Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005363.1

Orthogroup ID

OG0017974

Physical Location & Seq

Genomic Coordinates Forward (+)

9821 .. 10373

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005363.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

atgtccggcatcatgaacagaaacaaagacaatggcaagaagccagccgccgcctccgggcagaactccactgacgtcaacctcaaagtcaagaaccagaaattgaaaacaatgtacttcaggatgaggcgcaatactccgctccaggagcttattgatgtttactgtaagaaaaacgacgtttaccacttccgattcctctttgatggccatgggattaatcccaagctcactgcactccagtctggaatgaaagatggggatgaaatttctgcaatgttgcacgttgacggaggtggtcgacgtggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

103

Amino Acids

11.59

Weight (kDa)

9.88

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017974)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g27530
rosa_chinensis	RchiOBHm_Chr3g0488501
rosa_multiflora	Rmu_sc0005363.1_g000003
rosa_roxburghii	Rroxscaffold_6G00394210
rosa_rugosa	Rorug03G0238600 Rorug03G0238600
rosa_samantha	Rh3AG287500 Rh3BG324400 Rh3CG321700 Rh3DG320400
rosa_wichuraiana	Rw3G025460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
AccBSI	CCGCTC	1 cut(s)	142
AccI	GTMKAC	1 cut(s)	301
AciI	CCGC	3 cut(s)	48, 51, 140
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	267
AcuI	CTGAAG	1 cut(s)	103
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	106
AjiI	CACGTC	1 cut(s)	305
AjnI	CCWGG	1 cut(s)	144
AluBI	AGCT	2 cut(s)	151, 229
AluI	AGCT	2 cut(s)	151, 229
AoxI	GGCC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	267
AseI	ATTAAT	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	210
BccI	CCATC	2 cut(s)	200, 251
BciT130I	CCWGG	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	58
BfaI	CTAG	1 cut(s)	310
BisI	GCNGC	2 cut(s)	48, 51
BlsI	GCNGC	2 cut(s)	49, 52
Bme1390I	CCNGG	2 cut(s)	58, 146
BmgBI	CACGTC	1 cut(s)	305
BmrFI	CCNGG	2 cut(s)	58, 146
BmsI	GCATC	1 cut(s)	18
BpmI	CTGGAG	2 cut(s)	128, 224
BpuMI	CCSGG	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	2 cut(s)	129, 268
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	219
BshFI	GGCC	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	6, 57
BslI	CCNNNNNNNGG	1 cut(s)	57
BsnI	GGCC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	3 cut(s)	48, 51, 140
BspANI	GGCC	1 cut(s)	210
BspHI	TCATGA	1 cut(s)	12
BsrBI	CCGCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	1 cut(s)	211
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	129, 268
BstHHI	GCGC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	2 cut(s)	56, 144
BsuRI	GGCC	1 cut(s)	210
BtgI	CCRYGG	1 cut(s)	211
BtrI	CACGTC	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	129, 268
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	69, 231
Cac8I	GCNNGC	1 cut(s)	45
CciI	TCATGA	1 cut(s)	12
CfoI	GCGC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	13, 212
CviJI	RGCY	6 cut(s)	43, 47, 151, 210, 229, 309
CviKI_1	RGCY	6 cut(s)	43, 47, 151, 210, 229, 309
CviQI	GTAC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	144
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	2 cut(s)	16, 215
FaiI	YATR	2 cut(s)	14, 213
FatI	CATG	2 cut(s)	12, 211
FblI	GTMKAC	1 cut(s)	301
Fnu4HI	GCNGC	2 cut(s)	48, 51
FokI	GGATG	2 cut(s)	136, 275
Fsp4HI	GCNGC	2 cut(s)	48, 51
FspBI	CTAG	1 cut(s)	310
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	2 cut(s)	48, 51
GsuI	CTGGAG	2 cut(s)	128, 224
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	2 cut(s)	6, 57
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	16, 215
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HincII	GTYRAC	3 cut(s)	79, 289, 302
HindII	GTYRAC	3 cut(s)	79, 289, 302
HinfI	GANTC	1 cut(s)	195
HpaII	CCGG	2 cut(s)	6, 57
Hpy166II	GTNNAC	5 cut(s)	79, 163, 184, 289, 302
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	4 cut(s)	13, 91, 121, 246
Hpy8I	GTNNAC	5 cut(s)	79, 163, 184, 289, 302
Hpy99I	CGWCG	2 cut(s)	182, 306
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	4 cut(s)	75, 180, 285, 304
HpyCH4V	TGCA	3 cut(s)	236, 275, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpySE526I	ACGT	4 cut(s)	75, 180, 285, 304
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	16, 215
HspAI	GCGC	1 cut(s)	130
LmnI	GCTCC	2 cut(s)	147, 148
LpnPI	CCDG	9 cut(s)	19, 57, 70, 106, 110, 131, 158, 231, 254
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	310
MaeII	ACGT	4 cut(s)	75, 180, 285, 304
MbiI	CCGCTC	1 cut(s)	142
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	2 cut(s)	101, 267
MluNI	TGGCCA	1 cut(s)	210
MnlI	CCTC	5 cut(s)	64, 92, 120, 209, 287
Mox20I	TGGCCA	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	210
MspI	CCGG	2 cut(s)	6, 57
MspR9I	CCNGG	2 cut(s)	58, 146
MvaI	CCWGG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	148
NciI	CCSGG	1 cut(s)	58
NcoI	CCATGG	1 cut(s)	211
NlaIII	CATG	2 cut(s)	16, 215
PagI	TCATGA	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	195
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	49, 52
PshBI	ATTAAT	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SalI	GTCGAC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	48, 51
ScrFI	CCNGG	2 cut(s)	58, 146
SetI	ASST	8 cut(s)	78, 84, 153, 183, 231, 288, 298, 307
SfaNI	GCATC	1 cut(s)	18
Sse9I	AATT	2 cut(s)	101, 267
SsiI	CCGC	3 cut(s)	48, 51, 140
SspMI	CTAG	1 cut(s)	310
StyD4I	CCNGG	2 cut(s)	56, 144
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	4 cut(s)	78, 183, 288, 307
TaqI	TCGA	1 cut(s)	301
TasI	AATT	2 cut(s)	101, 267
TatI	WGTACW	1 cut(s)	114
TauI	GCSGC	2 cut(s)	50, 53
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	2 cut(s)	76, 238
TspDTI	ATGAA	3 cut(s)	29, 266, 279
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	2 cut(s)	76, 238
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	301
XspI	CTAG	1 cut(s)	310
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.