Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0021010

Physical Location & Seq

Genomic Coordinates Reverse (-)

1842224 .. 1844599

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCGAAGATCGGCGACGGAGATACAATAGAACTGAGGATACCTATTGAGCCCGATCGGCAGGGAAACCTGATTGTCGAAAGTAAGACAGATCACTATGATAGGGAAAGAAGCGGCGAAGATCGAGAGAAAAGAAGCGGCGAAGAGCGAGGACGTAACTCGCAGTATGCAGAGAGGCAAGAGAGGAAGAAAGAAGTGGAAGCACGGAAGCGCGCCAGAGGTCACGTTTCGCGCTTCGGAAGCGGAAGCGCGCCGGAAGCGCGCGGAAGCGCACGGAAGCGCGATTCCGGAAATTGTCTGCAAAACAAAACCTTCTTCTGCTCTCGGTCAAGGCCTTCCTCCATCTCCTCCGTCTCCTTCTTTTTCACACCCATCTTCTCTGACTACGAACCTCCATCTTTCTCTCTCGGACTCGATTTCGGGTTCGAATCGGAGCTCCAAACAGCTCCTCCGCCCAGCTCCACTCCTCCGCTTCCGGTGGACACTGATCTCGATCAAGTCCCCGAGCCGCAGATCGAGCCGCCGCGGGCGCTCAAGCGGCTGAAGCGAGGCCTGCCGGAGAAGCGGGAGCTCCCGACGACGCCGTTTTGGAGCGTTGAAGACGACATCGAAGAGTTCTCTTCTCCCGAAGATACTGTTCAAGGTCAACTTTGGGGAACCCCTGGTTGTGCTTTAGTTGCAGTTGATTGTTGTTTTCAGATTGTGAGTGACGTTATAGTGTTTGCAGTGCTGTTGGAGTGCTGCCCTTGTCTCTTCAGTTTGCAGTGTTGTTGGAGTGTTTTGTTTGACAATGTTCATGAGGGCGAGGATGTAGATGATGATGACCTTGATGTTGATGATCATGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

284

Amino Acids

31.76

Weight (kDa)

4.64

Isoelectric Point (pI)

65.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021010)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g26013 FvH4_1g28411 FvH4_3g30130 FvH4_5g03070 FvH4_6g06532

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	7 cut(s)	213, 232, 251, 262, 264, 282, 526
AccIII	TCCGGA	1 cut(s)	287
AcuI	CTGAAG	2 cut(s)	563, 739
AcyI	GRCGYC	1 cut(s)	581
AgsI	TTSAA	2 cut(s)	599, 641
AjnI	CCWGG	1 cut(s)	661
AluBI	AGCT	4 cut(s)	436, 446, 459, 571
AluI	AGCT	4 cut(s)	436, 446, 459, 571
Alw21I	GWGCWC	2 cut(s)	438, 573
Alw26I	GTCTC	2 cut(s)	358, 755
Ama87I	CYCGRG	1 cut(s)	503
Aor13HI	TCCGGA	1 cut(s)	287
AoxI	GGCC	2 cut(s)	332, 550
ApeKI	GCWGC	1 cut(s)	741
AsuII	TTCGAA	1 cut(s)	426
AvaI	CYCGRG	1 cut(s)	503
BanII	GRGCYC	3 cut(s)	54, 438, 573
BbsI	GAAGAC	1 cut(s)	606
Bbv12I	GWGCWC	2 cut(s)	438, 573
BbvI	GCAGC	1 cut(s)	728
BccI	CCATC	3 cut(s)	350, 380, 403
BceAI	ACGGC	1 cut(s)	568
BciT130I	CCWGG	1 cut(s)	663
BciVI	GTATCC	1 cut(s)	33
BclI	TGATCA	1 cut(s)	838
BcoDI	GTCTC	2 cut(s)	358, 755
BfoI	RGCGCY	1 cut(s)	533
BfuI	GTATCC	1 cut(s)	33
BglI	GCCNNNNNGGC	1 cut(s)	58
BisI	GCNGC	7 cut(s)	115, 139, 509, 521, 524, 539, 742
BlsI	GCNGC	7 cut(s)	116, 140, 510, 522, 525, 540, 743
Bme1390I	CCNGG	1 cut(s)	663
BmeT110I	CYCGRG	1 cut(s)	503
BmiI	GGNNCC	1 cut(s)	658
BmrFI	CCNGG	1 cut(s)	663
BpiI	GAAGAC	1 cut(s)	606
Bpu14I	TTCGAA	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	518
BsaBI	GATNNNNATC	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	581
BsaJI	CCNNGG	2 cut(s)	524, 661
BsaWI	WCCGGW	2 cut(s)	287, 475
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bse8I	GATNNNNATC	1 cut(s)	492
BseAI	TCCGGA	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	663
BseDI	CCNNGG	2 cut(s)	524, 661
BseGI	GGATG	1 cut(s)	814
BseJI	GATNNNNATC	1 cut(s)	492
BseMII	CTCAG	1 cut(s)	26
BsePI	GCGCGC	3 cut(s)	211, 249, 260
BseRI	GAGGAG	3 cut(s)	337, 438, 456
BseXI	GCAGC	1 cut(s)	728
BseYI	CCCAGC	1 cut(s)	455
Bsh1236I	CGCG	7 cut(s)	213, 232, 251, 262, 264, 282, 526
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	334, 552
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	438, 573
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	4 cut(s)	254, 288, 476, 557
BslFI	GGGAC	1 cut(s)	485
BsmAI	GTCTC	2 cut(s)	358, 755
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	334, 552
BsoBI	CYCGRG	1 cut(s)	503
Bsp119I	TTCGAA	1 cut(s)	426
Bsp1286I	GDGCHC	3 cut(s)	54, 438, 573
Bsp13I	TCCGGA	1 cut(s)	287
Bsp143I	GATC	8 cut(s)	9, 55, 91, 121, 487, 493, 513, 838
BspANI	GGCC	2 cut(s)	334, 552
BspCNI	CTCAG	1 cut(s)	27
BspEI	TCCGGA	1 cut(s)	287
BspFNI	CGCG	7 cut(s)	213, 232, 251, 262, 264, 282, 526
BspHI	TCATGA	2 cut(s)	796, 841
BspLI	GGNNCC	1 cut(s)	658
BspQI	GCTCTTC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	524, 661
BssHII	GCGCGC	3 cut(s)	211, 249, 260
BssMI	GATC	8 cut(s)	9, 55, 91, 121, 487, 493, 513, 838
BssNI	GRCGYC	1 cut(s)	581
Bst2UI	CCWGG	1 cut(s)	663
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	4 cut(s)	138, 606, 625, 758
BstACI	GRCGYC	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	426
BstC8I	GCNNGC	5 cut(s)	213, 251, 262, 528, 554
BstDEI	CTNAG	1 cut(s)	35
BstDSI	CCRYGG	1 cut(s)	524
BstF5I	GGATG	1 cut(s)	814
BstFNI	CGCG	7 cut(s)	213, 232, 251, 262, 264, 282, 526
BstH2I	RGCGCY	1 cut(s)	533
BstKTI	GATC	8 cut(s)	12, 58, 94, 124, 490, 496, 516, 841
BstMAI	GTCTC	2 cut(s)	358, 755
BstMBI	GATC	8 cut(s)	9, 55, 91, 121, 487, 493, 513, 838
BstMCI	CGRYCG	1 cut(s)	58
BstNI	CCWGG	1 cut(s)	663
BstSCI	CCNGG	1 cut(s)	661
BstUI	CGCG	7 cut(s)	213, 232, 251, 262, 264, 282, 526
BstV1I	GCAGC	1 cut(s)	728
BstV2I	GAAGAC	1 cut(s)	606
BsuI	GTATCC	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	334, 552
BtgI	CCRYGG	1 cut(s)	524
BtsCI	GGATG	1 cut(s)	814
BtsI	GCAGTG	2 cut(s)	732, 770
BtsIMutI	CAGTG	3 cut(s)	483, 732, 770
Cac8I	GCNNGC	5 cut(s)	213, 251, 262, 528, 554
CciI	TCATGA	2 cut(s)	796, 841
Cfr42I	CCGCGG	1 cut(s)	527
CseI	GACGC	1 cut(s)	589
CviAII	CATG	2 cut(s)	797, 842
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	8 cut(s)	11, 57, 93, 123, 489, 495, 515, 840
DpnII	GATC	8 cut(s)	9, 55, 91, 121, 487, 493, 513, 838
Eam1104I	CTCTTC	4 cut(s)	138, 606, 625, 758
EarI	CTCTTC	4 cut(s)	138, 606, 625, 758
EciI	GGCGGA	1 cut(s)	441
Ecl136II	GAGCTC	2 cut(s)	436, 571
Eco147I	AGGCCT	2 cut(s)	334, 552
Eco24I	GRGCYC	3 cut(s)	54, 438, 573
Eco53kI	GAGCTC	2 cut(s)	436, 571
Eco57I	CTGAAG	2 cut(s)	563, 739
Eco88I	CYCGRG	1 cut(s)	503
EcoICRI	GAGCTC	2 cut(s)	436, 571
EcoRII	CCWGG	1 cut(s)	661
EcoT38I	GRGCYC	3 cut(s)	54, 438, 573
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	2 cut(s)	800, 845
FaiI	YATR	5 cut(s)	99, 168, 716, 798, 843
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	2 cut(s)	796, 841
FauI	CCCGC	2 cut(s)	519, 558
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	7 cut(s)	115, 139, 509, 521, 524, 539, 742
FokI	GGATG	1 cut(s)	821
FriOI	GRGCYC	3 cut(s)	54, 438, 573
Fsp4HI	GCNGC	7 cut(s)	115, 139, 509, 521, 524, 539, 742
GluI	GCNGC	7 cut(s)	115, 139, 509, 521, 524, 539, 742
GsaI	CCCAGC	1 cut(s)	459
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	334, 552
HapII	CCGG	4 cut(s)	254, 288, 476, 557
HgaI	GACGC	1 cut(s)	589
Hin1I	GRCGYC	1 cut(s)	581
Hin1II	CATG	2 cut(s)	800, 845
HincII	GTYRAC	1 cut(s)	647
HindII	GTYRAC	1 cut(s)	647
HinfI	GANTC	3 cut(s)	284, 411, 428
HpaII	CCGG	4 cut(s)	254, 288, 476, 557
Hpy166II	GTNNAC	2 cut(s)	481, 647
Hpy188I	TCNGA	5 cut(s)	239, 382, 410, 433, 699
Hpy188III	TCNNGA	7 cut(s)	125, 288, 491, 574, 626, 797, 842
Hpy8I	GTNNAC	2 cut(s)	481, 647
Hpy99I	CGWCG	3 cut(s)	20, 580, 583
HpyAV	CCTTC	3 cut(s)	322, 345, 367
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	3 cut(s)	154, 225, 711
HpyCH4V	TGCA	5 cut(s)	170, 301, 680, 725, 763
HpyF3I	CTNAG	1 cut(s)	35
HpySE526I	ACGT	3 cut(s)	154, 225, 711
Hsp92I	GRCGYC	1 cut(s)	581
Hsp92II	CATG	2 cut(s)	800, 845
Kpn2I	TCCGGA	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	838
KspI	CCGCGG	1 cut(s)	527
Kzo9I	GATC	8 cut(s)	9, 55, 91, 121, 487, 493, 513, 838
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	7 cut(s)	433, 441, 451, 464, 568, 576, 591
Lsp1109I	GCAGC	1 cut(s)	728
MaeII	ACGT	3 cut(s)	154, 225, 711
MaeIII	GTNAC	3 cut(s)	155, 221, 707
MalI	GATC	8 cut(s)	11, 57, 93, 123, 489, 495, 515, 840
MboI	GATC	8 cut(s)	9, 55, 91, 121, 487, 493, 513, 838
MhlI	GDGCHC	3 cut(s)	54, 438, 573
MluCI	AATT	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	405
MmeI	TCCRAC	2 cut(s)	714, 752
MroI	TCCGGA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	526
MspI	CCGG	4 cut(s)	254, 288, 476, 557
MspR9I	CCNGG	1 cut(s)	663
MvaI	CCWGG	1 cut(s)	663
MvnI	CGCG	7 cut(s)	213, 232, 251, 262, 264, 282, 526
NdeII	GATC	8 cut(s)	9, 55, 91, 121, 487, 493, 513, 838
NlaIII	CATG	2 cut(s)	800, 845
NlaIV	GGNNCC	1 cut(s)	658
NmuCI	GTSAC	2 cut(s)	221, 707
NspV	TTCGAA	1 cut(s)	426
PagI	TCATGA	2 cut(s)	796, 841
PauI	GCGCGC	3 cut(s)	211, 249, 260
PceI	AGGCCT	2 cut(s)	334, 552
PciSI	GCTCTTC	1 cut(s)	138
PfeI	GAWTC	2 cut(s)	284, 428
PkrI	GCNGC	7 cut(s)	116, 140, 510, 522, 525, 540, 743
Ple19I	CGATCG	1 cut(s)	58
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
Psp124BI	GAGCTC	2 cut(s)	438, 573
Psp6I	CCWGG	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	661
PspN4I	GGNNCC	1 cut(s)	658
PsrI	GAACNNNNNNTAC	2 cut(s)	24, 56
PteI	GCGCGC	3 cut(s)	211, 249, 260
PvuI	CGATCG	1 cut(s)	58
SacI	GAGCTC	2 cut(s)	438, 573
SacII	CCGCGG	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	138
SatI	GCNGC	7 cut(s)	115, 139, 509, 521, 524, 539, 742
Sau3AI	GATC	8 cut(s)	9, 55, 91, 121, 487, 493, 513, 838
SchI	GAGTC	1 cut(s)	405
ScrFI	CCNGG	1 cut(s)	663
SduI	GDGCHC	3 cut(s)	54, 438, 573
Sfr303I	CCGCGG	1 cut(s)	527
SfuI	TTCGAA	1 cut(s)	426
SgrBI	CCGCGG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	1 cut(s)	292
SseBI	AGGCCT	2 cut(s)	334, 552
SstI	GAGCTC	2 cut(s)	438, 573
StuI	AGGCCT	2 cut(s)	334, 552
StyD4I	CCNGG	1 cut(s)	661
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	3 cut(s)	157, 228, 714
TaqI	TCGA	7 cut(s)	78, 124, 414, 426, 492, 516, 609
TaqII	GACCGA	1 cut(s)	315
TasI	AATT	1 cut(s)	292
TauI	GCSGC	6 cut(s)	117, 141, 511, 523, 526, 541
TfiI	GAWTC	2 cut(s)	284, 428
TscAI	CASTG	3 cut(s)	490, 732, 770
TseFI	GTSAC	2 cut(s)	221, 707
TseI	GCWGC	1 cut(s)	741
Tsp45I	GTSAC	2 cut(s)	221, 707
TspDTI	ATGAA	1 cut(s)	785
TspGWI	ACGGA	4 cut(s)	33, 220, 289, 340
TspRI	CASTG	3 cut(s)	490, 732, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.