) 485
AsuII TTCGAA 1 cut(s) 577
AvaII GGWCC 2 cut(s) 363, 632
BbvI GCAGC 2 cut(s) 605, 797
BcgI CGANNNNNNTGC 6 cut(s) 89, 123, 191, 225, 567, 601
BciT130I CCWGG 1 cut(s) 384
BclI TGATCA 2 cut(s) 58, 475
BfmI CTRYAG 1 cut(s) 795
BisI GCNGC 3 cut(s) 200, 594, 786
BlsI GCNGC 3 cut(s) 201, 595, 787
Bme1390I CCNGG 1 cut(s) 384
Bme18I GGWCC 2 cut(s) 363, 632
BmgBI CACGTC 1 cut(s) 423
BmgT120I GGNCC 2 cut(s) 363, 632
BmiI GGNNCC 1 cut(s) 633
BmrFI CCNGG 1 cut(s) 384
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 5 cut(s) 97, 248, 268, 580, 773
BmuI ACTGGG 1 cut(s) 142
Bpu14I TTCGAA 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 548
BsaAI YACGTR 1 cut(s) 807
BsaJI CCNNGG 1 cut(s) 635
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 1 cut(s) 684
Bse1I ACTGG 3 cut(s) 137, 418, 468
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 635
BseGI GGATG 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 684
BseMI GCAATG 1 cut(s) 508
BseNI ACTGG 3 cut(s) 137, 418, 468
BseXI GCAGC 2 cut(s) 605, 797
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 1 cut(s) 569
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 1 cut(s) 684
BsmFI GGGAC 1 cut(s) 403
BsmI GAATGC 1 cut(s) 627
BsnI GGCC 1 cut(s) 569
Bsp119I TTCGAA 1 cut(s) 577
Bsp143I GATC 6 cut(s) 58, 123, 188, 233, 475, 602
Bsp68I TCGCGA 1 cut(s) 213
BspACI CCGC 1 cut(s) 199
BspANI GGCC 1 cut(s) 569
BspFNI CGCG 1 cut(s) 213
BspHI TCATGA 1 cut(s) 394
BspLI GGNNCC 1 cut(s) 633
BspPI GGATC 2 cut(s) 131, 196
BspT104I TTCGAA 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 508
BsrI ACTGG 3 cut(s) 137, 418, 468
BssECI CCNNGG 1 cut(s) 635
BssMI GATC 6 cut(s) 58, 123, 188, 233, 475, 602
Bst2UI CCWGG 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 796
Bst6I CTCTTC 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 291
BstBAI YACGTR 1 cut(s) 807
BstBI TTCGAA 1 cut(s) 577
BstC8I GCNNGC 5 cut(s) 97, 283, 296, 499, 762
BstDSI CCRYGG 1 cut(s) 635
BstF5I GGATG 1 cut(s) 531
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 1 cut(s) 760
BstKTI GATC 6 cut(s) 61, 126, 191, 236, 478, 605
BstMBI GATC 6 cut(s) 58, 123, 188, 233, 475, 602
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 384
BstNSI RCATGY 3 cut(s) 285, 501, 764
BstSCI CCNGG 1 cut(s) 382
BstSFI CTRYAG 1 cut(s) 795
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 605, 797
BstX2I RGATCY 1 cut(s) 123
BstYI RGATCY 1 cut(s) 123
BsuRI GGCC 1 cut(s) 569
BtgI CCRYGG 1 cut(s) 635
BtgZI GCGATG 1 cut(s) 603
BtrI CACGTC 1 cut(s) 423
BtsCI GGATG 1 cut(s) 531
BtsIMutI CAGTG 1 cut(s) 411
BtuMI TCGCGA 1 cut(s) 213
Cac8I GCNNGC 5 cut(s) 97, 283, 296, 499, 762
CciI TCATGA 1 cut(s) 394
CfoI GCGC 1 cut(s) 760
Cfr13I GGNCC 2 cut(s) 363, 632
CseI GACGC 1 cut(s) 101
Csp6I GTAC 3 cut(s) 130, 400, 508
CviAII CATG 7 cut(s) 38, 282, 302, 395, 498, 655, 761
CviQI GTAC 3 cut(s) 130, 400, 508
DpnI GATC 6 cut(s) 60, 125, 190, 235, 477, 604
DpnII GATC 6 cut(s) 58, 123, 188, 233, 475, 602
DraI TTTAAA 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 363, 632
Eco57I CTGAAG 1 cut(s) 140
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 382
EcoT22I ATGCAT 4 cut(s) 283, 353, 627, 766
FaeI CATG 7 cut(s) 41, 285, 305, 398, 501, 658, 764
FalI AAGNNNNNCTT 4 cut(s) 138, 170, 635, 667
FaqI GGGAC 1 cut(s) 403
FatI CATG 7 cut(s) 37, 281, 301, 394, 497, 654, 760
FauNDI CATATG 1 cut(s) 627
FbaI TGATCA 2 cut(s) 58, 475
Fnu4HI GCNGC 3 cut(s) 200, 594, 786
FokI GGATG 1 cut(s) 538
Fsp4HI GCNGC 3 cut(s) 200, 594, 786
GlaI GCGC 1 cut(s) 759
GluI GCNGC 3 cut(s) 200, 594, 786
HaeIII GGCC 1 cut(s) 569
HapII CCGG 1 cut(s) 186
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 760
Hin1II CATG 7 cut(s) 41, 285, 305, 398, 501, 658, 764
Hin6I GCGC 1 cut(s) 758
HinP1I GCGC 1 cut(s) 758
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HindIII AAGCTT 1 cut(s) 147
HinfI GANTC 5 cut(s) 101, 137, 306, 391, 701
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 2 cut(s) 313, 426
Hpy188I TCNGA 6 cut(s) 49, 73, 106, 238, 367, 751
Hpy188III TCNNGA 4 cut(s) 158, 212, 395, 484
Hpy8I GTNNAC 2 cut(s) 313, 426
HpyAV CCTTC 1 cut(s) 604
HpyCH4III ACNGT 1 cut(s) 796
HpyCH4IV ACGT 3 cut(s) 422, 729, 806
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpySE526I ACGT 3 cut(s) 422, 729, 806
Hsp92II CATG 7 cut(s) 41, 285, 305, 398, 501, 658, 764
HspAI GCGC 1 cut(s) 758
Ksp22I TGATCA 2 cut(s) 58, 475
Kzo9I GATC 6 cut(s) 58, 123, 188, 233, 475, 602
LmnI GCTCC 1 cut(s) 793
LpnPI CCDG 8 cut(s) 81, 118, 143, 199, 369, 396, 399, 449
Lsp1109I GCAGC 2 cut(s) 605, 797
LweI GCATC 5 cut(s) 97, 248, 268, 580, 773
MaeII ACGT 3 cut(s) 422, 729, 806
MaeIII GTNAC 3 cut(s) 409, 528, 802
MalI GATC 6 cut(s) 60, 125, 190, 235, 477, 604
MboI GATC 6 cut(s) 58, 123, 188, 233, 475, 602
MboII GAAGA 1 cut(s) 26
MflI RGATCY 1 cut(s) 123
MluCI AATT 7 cut(s) 43, 64, 80, 378, 467, 479, 579
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 8 cut(s) 79, 114, 199, 352, 380, 572, 641, 678
Mph1103I ATGCAT 4 cut(s) 283, 353, 627, 766
MseI TTAA 2 cut(s) 182, 336
MslI CAYNNNNRTG 1 cut(s) 659
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 384
Mva1269I GAATGC 1 cut(s) 627
MvaI CCWGG 1 cut(s) 384
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 291
NdeI CATATG 1 cut(s) 627
NdeII GATC 6 cut(s) 58, 123, 188, 233, 475, 602
NlaIII CATG 7 cut(s) 41, 285, 305, 398, 501, 658, 764
NlaIV GGNNCC 1 cut(s) 633
NmuCI GTSAC 2 cut(s) 409, 802
NruI TCGCGA 1 cut(s) 213
NsiI ATGCAT 4 cut(s) 283, 353, 627, 766
NspI RCATGY 3 cut(s) 285, 501, 764
NspV TTCGAA 1 cut(s) 577
PaeI GCATGC 3 cut(s) 285, 501, 764
PagI TCATGA 1 cut(s) 394
PctI GAATGC 1 cut(s) 627
PfeI GAWTC 4 cut(s) 101, 137, 306, 701
PfoI TCCNGGA 1 cut(s) 382
PkrI GCNGC 3 cut(s) 201, 595, 787
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Ppu21I YACGTR 1 cut(s) 807
Psp6I CCWGG 1 cut(s) 382
PspGI CCWGG 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 633
PspPI GGNCC 2 cut(s) 363, 632
PsuI RGATCY 1 cut(s) 123
RruI TCGCGA 1 cut(s) 213
RsaI GTAC 3 cut(s) 131, 401, 509
RsaNI GTAC 3 cut(s) 130, 400, 508
RseI CAYNNNNRTG 1 cut(s) 659
SaqAI TTAA 2 cut(s) 182, 336
SatI GCNGC 3 cut(s) 200, 594, 786
Sau3AI GATC 6 cut(s) 58, 123, 188, 233, 475, 602
Sau96I GGNCC 2 cut(s) 363, 632
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 384
SfaNI GCATC 5 cut(s) 97, 248, 268, 580, 773
SfcI CTRYAG 1 cut(s) 795
SfuI TTCGAA 1 cut(s) 577
SinI GGWCC 2 cut(s) 363, 632
SmiMI CAYNNNNRTG 1 cut(s) 659
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
SphI GCATGC 3 cut(s) 285, 501, 764
Sse9I AATT 7 cut(s) 43, 64, 80, 378, 467, 479, 579
SsiI CCGC 1 cut(s) 199
StyD4I CCNGG 1 cut(s) 382
TaaI ACNGT 1 cut(s) 796
TaiI ACGT 3 cut(s) 425, 732, 809
TaqI TCGA 5 cut(s) 84, 256, 405, 483, 577
TasI AATT 7 cut(s) 43, 64, 80, 378, 467, 479, 579
TatI WGTACW 2 cut(s) 129, 399
TauI GCSGC 1 cut(s) 202
TfiI GAWTC 4 cut(s) 101, 137, 306, 701
Tru1I TTAA 2 cut(s) 182, 336
Tru9I TTAA 2 cut(s) 182, 336
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 2 cut(s) 409, 802
TseI GCWGC 2 cut(s) 593, 785
Tsp45I GTSAC 2 cut(s) 409, 802
TspDTI ATGAA 7 cut(s) 54, 66, 93, 623, 643, 677, 735
TspGWI ACGGA 1 cut(s) 624
TspRI CASTG 1 cut(s) 418
VpaK11BI GGWCC 2 cut(s) 363, 632
XapI RAATTY 4 cut(s) 43, 80, 378, 467
XceI RCATGY 3 cut(s) 285, 501, 764
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
Zsp2I ATGCAT 4 cut(s) 283, 353, 627, 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.