Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0021010

Physical Location & Seq

Genomic Coordinates Reverse (-)

3833060 .. 3834553

Gene Structure 1494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06532.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGAAAAGACGGTTGCACGTAGAGTAAAGACTTTAAGGGACTTAAGAAAATCATCCTCCGCGGTGTTTTGCTTCACTCTCATCATCGGAAACATAAAAGCTAGGAAGCACGGAAGCGCGCCAGGGGTCACGTTTCGCGCTTCGGAAGCGGAAGCGCGCCGGAAGCGCGCGGAAGCGCACGGAAGCGCGATTCCGGAAATTCAAAACAAAACCTTCTTATGCTCTCGGTCAAGGCCTTCCTCCATCTCCTCCGTCTCCTTCTTTTTCACACCCATCTTCTCTGACTACGAACCTCCATCTTTCTCTCTCGGACTCGATTTCGGGTTCGAATCGGAGCTCCAAACAGCTCCTCCGCCCAGCTCCACTCCTCCGCTTCCGGTGGACACTGATCTCGATCAAGTCCCTGAGCCGCAGATCGAGCCGCCGCGGGCGCTCAAGCGGCTGAAGCGAGGCCTGCCAGAGAAGCGGGAGCTCCCGACGACGCCGTTTTGGAGCGTTGAAGACGACATCGAAGAGTTCTCTTCTCCCGAAGATACTGTTCAAGGTAATTTCTTTTTCTCTTCAATTTTGTGGATTTCGGATTATTGGTGTTTGGGTGGGAATGAGGTTTTGGAATTTATGCGCATAAGCAAGCAGGCAGGTCAACTTTGGGGAACCCCTGGTTGTGCTTTAGTTGCAGTTGATTGTTGTTTTCAGATTGTGAGTGACGTTATAGTGTTTGCAGTGCTGTTGGAGTGCTGCCCTTGTCTCTTCAATATGGGTTTTCACTCGTTGAAAAGTATGTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

264

Amino Acids

29.38

Weight (kDa)

5.74

Isoelectric Point (pI)

59.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021010)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26013 FvH4_1g28411 FvH4_3g30130 FvH4_5g03070 FvH4_6g06532

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	623
Acc36I	ACCTGC	1 cut(s)	629
AccII	CGCG	8 cut(s)	62, 119, 138, 157, 168, 170, 188, 427
AccIII	TCCGGA	1 cut(s)	193
AcsI	RAATTY	2 cut(s)	198, 614
AcuI	CTGAAG	1 cut(s)	464
AcyI	GRCGYC	1 cut(s)	482
AflII	CTTAAG	1 cut(s)	43
AgsI	TTSAA	6 cut(s)	203, 500, 542, 564, 754, 775
AjnI	CCWGG	2 cut(s)	121, 658
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
AluBI	AGCT	5 cut(s)	101, 337, 347, 360, 472
AluI	AGCT	5 cut(s)	101, 337, 347, 360, 472
Alw21I	GWGCWC	2 cut(s)	339, 474
Alw26I	GTCTC	2 cut(s)	259, 752
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	2 cut(s)	233, 451
ApeKI	GCWGC	1 cut(s)	738
ApoI	RAATTY	2 cut(s)	198, 614
AsuII	TTCGAA	1 cut(s)	327
BanII	GRGCYC	2 cut(s)	339, 474
BbsI	GAAGAC	1 cut(s)	507
Bbv12I	GWGCWC	2 cut(s)	339, 474
BbvI	GCAGC	1 cut(s)	725
BccI	CCATC	3 cut(s)	251, 281, 304
BceAI	ACGGC	1 cut(s)	469
BciT130I	CCWGG	2 cut(s)	123, 660
BcoDI	GTCTC	2 cut(s)	259, 752
BfaI	CTAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	434
BfrI	CTTAAG	1 cut(s)	43
BfuAI	ACCTGC	1 cut(s)	629
BisI	GCNGC	5 cut(s)	410, 422, 425, 440, 739
BlsI	GCNGC	5 cut(s)	411, 423, 426, 441, 740
Bme1390I	CCNGG	2 cut(s)	123, 660
BmiI	GGNNCC	1 cut(s)	655
BmrFI	CCNGG	2 cut(s)	123, 660
BpiI	GAAGAC	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	419
BsaAI	YACGTR	1 cut(s)	20
BsaBI	GATNNNNATC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	482
BsaJI	CCNNGG	4 cut(s)	60, 122, 425, 658
BsaWI	WCCGGW	2 cut(s)	193, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bse8I	GATNNNNATC	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	193
BseBI	CCWGG	2 cut(s)	123, 660
BseDI	CCNNGG	4 cut(s)	60, 122, 425, 658
BseGI	GGATG	1 cut(s)	53
BseJI	GATNNNNATC	1 cut(s)	393
BseMII	CTCAG	1 cut(s)	396
BsePI	GCGCGC	3 cut(s)	117, 155, 166
BseRI	GAGGAG	3 cut(s)	238, 339, 357
BseXI	GCAGC	1 cut(s)	725
BseYI	CCCAGC	1 cut(s)	356
Bsh1236I	CGCG	8 cut(s)	62, 119, 138, 157, 168, 170, 188, 427
BshFI	GGCC	2 cut(s)	235, 453
BsiHKAI	GWGCWC	2 cut(s)	339, 474
BsiSI	CCGG	3 cut(s)	160, 194, 377
BslFI	GGGAC	2 cut(s)	53, 386
BsmAI	GTCTC	2 cut(s)	259, 752
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	53, 386
BsnI	GGCC	2 cut(s)	235, 453
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	339, 474
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	388, 394, 414
BspANI	GGCC	2 cut(s)	235, 453
BspCNI	CTCAG	1 cut(s)	397
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	8 cut(s)	62, 119, 138, 157, 168, 170, 188, 427
BspLI	GGNNCC	1 cut(s)	655
BspMI	ACCTGC	1 cut(s)	629
BspT104I	TTCGAA	1 cut(s)	327
BspTI	CTTAAG	1 cut(s)	43
BssECI	CCNNGG	4 cut(s)	60, 122, 425, 658
BssHII	GCGCGC	3 cut(s)	117, 155, 166
BssMI	GATC	3 cut(s)	388, 394, 414
BssNI	GRCGYC	1 cut(s)	482
Bst2UI	CCWGG	2 cut(s)	123, 660
Bst4CI	ACNGT	2 cut(s)	13, 538
Bst6I	CTCTTC	4 cut(s)	507, 526, 565, 755
BstACI	GRCGYC	1 cut(s)	482
BstAFI	CTTAAG	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	327
BstC8I	GCNNGC	7 cut(s)	119, 157, 168, 429, 455, 632, 636
BstDEI	CTNAG	1 cut(s)	405
BstDSI	CCRYGG	2 cut(s)	60, 425
BstF5I	GGATG	1 cut(s)	53
BstFNI	CGCG	8 cut(s)	62, 119, 138, 157, 168, 170, 188, 427
BstH2I	RGCGCY	1 cut(s)	434
BstKTI	GATC	3 cut(s)	391, 397, 417
BstMAI	GTCTC	2 cut(s)	259, 752
BstMBI	GATC	3 cut(s)	388, 394, 414
BstNI	CCWGG	2 cut(s)	123, 660
BstSCI	CCNGG	2 cut(s)	121, 658
BstUI	CGCG	8 cut(s)	62, 119, 138, 157, 168, 170, 188, 427
BstV1I	GCAGC	1 cut(s)	725
BstV2I	GAAGAC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	235, 453
BtgI	CCRYGG	2 cut(s)	60, 425
BtsCI	GGATG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	729
BtsIMutI	CAGTG	2 cut(s)	384, 729
BveI	ACCTGC	1 cut(s)	629
Cac8I	GCNNGC	7 cut(s)	119, 157, 168, 429, 455, 632, 636
Cfr42I	CCGCGG	2 cut(s)	63, 428
CseI	GACGC	1 cut(s)	490
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	3 cut(s)	390, 396, 416
DpnII	GATC	3 cut(s)	388, 394, 414
Eam1104I	CTCTTC	4 cut(s)	507, 526, 565, 755
EarI	CTCTTC	4 cut(s)	507, 526, 565, 755
EciI	GGCGGA	1 cut(s)	342
Ecl136II	GAGCTC	2 cut(s)	337, 472
Eco147I	AGGCCT	2 cut(s)	235, 453
Eco24I	GRGCYC	2 cut(s)	339, 474
Eco53kI	GAGCTC	2 cut(s)	337, 472
Eco57I	CTGAAG	1 cut(s)	464
EcoICRI	GAGCTC	2 cut(s)	337, 472
EcoRII	CCWGG	2 cut(s)	121, 658
EcoT38I	GRGCYC	2 cut(s)	339, 474
Esp3I	CGTCTC	1 cut(s)	259
FaiI	YATR	7 cut(s)	95, 220, 620, 626, 713, 758, 782
FaqI	GGGAC	2 cut(s)	53, 386
FauI	CCCGC	2 cut(s)	420, 459
Fnu4HI	GCNGC	5 cut(s)	410, 422, 425, 440, 739
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	2 cut(s)	339, 474
Fsp4HI	GCNGC	5 cut(s)	410, 422, 425, 440, 739
FspAI	RTGCGCAY	1 cut(s)	623
FspBI	CTAG	1 cut(s)	102
FspI	TGCGCA	1 cut(s)	623
GluI	GCNGC	5 cut(s)	410, 422, 425, 440, 739
GsaI	CCCAGC	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	2 cut(s)	235, 453
HapII	CCGG	3 cut(s)	160, 194, 377
HgaI	GACGC	1 cut(s)	490
Hin1I	GRCGYC	1 cut(s)	482
HincII	GTYRAC	1 cut(s)	644
HindII	GTYRAC	1 cut(s)	644
HinfI	GANTC	3 cut(s)	190, 312, 329
HpaII	CCGG	3 cut(s)	160, 194, 377
Hpy166II	GTNNAC	2 cut(s)	382, 644
Hpy188I	TCNGA	7 cut(s)	89, 145, 283, 311, 334, 580, 696
Hpy188III	TCNNGA	4 cut(s)	194, 392, 475, 527
Hpy8I	GTNNAC	2 cut(s)	382, 644
Hpy99I	CGWCG	2 cut(s)	481, 484
HpyAV	CCTTC	3 cut(s)	223, 246, 268
HpyCH4III	ACNGT	2 cut(s)	13, 538
HpyCH4IV	ACGT	3 cut(s)	19, 131, 708
HpyCH4V	TGCA	3 cut(s)	17, 677, 722
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	3 cut(s)	19, 131, 708
Hsp92I	GRCGYC	1 cut(s)	482
Kpn2I	TCCGGA	1 cut(s)	193
KspI	CCGCGG	2 cut(s)	63, 428
Kzo9I	GATC	3 cut(s)	388, 394, 414
LmnI	GCTCC	7 cut(s)	334, 342, 352, 365, 469, 477, 492
Lsp1109I	GCAGC	1 cut(s)	725
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	3 cut(s)	19, 131, 708
MaeIII	GTNAC	2 cut(s)	127, 704
MalI	GATC	3 cut(s)	390, 396, 416
MboI	GATC	3 cut(s)	388, 394, 414
MboII	GAAGA	8 cut(s)	268, 512, 513, 524, 542, 552, 742, 778
MhlI	GDGCHC	2 cut(s)	339, 474
MluCI	AATT	4 cut(s)	198, 547, 564, 614
MlyI	GAGTC	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	711
MnlI	CCTC	8 cut(s)	67, 250, 259, 303, 360, 378, 443, 598
MroI	TCCGGA	1 cut(s)	193
MseI	TTAA	2 cut(s)	35, 44
MspA1I	CMGCKG	2 cut(s)	62, 427
MspCI	CTTAAG	1 cut(s)	43
MspI	CCGG	3 cut(s)	160, 194, 377
MspR9I	CCNGG	2 cut(s)	123, 660
MvaI	CCWGG	2 cut(s)	123, 660
MvnI	CGCG	8 cut(s)	62, 119, 138, 157, 168, 170, 188, 427
NdeII	GATC	3 cut(s)	388, 394, 414
NlaIV	GGNNCC	1 cut(s)	655
NmuCI	GTSAC	2 cut(s)	127, 704
NsbI	TGCGCA	1 cut(s)	623
NspV	TTCGAA	1 cut(s)	327
PauI	GCGCGC	3 cut(s)	117, 155, 166
PceI	AGGCCT	2 cut(s)	235, 453
PfeI	GAWTC	2 cut(s)	190, 329
PkrI	GCNGC	5 cut(s)	411, 423, 426, 441, 740
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Ppu21I	YACGTR	1 cut(s)	20
Psp124BI	GAGCTC	2 cut(s)	339, 474
Psp6I	CCWGG	2 cut(s)	121, 658
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	2 cut(s)	121, 658
PspN4I	GGNNCC	1 cut(s)	655
PteI	GCGCGC	3 cut(s)	117, 155, 166
SacI	GAGCTC	2 cut(s)	339, 474
SacII	CCGCGG	2 cut(s)	63, 428
SaqAI	TTAA	2 cut(s)	35, 44
SatI	GCNGC	5 cut(s)	410, 422, 425, 440, 739
Sau3AI	GATC	3 cut(s)	388, 394, 414
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	2 cut(s)	123, 660
SduI	GDGCHC	2 cut(s)	339, 474
Sfr303I	CCGCGG	2 cut(s)	63, 428
SfuI	TTCGAA	1 cut(s)	327
SgrBI	CCGCGG	2 cut(s)	63, 428
SmlI	CTYRAG	2 cut(s)	43, 434
SmoI	CTYRAG	2 cut(s)	43, 434
Sse9I	AATT	4 cut(s)	198, 547, 564, 614
SseBI	AGGCCT	2 cut(s)	235, 453
SspMI	CTAG	1 cut(s)	102
SstI	GAGCTC	2 cut(s)	339, 474
StuI	AGGCCT	2 cut(s)	235, 453
StyD4I	CCNGG	2 cut(s)	121, 658
TaaI	ACNGT	2 cut(s)	13, 538
TaiI	ACGT	3 cut(s)	22, 134, 711
TaqI	TCGA	5 cut(s)	315, 327, 393, 417, 510
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	4 cut(s)	198, 547, 564, 614
TauI	GCSGC	4 cut(s)	412, 424, 427, 442
TfiI	GAWTC	2 cut(s)	190, 329
Tru1I	TTAA	2 cut(s)	35, 44
Tru9I	TTAA	2 cut(s)	35, 44
TscAI	CASTG	2 cut(s)	391, 729
TseFI	GTSAC	2 cut(s)	127, 704
TseI	GCWGC	1 cut(s)	738
Tsp45I	GTSAC	2 cut(s)	127, 704
TspGWI	ACGGA	3 cut(s)	126, 195, 241
TspRI	CASTG	2 cut(s)	391, 729
Vha464I	CTTAAG	1 cut(s)	43
XapI	RAATTY	2 cut(s)	198, 614
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.