FvH4_1g27530

Small ubiquitinrelated modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017974
Physical Location & Seq
Reverse (-)
19185898 .. 19186915
1018 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g27530.t1

Sequence Viewer

Length: 315 bp
ATGTCCGGCCTCATGAACACAGACAAAGACAATGGCAAGAAGCCAGCCGCCGCCGCCTCCGAGAGGAAGTCCACCGACGTCAACCTCAAGGTCAAGAGCCAGAAATTTAGAACCATGTACTTCAGGATGAAGCGCCATACTCCACTTCAGAAGCTTGTTGATGTTTACACTAGGAAATACGACGTTTACAGCTTCAAGTTCCTCTATGACGGGCAAGGCATCAATCCCAAGCTCACTGCACTCCAGTCTGGAATGAAAGATGGGGATGAAATCGATGCAATGCTGCACGCTGACGGAGGTGGTCGACGTTGCTAG

Protein Analysis

105

Amino Acids

11.78

Weight (kDa)

9.71

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 28 - 95 5.7e-12 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017974)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27530
rosa_chinensis RchiOBHm_Chr3g0488501
rosa_multiflora Rmu_sc0005363.1_g000003
rosa_roxburghii Rroxscaffold_6G00394210
rosa_rugosa Rorug03G0238600 Rorug03G0238600
rosa_samantha Rh3AG287500 Rh3BG324400 Rh3CG321700 Rh3DG320400
rosa_wichuraiana Rw3G025460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 304
AciI CCGC 3 cut(s) 48, 51, 54
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 2 cut(s) 106, 131
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 1 cut(s) 196
AluBI AGCT 3 cut(s) 154, 192, 232
AluI AGCT 3 cut(s) 154, 192, 232
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 1 cut(s) 104
AspLEI GCGC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 270
BccI CCATC 1 cut(s) 254
BfaI CTAG 2 cut(s) 171, 313
BfoI RGCGCY 1 cut(s) 136
BisI GCNGC 4 cut(s) 48, 51, 54, 284
BlsI GCNGC 4 cut(s) 49, 52, 55, 285
BmsI GCATC 2 cut(s) 228, 265
BpmI CTGGAG 1 cut(s) 227
BpuEI CTTGAG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 273
BsaHI GRCGYC 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 285
BseCI ATCGAT 1 cut(s) 273
BseGI GGATG 2 cut(s) 132, 271
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 270
BsgI GTGCAG 2 cut(s) 222, 269
BshFI GGCC 1 cut(s) 9
BshVI ATCGAT 1 cut(s) 273
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 63
BsnI GGCC 1 cut(s) 9
BspACI CCGC 3 cut(s) 48, 51, 54
BspANI GGCC 1 cut(s) 9
BspDI ATCGAT 1 cut(s) 273
BspHI TCATGA 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 1 cut(s) 244
BssNI GRCGYC 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 45, 288
BstENI CCTNNNNNAGG 1 cut(s) 61
BstF5I GGATG 2 cut(s) 132, 271
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 270
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 1 cut(s) 9
BsuTUI ATCGAT 1 cut(s) 273
BtsCI GGATG 2 cut(s) 132, 271
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 45, 288
CciI TCATGA 1 cut(s) 12
CfoI GCGC 1 cut(s) 135
ClaI ATCGAT 1 cut(s) 273
Csp6I GTAC 1 cut(s) 118
CviAII CATG 2 cut(s) 13, 115
CviJI RGCY 7 cut(s) 9, 43, 47, 99, 154, 192, 232
CviKI_1 RGCY 7 cut(s) 9, 43, 47, 99, 154, 192, 232
CviQI GTAC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 106, 131
EcoNI CCTNNNNNAGG 1 cut(s) 61
FaeI CATG 2 cut(s) 16, 118
FaiI YATR 4 cut(s) 14, 116, 138, 207
FatI CATG 2 cut(s) 12, 114
FblI GTMKAC 1 cut(s) 304
Fnu4HI GCNGC 4 cut(s) 48, 51, 54, 284
FokI GGATG 2 cut(s) 139, 278
Fsp4HI GCNGC 4 cut(s) 48, 51, 54, 284
FspBI CTAG 2 cut(s) 171, 313
GlaI GCGC 1 cut(s) 134
GluI GCNGC 4 cut(s) 48, 51, 54, 284
GsuI CTGGAG 1 cut(s) 227
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 1 cut(s) 9
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 135
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 16, 118
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HincII GTYRAC 2 cut(s) 82, 305
HindII GTYRAC 2 cut(s) 82, 305
HindIII AAGCTT 1 cut(s) 152
HpaII CCGG 1 cut(s) 6
Hpy166II GTNNAC 5 cut(s) 72, 82, 166, 187, 305
Hpy188I TCNGA 2 cut(s) 61, 150
Hpy188III TCNNGA 4 cut(s) 13, 94, 124, 249
Hpy8I GTNNAC 5 cut(s) 72, 82, 166, 187, 305
Hpy99I CGWCG 3 cut(s) 80, 185, 309
HpyCH4IV ACGT 3 cut(s) 78, 183, 307
HpyCH4V TGCA 3 cut(s) 239, 278, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpySE526I ACGT 3 cut(s) 78, 183, 307
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 16, 118
HspAI GCGC 1 cut(s) 133
LpnPI CCDG 6 cut(s) 19, 57, 109, 113, 234, 257
Lsp1109I GCAGC 1 cut(s) 270
LweI GCATC 2 cut(s) 228, 265
MaeI CTAG 2 cut(s) 171, 313
MaeII ACGT 3 cut(s) 78, 183, 307
MluCI AATT 1 cut(s) 104
MnlI CCTC 6 cut(s) 20, 57, 67, 95, 212, 290
MspI CCGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 53
NlaIII CATG 2 cut(s) 16, 118
PagI TCATGA 1 cut(s) 12
PkrI GCNGC 4 cut(s) 49, 52, 55, 285
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SalI GTCGAC 1 cut(s) 303
SatI GCNGC 4 cut(s) 48, 51, 54, 284
SetI ASST 9 cut(s) 81, 87, 93, 156, 186, 194, 234, 301, 310
SfaNI GCATC 2 cut(s) 228, 265
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 104
SsiI CCGC 3 cut(s) 48, 51, 54
SspMI CTAG 2 cut(s) 171, 313
TaiI ACGT 3 cut(s) 81, 186, 310
TaqI TCGA 2 cut(s) 273, 304
TasI AATT 1 cut(s) 104
TatI WGTACW 1 cut(s) 117
TauI GCSGC 3 cut(s) 50, 53, 56
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 283
TspDTI ATGAA 4 cut(s) 29, 143, 269, 282
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 1 cut(s) 241
XagI CCTNNNNNAGG 1 cut(s) 61
XapI RAATTY 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 304
XspI CTAG 2 cut(s) 171, 313
ZraI GACGTC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.