Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0021010

Physical Location & Seq

Genomic Coordinates Forward (+)

20295004 .. 20299179

Gene Structure 4176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28411.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAGTAATTACGTGGATAGCCACATAGATTATAATATTTATAACCTAGGAAGCACGGAAGCGCGCCAGGGGTCACGTTTCGCGCTTCGGAAGCGGAAGCGCGCCGGAAGCGCGCGGAAGCGCACGGAAGCGCGATTCCGGAAATTGTCTGGTTGGAAATGCGGCGGAAGCGCGCGCTTCCAGATTGGAAGCTTCGCCCTAGAAAATAACACGGAAGCCTCCACTCCTCCGCTTCCGGTGGACACTGATCTCGATCAAGTCCCCGAGCCGCAGATCGAGCCGCCGCGGGCGCTCAAGCGGCTGAAGCGAGGCCTGCCGGAGAAGCGGGAGCTCCCGACGACGCCGTTTTGGAGCGTTGAAGACGACATCGAAGAGTTCTCTTCTCCCGAAGATACTGTTCAAGGTCAACTTTGGGGAACCCCTGGTTGTGCTTTAGTTGCAGTTGATTGTTGTTTTCAGATTGTGAGTGACGTTATAGTGTTTGCAGTGCTGTTGGAGTGCTGCCCTTGTCTCTTCAATATGGGTTTTCACTCGTTGAAAAGGGAAGCCAATGTGGATGACAAAGCTCCTTTGTGGATTTTTACCAATAAGATTGAAAAGTTGCCAGGAGGAGGATCTTGGAGAATGAAAGACTCTTACAAAGAAGGTCCGAGTCAAATGTGGGATTTGGGAGGTGATCAATTTGATTCATTGGATGAAAGTAACCTTGGCAGGCTTGAGTTTGAGGACCTTTCTGTTGATGAGCCATCGCTGGAGGGTGTTTTGTTTGACAATGTTCATGAGGGCGAGGATGTAGATGATGATGACCTTGATGTTGATGATCATGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

278

Amino Acids

31.12

Weight (kDa)

4.55

Isoelectric Point (pI)

52.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021010)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26013 FvH4_1g28411 FvH4_3g30130 FvH4_5g03070 FvH4_6g06532

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	33, 42
AccII	CGCG	9 cut(s)	64, 83, 102, 113, 115, 133, 173, 175, 286
AccIII	TCCGGA	1 cut(s)	138
AclWI	GGATC	1 cut(s)	622
AcuI	CTGAAG	1 cut(s)	323
AcyI	GRCGYC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	611
AgsI	TTSAA	5 cut(s)	359, 401, 517, 538, 596
AjnI	CCWGG	3 cut(s)	66, 421, 604
AjuI	GAANNNNNNNTTGG	2 cut(s)	690, 722
AluBI	AGCT	3 cut(s)	192, 331, 566
AluI	AGCT	3 cut(s)	192, 331, 566
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	515
AlwI	GGATC	1 cut(s)	622
Ama87I	CYCGRG	1 cut(s)	263
Aor13HI	TCCGGA	1 cut(s)	138
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	501
AspA2I	CCTAGG	1 cut(s)	46
AspS9I	GGNCC	2 cut(s)	647, 727
AsuHPI	GGTGA	1 cut(s)	686
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	2 cut(s)	647, 727
AvrII	CCTAGG	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	333
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	488
BccI	CCATC	1 cut(s)	754
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	3 cut(s)	68, 423, 606
BclI	TGATCA	2 cut(s)	676, 820
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	2 cut(s)	47, 200
BfoI	RGCGCY	1 cut(s)	293
BisI	GCNGC	6 cut(s)	163, 269, 281, 284, 299, 502
BlnI	CCTAGG	1 cut(s)	46
BlsI	GCNGC	6 cut(s)	164, 270, 282, 285, 300, 503
Bme1390I	CCNGG	3 cut(s)	68, 423, 606
Bme18I	GGWCC	2 cut(s)	647, 727
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	647, 727
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	3 cut(s)	68, 423, 606
BpiI	GAAGAC	1 cut(s)	366
BpmI	CTGGAG	1 cut(s)	773
BpuEI	CTTGAG	2 cut(s)	278, 737
BsaAI	YACGTR	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	252
BsaHI	GRCGYC	1 cut(s)	341
BsaJI	CCNNGG	5 cut(s)	46, 67, 284, 421, 706
BsaWI	WCCGGW	2 cut(s)	138, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	611
Bse8I	GATNNNNATC	1 cut(s)	252
BseAI	TCCGGA	1 cut(s)	138
BseBI	CCWGG	3 cut(s)	68, 423, 606
BseDI	CCNNGG	5 cut(s)	46, 67, 284, 421, 706
BseGI	GGATG	3 cut(s)	562, 700, 796
BseJI	GATNNNNATC	1 cut(s)	252
BseLI	CCNNNNNNNGG	1 cut(s)	611
BsePI	GCGCGC	5 cut(s)	62, 100, 111, 171, 173
BseRI	GAGGAG	2 cut(s)	216, 624
BseXI	GCAGC	1 cut(s)	488
Bsh1236I	CGCG	9 cut(s)	64, 83, 102, 113, 115, 133, 173, 175, 286
BshFI	GGCC	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	4 cut(s)	105, 139, 236, 317
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	611
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	312
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	6 cut(s)	247, 253, 273, 614, 676, 820
BspANI	GGCC	1 cut(s)	312
BspEI	TCCGGA	1 cut(s)	138
BspFNI	CGCG	9 cut(s)	64, 83, 102, 113, 115, 133, 173, 175, 286
BspHI	TCATGA	2 cut(s)	778, 823
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	622
BssECI	CCNNGG	5 cut(s)	46, 67, 284, 421, 706
BssHII	GCGCGC	5 cut(s)	62, 100, 111, 171, 173
BssMI	GATC	6 cut(s)	247, 253, 273, 614, 676, 820
BssNI	GRCGYC	1 cut(s)	341
BssT1I	CCWWGG	2 cut(s)	46, 706
Bst2UI	CCWGG	3 cut(s)	68, 423, 606
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	3 cut(s)	366, 385, 518
BstACI	GRCGYC	1 cut(s)	341
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	8 cut(s)	64, 102, 113, 173, 175, 288, 314, 713
BstDSI	CCRYGG	1 cut(s)	284
BstF5I	GGATG	3 cut(s)	562, 700, 796
BstFNI	CGCG	9 cut(s)	64, 83, 102, 113, 115, 133, 173, 175, 286
BstH2I	RGCGCY	1 cut(s)	293
BstKTI	GATC	6 cut(s)	250, 256, 276, 617, 679, 823
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	6 cut(s)	247, 253, 273, 614, 676, 820
BstNI	CCWGG	3 cut(s)	68, 423, 606
BstSCI	CCNGG	3 cut(s)	66, 421, 604
BstUI	CGCG	9 cut(s)	64, 83, 102, 113, 115, 133, 173, 175, 286
BstV1I	GCAGC	1 cut(s)	488
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	614
BsuRI	GGCC	1 cut(s)	312
BtgI	CCRYGG	1 cut(s)	284
BtgZI	GCGATG	1 cut(s)	732
BtsCI	GGATG	3 cut(s)	562, 700, 796
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	2 cut(s)	243, 492
Cac8I	GCNNGC	8 cut(s)	64, 102, 113, 173, 175, 288, 314, 713
CciI	TCATGA	2 cut(s)	778, 823
Cfr13I	GGNCC	2 cut(s)	647, 727
Cfr42I	CCGCGG	1 cut(s)	287
CseI	GACGC	1 cut(s)	349
CviAII	CATG	2 cut(s)	779, 824
DpnI	GATC	6 cut(s)	249, 255, 275, 616, 678, 822
DpnII	GATC	6 cut(s)	247, 253, 273, 614, 676, 820
Eam1104I	CTCTTC	3 cut(s)	366, 385, 518
EarI	CTCTTC	3 cut(s)	366, 385, 518
EciI	GGCGGA	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	2 cut(s)	46, 706
Eco147I	AGGCCT	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	2 cut(s)	647, 727
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	323
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	727
EcoRII	CCWGG	3 cut(s)	66, 421, 604
EcoT14I	CCWWGG	2 cut(s)	46, 706
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	2 cut(s)	46, 706
FaeI	CATG	2 cut(s)	782, 827
FaiI	YATR	7 cut(s)	26, 33, 42, 476, 521, 780, 825
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	2 cut(s)	778, 823
FauI	CCCGC	2 cut(s)	279, 318
FbaI	TGATCA	2 cut(s)	676, 820
Fnu4HI	GCNGC	6 cut(s)	163, 269, 281, 284, 299, 502
FokI	GGATG	3 cut(s)	569, 707, 803
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	6 cut(s)	163, 269, 281, 284, 299, 502
FspBI	CTAG	2 cut(s)	47, 200
GluI	GCNGC	6 cut(s)	163, 269, 281, 284, 299, 502
GsuI	CTGGAG	1 cut(s)	773
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	4 cut(s)	105, 139, 236, 317
HgaI	GACGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	2 cut(s)	782, 827
HincII	GTYRAC	1 cut(s)	407
HindII	GTYRAC	1 cut(s)	407
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	4 cut(s)	135, 632, 652, 686
HpaII	CCGG	4 cut(s)	105, 139, 236, 317
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	2 cut(s)	241, 407
Hpy188I	TCNGA	3 cut(s)	90, 459, 651
Hpy188III	TCNNGA	7 cut(s)	139, 181, 251, 334, 386, 779, 824
Hpy8I	GTNNAC	2 cut(s)	241, 407
Hpy99I	CGWCG	2 cut(s)	340, 343
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	3 cut(s)	12, 76, 471
HpyCH4V	TGCA	2 cut(s)	440, 485
HpySE526I	ACGT	3 cut(s)	12, 76, 471
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	782, 827
Kpn2I	TCCGGA	1 cut(s)	138
Ksp22I	TGATCA	2 cut(s)	676, 820
KspI	CCGCGG	1 cut(s)	287
Kzo9I	GATC	6 cut(s)	247, 253, 273, 614, 676, 820
LmnI	GCTCC	4 cut(s)	328, 336, 351, 571
Lsp1109I	GCAGC	1 cut(s)	488
MaeI	CTAG	2 cut(s)	47, 200
MaeII	ACGT	3 cut(s)	12, 76, 471
MaeIII	GTNAC	3 cut(s)	72, 467, 701
MalI	GATC	6 cut(s)	249, 255, 275, 616, 678, 822
MboI	GATC	6 cut(s)	247, 253, 273, 614, 676, 820
MboII	GAAGA	5 cut(s)	371, 372, 383, 401, 505
MflI	RGATCY	1 cut(s)	614
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	3 cut(s)	7, 143, 680
MlyI	GAGTC	2 cut(s)	626, 661
MmeI	TCCRAC	2 cut(s)	134, 474
MroI	TCCGGA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	4 cut(s)	105, 139, 236, 317
MspR9I	CCNGG	3 cut(s)	68, 423, 606
MvaI	CCWGG	3 cut(s)	68, 423, 606
MvnI	CGCG	9 cut(s)	64, 83, 102, 113, 115, 133, 173, 175, 286
NdeII	GATC	6 cut(s)	247, 253, 273, 614, 676, 820
NlaIII	CATG	2 cut(s)	782, 827
NlaIV	GGNNCC	1 cut(s)	418
NmuCI	GTSAC	2 cut(s)	72, 467
PagI	TCATGA	2 cut(s)	778, 823
PauI	GCGCGC	5 cut(s)	62, 100, 111, 171, 173
PceI	AGGCCT	1 cut(s)	312
PfeI	GAWTC	2 cut(s)	135, 686
PkrI	GCNGC	6 cut(s)	164, 270, 282, 285, 300, 503
PleI	GAGTC	2 cut(s)	626, 660
PpsI	GAGTC	2 cut(s)	626, 660
Ppu21I	YACGTR	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	727
PsiI	TTATAA	2 cut(s)	33, 42
Psp124BI	GAGCTC	1 cut(s)	333
Psp5II	RGGWCCY	1 cut(s)	727
Psp6I	CCWGG	3 cut(s)	66, 421, 604
PspGI	CCWGG	3 cut(s)	66, 421, 604
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	2 cut(s)	647, 727
PspPPI	RGGWCCY	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	614
PteI	GCGCGC	5 cut(s)	62, 100, 111, 171, 173
SacI	GAGCTC	1 cut(s)	333
SacII	CCGCGG	1 cut(s)	287
SatI	GCNGC	6 cut(s)	163, 269, 281, 284, 299, 502
Sau3AI	GATC	6 cut(s)	247, 253, 273, 614, 676, 820
Sau96I	GGNCC	2 cut(s)	647, 727
SchI	GAGTC	2 cut(s)	626, 661
ScrFI	CCNGG	3 cut(s)	68, 423, 606
SduI	GDGCHC	1 cut(s)	333
Sfr303I	CCGCGG	1 cut(s)	287
SgrBI	CCGCGG	1 cut(s)	287
SinI	GGWCC	2 cut(s)	647, 727
SmlI	CTYRAG	2 cut(s)	293, 716
SmoI	CTYRAG	2 cut(s)	293, 716
Sse9I	AATT	3 cut(s)	7, 143, 680
SseBI	AGGCCT	1 cut(s)	312
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	2 cut(s)	47, 200
SstI	GAGCTC	1 cut(s)	333
StuI	AGGCCT	1 cut(s)	312
StyD4I	CCNGG	3 cut(s)	66, 421, 604
StyI	CCWWGG	2 cut(s)	46, 706
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	3 cut(s)	15, 79, 474
TaqI	TCGA	3 cut(s)	252, 276, 369
TasI	AATT	3 cut(s)	7, 143, 680
TauI	GCSGC	5 cut(s)	165, 271, 283, 286, 301
TfiI	GAWTC	2 cut(s)	135, 686
TscAI	CASTG	2 cut(s)	250, 492
TseFI	GTSAC	2 cut(s)	72, 467
TseI	GCWGC	1 cut(s)	501
Tsp45I	GTSAC	2 cut(s)	72, 467
TspDTI	ATGAA	4 cut(s)	641, 678, 711, 767
TspGWI	ACGGA	3 cut(s)	71, 140, 227
TspRI	CASTG	2 cut(s)	250, 492
VpaK11BI	GGWCC	2 cut(s)	647, 727
XmaJI	CCTAGG	1 cut(s)	46
XspI	CTAG	2 cut(s)	47, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.