Rh3AG287500

Small ubiquitinrelated modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0017974
Physical Location & Seq
Forward (+)
34407869 .. 34409022
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG287500.1

Sequence Viewer

Length: 291 bp
ATGTCCGGCATCATGAACAGAAACAAAGACAATGGCAAGAAGCCAGCCGCCGCCTCCGGGCAGAACTCCACCGACGTCAACCTCAAAGTCAAGAACCAGAAATTGAAAACAATGTACTTCAGGATGAGGCGCAATACTCCGCTCCAGGAGCTTATTGATGTTTACTGTAAGAAAAACGACGTTTACCACTTCCGATTCCTCTTTGATGGCCATGGGATTAATCCCAAGCTCACTGCACTCCAGGTCAACTACGTCCTTTTCTGCTGCGCGCTTTATATTTGTGCATGTTAA

Protein Analysis

96

Amino Acids

11.04

Weight (kDa)

9.57

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 27 - 79 3.1e-10 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017974)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27530
rosa_chinensis RchiOBHm_Chr3g0488501
rosa_multiflora Rmu_sc0005363.1_g000003
rosa_roxburghii Rroxscaffold_6G00394210
rosa_rugosa Rorug03G0238600 Rorug03G0238600
rosa_samantha Rh3AG287500 Rh3BG324400 Rh3CG321700 Rh3DG320400
rosa_wichuraiana Rw3G025460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccBSI CCGCTC 1 cut(s) 142
AccII CGCG 1 cut(s) 269
AciI CCGC 3 cut(s) 48, 51, 140
AcoI YGGCCR 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 2 cut(s) 144, 240
AluBI AGCT 2 cut(s) 151, 229
AluI AGCT 2 cut(s) 151, 229
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 264
AseI ATTAAT 1 cut(s) 219
AspLEI GCGC 3 cut(s) 132, 269, 271
AsuC2I CCSGG 1 cut(s) 58
BalI TGGCCA 1 cut(s) 210
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 2 cut(s) 146, 242
BcnI CCSGG 1 cut(s) 58
BisI GCNGC 3 cut(s) 48, 51, 265
BlsI GCNGC 3 cut(s) 49, 52, 266
Bme1390I CCNGG 3 cut(s) 58, 146, 242
BmrFI CCNGG 3 cut(s) 58, 146, 242
BmsI GCATC 1 cut(s) 18
BpmI CTGGAG 2 cut(s) 128, 224
BpuMI CCSGG 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 57
BseBI CCWGG 2 cut(s) 146, 242
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 57
BsePI GCGCGC 1 cut(s) 267
BseXI GCAGC 1 cut(s) 251
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 1 cut(s) 210
BsiSI CCGG 2 cut(s) 6, 57
BslI CCNNNNNNNGG 1 cut(s) 57
BsnI GGCC 1 cut(s) 210
Bsp19I CCATGG 1 cut(s) 211
BspACI CCGC 3 cut(s) 48, 51, 140
BspANI GGCC 1 cut(s) 210
BspFNI CGCG 1 cut(s) 269
BspHI TCATGA 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 211
BssHII GCGCGC 1 cut(s) 267
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 2 cut(s) 146, 242
Bst4CI ACNGT 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 45, 269
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 269
BstHHI GCGC 3 cut(s) 132, 269, 271
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 2 cut(s) 146, 242
BstNSI RCATGY 1 cut(s) 288
BstSCI CCNGG 3 cut(s) 56, 144, 240
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 45, 269
CciI TCATGA 1 cut(s) 12
CfoI GCGC 3 cut(s) 132, 269, 271
Csp6I GTAC 1 cut(s) 115
CviAII CATG 3 cut(s) 13, 212, 285
CviJI RGCY 5 cut(s) 43, 47, 151, 210, 229
CviKI_1 RGCY 5 cut(s) 43, 47, 151, 210, 229
CviQI GTAC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 103
EcoRII CCWGG 2 cut(s) 144, 240
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 3 cut(s) 16, 215, 288
FaiI YATR 4 cut(s) 14, 213, 276, 286
FatI CATG 3 cut(s) 12, 211, 284
Fnu4HI GCNGC 3 cut(s) 48, 51, 265
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 3 cut(s) 48, 51, 265
GlaI GCGC 3 cut(s) 131, 268, 270
GluI GCNGC 3 cut(s) 48, 51, 265
GsuI CTGGAG 2 cut(s) 128, 224
HaeIII GGCC 1 cut(s) 210
HapII CCGG 2 cut(s) 6, 57
HhaI GCGC 3 cut(s) 132, 269, 271
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 3 cut(s) 16, 215, 288
Hin6I GCGC 3 cut(s) 130, 267, 269
HinP1I GCGC 3 cut(s) 130, 267, 269
HincII GTYRAC 2 cut(s) 79, 247
HindII GTYRAC 2 cut(s) 79, 247
HinfI GANTC 1 cut(s) 195
HpaII CCGG 2 cut(s) 6, 57
Hpy166II GTNNAC 4 cut(s) 79, 163, 184, 247
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 3 cut(s) 13, 91, 121
Hpy8I GTNNAC 4 cut(s) 79, 163, 184, 247
Hpy99I CGWCG 2 cut(s) 77, 182
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 3 cut(s) 75, 180, 252
HpyCH4V TGCA 2 cut(s) 236, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpySE526I ACGT 3 cut(s) 75, 180, 252
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 3 cut(s) 16, 215, 288
HspAI GCGC 3 cut(s) 130, 267, 269
LmnI GCTCC 2 cut(s) 147, 148
LpnPI CCDG 9 cut(s) 19, 57, 70, 106, 110, 131, 158, 227, 254
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 18
MaeII ACGT 3 cut(s) 75, 180, 252
MbiI CCGCTC 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 1 cut(s) 101
MluNI TGGCCA 1 cut(s) 210
MnlI CCTC 4 cut(s) 64, 92, 120, 209
Mox20I TGGCCA 1 cut(s) 210
MscI TGGCCA 1 cut(s) 210
MseI TTAA 2 cut(s) 219, 289
Msp20I TGGCCA 1 cut(s) 210
MspI CCGG 2 cut(s) 6, 57
MspR9I CCNGG 3 cut(s) 58, 146, 242
MvaI CCWGG 2 cut(s) 146, 242
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 58
NcoI CCATGG 1 cut(s) 211
NlaIII CATG 3 cut(s) 16, 215, 288
NspI RCATGY 1 cut(s) 288
PagI TCATGA 1 cut(s) 12
PauI GCGCGC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 195
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 3 cut(s) 49, 52, 266
PshBI ATTAAT 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 144, 240
PspGI CCWGG 2 cut(s) 144, 240
PteI GCGCGC 1 cut(s) 267
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 219, 289
SatI GCNGC 3 cut(s) 48, 51, 265
ScrFI CCNGG 3 cut(s) 58, 146, 242
SetI ASST 7 cut(s) 78, 84, 153, 183, 231, 246, 255
SfaNI GCATC 1 cut(s) 18
Sse9I AATT 1 cut(s) 101
SsiI CCGC 3 cut(s) 48, 51, 140
StyD4I CCNGG 3 cut(s) 56, 144, 240
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 3 cut(s) 78, 183, 255
TasI AATT 1 cut(s) 101
TatI WGTACW 1 cut(s) 114
TauI GCSGC 2 cut(s) 50, 53
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 2 cut(s) 219, 289
Tru9I TTAA 2 cut(s) 219, 289
TscAI CASTG 1 cut(s) 238
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 1 cut(s) 238
VspI ATTAAT 1 cut(s) 219
XceI RCATGY 1 cut(s) 288
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.