FvH4_3g30130

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
23355190 .. 23356239
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30130.t1

Sequence Viewer

Length: 264 bp
ATGGAGACGAAGAGGAGGAGGAGGAGGACGGTGACGGAAGGAAACGGAGAAAAAGTGGTCGTCAGTGTTGAAAAGCGAAATTTTCTCATTAATGATACAAATGCTGAGGTGGAGAAGCACGGAAGCGCCGGGATGGTCACGCTTCGCGCTTCTGAAGCGGAAGCGCCGTGGAAGCGCGGGGAATCATCTGGAAGCGCGATTCTGGGAAAAATGGGGTTTCTGAAGCGCGGCGGAAGCGTCCGATTCCGATATGGAAGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.58

Weight (kDa)

10.65

Isoelectric Point (pI)

53.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021010)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 147, 177, 197, 228
AciI CCGC 4 cut(s) 158, 177, 228, 231
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 2 cut(s) 174, 242
AgsI TTSAA 1 cut(s) 71
ApoI RAATTY 1 cut(s) 79
AseI ATTAAT 1 cut(s) 90
AspLEI GCGC 7 cut(s) 128, 149, 166, 177, 197, 228, 260
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 1 cut(s) 43
BbvCI CCTCAGC 1 cut(s) 105
BccI CCATC 1 cut(s) 127
BceAI ACGGC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 130
BfoI RGCGCY 2 cut(s) 129, 167
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 130
BmrFI CCNGG 1 cut(s) 130
Bpu10I CCTNAGC 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 96
BseRI GAGGAG 4 cut(s) 28, 31, 34, 37
Bsh1236I CGCG 4 cut(s) 147, 177, 197, 228
BsiSI CCGG 1 cut(s) 129
BspACI CCGC 4 cut(s) 158, 177, 228, 231
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 4 cut(s) 147, 177, 197, 228
BssECI CCNNGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 138
BstFNI CGCG 4 cut(s) 147, 177, 197, 228
BstH2I RGCGCY 2 cut(s) 129, 167
BstHHI GCGC 7 cut(s) 128, 149, 166, 177, 197, 228, 260
BstMWI GCNNNNNNNGC 3 cut(s) 155, 172, 234
BstSCI CCNGG 1 cut(s) 128
BstUI CGCG 4 cut(s) 147, 177, 197, 228
BtgI CCRYGG 1 cut(s) 167
BtsCI GGATG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 70
CfoI GCGC 7 cut(s) 128, 149, 166, 177, 197, 228, 260
CseI GACGC 1 cut(s) 226
CviAII CATG 1 cut(s) 261
DdeI CTNAG 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 5
EarI CTCTTC 1 cut(s) 5
EciI GGCGGA 1 cut(s) 246
Eco57I CTGAAG 2 cut(s) 174, 242
FaeI CATG 1 cut(s) 264
FaiI YATR 2 cut(s) 252, 262
FatI CATG 1 cut(s) 260
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 229
GlaI GCGC 7 cut(s) 127, 148, 165, 176, 196, 227, 259
GluI GCNGC 1 cut(s) 229
HaeII RGCGCY 2 cut(s) 129, 167
HapII CCGG 1 cut(s) 129
HgaI GACGC 1 cut(s) 226
HhaI GCGC 7 cut(s) 128, 149, 166, 177, 197, 228, 260
Hin1II CATG 1 cut(s) 264
Hin6I GCGC 7 cut(s) 126, 147, 164, 175, 195, 226, 258
HinP1I GCGC 7 cut(s) 126, 147, 164, 175, 195, 226, 258
HinfI GANTC 3 cut(s) 182, 199, 243
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 4 cut(s) 154, 222, 242, 248
Hpy188III TCNNGA 1 cut(s) 189
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 172, 234
HpyF3I CTNAG 1 cut(s) 105
Hsp92II CATG 1 cut(s) 264
HspAI GCGC 7 cut(s) 126, 147, 164, 175, 195, 226, 258
LpnPI CCDG 3 cut(s) 142, 174, 188
MaeIII GTNAC 2 cut(s) 31, 136
MboII GAAGA 1 cut(s) 22
MluCI AATT 1 cut(s) 79
MnlI CCTC 6 cut(s) 6, 9, 12, 15, 18, 100
MseI TTAA 1 cut(s) 90
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 130
MvnI CGCG 4 cut(s) 147, 177, 197, 228
MwoI GCNNNNNNNGC 3 cut(s) 155, 172, 234
NciI CCSGG 1 cut(s) 130
NlaIII CATG 1 cut(s) 264
NmuCI GTSAC 2 cut(s) 31, 136
PfeI GAWTC 3 cut(s) 182, 199, 243
PkrI GCNGC 1 cut(s) 230
PshBI ATTAAT 1 cut(s) 90
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 130
SetI ASST 1 cut(s) 111
Sse9I AATT 1 cut(s) 79
SsiI CCGC 4 cut(s) 158, 177, 228, 231
StyD4I CCNGG 1 cut(s) 128
TaaI ACNGT 1 cut(s) 31
TasI AATT 1 cut(s) 79
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 3 cut(s) 182, 199, 243
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 2 cut(s) 31, 136
Tsp45I GTSAC 2 cut(s) 31, 136
TspGWI ACGGA 3 cut(s) 50, 60, 135
TspRI CASTG 1 cut(s) 70
VspI ATTAAT 1 cut(s) 90
XapI RAATTY 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.