FvH4_1g26013

TPR and ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0021010
Physical Location & Seq
Reverse (-)
17928601 .. 17930556
1956 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26013.t1

Sequence Viewer

Length: 666 bp
ATGAACGATGGCCACATTTGTCATTTCCTAGCTAATGCACGATGTTATTTTCTACTATCTCATGGGCGTGAACCCGTGTGGGAAGTGACGTGGTTTTTTGTGTTAGATGAGGCTTGCGTGGTGGTTAAGGTGGAGGTGAAGGAGGAGGCTGCCAACATATGGTGGCTATGCAATTATAAGAGTGTGAATCAACAATACCCCTTCACGAAGCATGTTGGTCTTGCTGGTGATGAATGCCAGTTACCAGCTATAGACAAGAGCATTGTATCTAATGAAGATGCTTTTGCAAGAAGCTTGTTTGAGAGGTTAAGTTGCATTGTTGTCGTCGTAAGAGAGCACGGCGCCGCCGCCGGTACCTATGCCATCGTGTCAAACCATCAGCAAGGAATATCACGATTTTCACCAACCAGCCAGAAACACGATCACAACCATCAACAACTGCTGCAAGTCCAGACCAAGAGGAAAAGAGAGACTAAGAAGCACGGAAGCGTCAGTCTACTTGCGATTCCCGTTTCCGAAGTGGAAGCGCGTTGGAAGCGTCAAGAAACGGTTGGAAGTGCGCTTCCAGAAAAAATGGATTTCAAAGCGCGACGGAAGCACAAGCTTCTTATATGGAAGCGCAACCGGAATCGAAATAGTGGCAAACGACTGATTTCACGCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA_11 AAA_12 AAA_19 UvrD-helicase

Protein Analysis

222

Amino Acids

25.46

Weight (kDa)

9.61

Isoelectric Point (pI)

52.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021010)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26013 FvH4_1g28411 FvH4_3g30130 FvH4_5g03070 FvH4_6g06532

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
Acc65I GGTACC 1 cut(s) 353
AccB1I GGYRCC 2 cut(s) 341, 353
AccB7I CCANNNNNTGG 1 cut(s) 159
AccI GTMKAC 1 cut(s) 496
AccII CGCG 2 cut(s) 529, 589
AciI CCGC 2 cut(s) 345, 348
AcoI YGGCCR 1 cut(s) 10
AcyI GRCGYC 1 cut(s) 342
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 1 cut(s) 583
AjiI CACGTC 1 cut(s) 90
AleI CACNNNNGTG 1 cut(s) 661
AluBI AGCT 4 cut(s) 32, 248, 294, 604
AluI AGCT 4 cut(s) 32, 248, 294, 604
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 1 cut(s) 464
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 149, 442
Asp718I GGTACC 1 cut(s) 353
AspLEI GCGC 5 cut(s) 344, 529, 562, 589, 621
AsuHPI GGTGA 3 cut(s) 148, 239, 393
BalI TGGCCA 1 cut(s) 12
BanI GGYRCC 2 cut(s) 341, 353
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 136, 429
BccI CCATC 4 cut(s) 2, 371, 384, 438
BceAI ACGGC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BcoDI GTCTC 1 cut(s) 464
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 249
BfoI RGCGCY 1 cut(s) 345
BisI GCNGC 4 cut(s) 150, 345, 348, 443
BlsI GCNGC 4 cut(s) 151, 346, 349, 444
BmgBI CACGTC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 343, 355
BmsI GCATC 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 624
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 136, 429
Bsh1236I CGCG 2 cut(s) 529, 589
BshFI GGCC 1 cut(s) 12
BshNI GGYRCC 2 cut(s) 341, 353
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 2 cut(s) 351, 625
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 464
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 1 cut(s) 421
BspACI CCGC 2 cut(s) 345, 348
BspANI GGCC 1 cut(s) 12
BspFNI CGCG 2 cut(s) 529, 589
BspLI GGNNCC 2 cut(s) 343, 355
BspT107I GGYRCC 2 cut(s) 341, 353
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 350
BssMI GATC 1 cut(s) 421
BssNI GRCGYC 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 550
BstACI GRCGYC 1 cut(s) 342
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 1 cut(s) 474
BstFNI CGCG 2 cut(s) 529, 589
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 5 cut(s) 344, 529, 562, 589, 621
BstKTI GATC 1 cut(s) 424
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 1 cut(s) 421
BstMWI GCNNNNNNNGC 2 cut(s) 535, 595
BstNSI RCATGY 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 249
BstUI CGCG 2 cut(s) 529, 589
BstV1I GCAGC 2 cut(s) 136, 429
BsuRI GGCC 1 cut(s) 12
BtrI CACGTC 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 115
CfoI GCGC 5 cut(s) 344, 529, 562, 589, 621
Cfr10I RCCGGY 1 cut(s) 350
CseI GACGC 2 cut(s) 478, 527
Csp6I GTAC 1 cut(s) 354
CviAII CATG 2 cut(s) 62, 212
CviJI RGCY 9 cut(s) 12, 32, 113, 149, 166, 248, 294, 411, 604
CviKI_1 RGCY 9 cut(s) 12, 32, 113, 149, 166, 248, 294, 411, 604
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 1 cut(s) 474
DinI GGCGCC 1 cut(s) 343
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 10
EgeI GGCGCC 1 cut(s) 343
EheI GGCGCC 1 cut(s) 343
FaeI CATG 2 cut(s) 65, 215
FatI CATG 2 cut(s) 61, 211
FauNDI CATATG 1 cut(s) 158
FblI GTMKAC 1 cut(s) 496
Fnu4HI GCNGC 4 cut(s) 150, 345, 348, 443
Fsp4HI GCNGC 4 cut(s) 150, 345, 348, 443
FspBI CTAG 1 cut(s) 29
GlaI GCGC 5 cut(s) 343, 528, 561, 588, 620
GluI GCNGC 4 cut(s) 150, 345, 348, 443
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 1 cut(s) 12
HapII CCGG 2 cut(s) 351, 625
HgaI GACGC 2 cut(s) 478, 527
HhaI GCGC 5 cut(s) 344, 529, 562, 589, 621
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 2 cut(s) 65, 215
Hin6I GCGC 5 cut(s) 342, 527, 560, 587, 619
HinP1I GCGC 5 cut(s) 342, 527, 560, 587, 619
HindIII AAGCTT 2 cut(s) 292, 602
HinfI GANTC 3 cut(s) 187, 505, 628
HpaII CCGG 2 cut(s) 351, 625
HphI GGTGA 3 cut(s) 148, 239, 393
Hpy166II GTNNAC 2 cut(s) 71, 497
Hpy188I TCNGA 1 cut(s) 517
Hpy188III TCNNGA 5 cut(s) 205, 393, 451, 542, 566
Hpy8I GTNNAC 2 cut(s) 71, 497
Hpy99I CGWCG 2 cut(s) 329, 594
HpyAV CCTTC 2 cut(s) 133, 211
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 5 cut(s) 38, 171, 287, 315, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 535, 595
HpyF3I CTNAG 1 cut(s) 474
HpySE526I ACGT 1 cut(s) 89
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 2 cut(s) 65, 215
HspAI GCGC 5 cut(s) 342, 527, 560, 587, 619
KasI GGCGCC 1 cut(s) 341
KpnI GGTACC 1 cut(s) 357
Kzo9I GATC 1 cut(s) 421
LpnPI CCDG 9 cut(s) 210, 251, 258, 364, 421, 425, 464, 579, 638
Lsp1109I GCAGC 2 cut(s) 136, 429
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 29
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 2 cut(s) 85, 240
MalI GATC 1 cut(s) 423
MboI GATC 1 cut(s) 421
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 339
MlsI TGGCCA 1 cut(s) 12
MluCI AATT 1 cut(s) 172
MluNI TGGCCA 1 cut(s) 12
Mly113I GGCGCC 1 cut(s) 342
MmeI TCCRAC 2 cut(s) 512, 532
MnlI CCTC 6 cut(s) 103, 127, 136, 139, 297, 453
Mox20I TGGCCA 1 cut(s) 12
MscI TGGCCA 1 cut(s) 12
MseI TTAA 2 cut(s) 126, 308
MslI CAYNNNNRTG 2 cut(s) 66, 661
Msp20I TGGCCA 1 cut(s) 12
MspI CCGG 2 cut(s) 351, 625
Mva1269I GAATGC 1 cut(s) 239
MvnI CGCG 2 cut(s) 529, 589
MwoI GCNNNNNNNGC 2 cut(s) 535, 595
NarI GGCGCC 1 cut(s) 342
NdeI CATATG 1 cut(s) 158
NdeII GATC 1 cut(s) 421
NlaIII CATG 2 cut(s) 65, 215
NlaIV GGNNCC 2 cut(s) 343, 355
NmuCI GTSAC 1 cut(s) 85
NspI RCATGY 1 cut(s) 215
OliI CACNNNNGTG 1 cut(s) 661
PctI GAATGC 1 cut(s) 239
PfeI GAWTC 3 cut(s) 187, 505, 628
PflMI CCANNNNNTGG 1 cut(s) 159
PkrI GCNGC 4 cut(s) 151, 346, 349, 444
PluTI GGCGCC 1 cut(s) 345
PsiI TTATAA 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 343, 355
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
RseI CAYNNNNRTG 2 cut(s) 66, 661
SaqAI TTAA 2 cut(s) 126, 308
SatI GCNGC 4 cut(s) 150, 345, 348, 443
Sau3AI GATC 1 cut(s) 421
SduI GDGCHC 1 cut(s) 339
SetI ASST 9 cut(s) 34, 92, 132, 138, 250, 296, 308, 359, 606
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 249
SfoI GGCGCC 1 cut(s) 343
SmiMI CAYNNNNRTG 2 cut(s) 66, 661
Sse9I AATT 1 cut(s) 172
SsiI CCGC 2 cut(s) 345, 348
SspDI GGCGCC 1 cut(s) 341
SspMI CTAG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 550
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 631
TasI AATT 1 cut(s) 172
TauI GCSGC 2 cut(s) 347, 350
TfiI GAWTC 3 cut(s) 187, 505, 628
Tru1I TTAA 2 cut(s) 126, 308
Tru9I TTAA 2 cut(s) 126, 308
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 2 cut(s) 149, 442
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 17, 246, 288
TspGWI ACGGA 2 cut(s) 498, 607
Van91I CCANNNNNTGG 1 cut(s) 159
XceI RCATGY 1 cut(s) 215
XmiI GTMKAC 1 cut(s) 496
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.