Rh3CG321700

Small ubiquitinrelated modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0017974
Physical Location & Seq
Forward (+)
34650761 .. 34651917
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG321700.1

Sequence Viewer

Length: 291 bp
ATGTCCGGCATCATGAACAGAAACAAAGACAATGGCAAGAAGCCAGCCGCCGCCTCCGGGCAGAATTCCACTGACGTCAACCTCAAAGTCAAGAACCAGAAATTGAAAACAATGTACTTCAGGATGAGGCGCAATACTCCGCTCCAGGAGCTTATTGATGTTTACTGTAAGAAAAACGACGTTTACCACTTCCGATTCCTCTTTGATGGCCATGGGATTAATCCCAAGCTCACTGCACTCCAGGTCAACTACGTCCTTTTCTGCTGCGCGCTTTATATTTGTGCATGTTAA

Protein Analysis

96

Amino Acids

11.04

Weight (kDa)

9.57

Isoelectric Point (pI)

28.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 27 - 79 3.1e-10 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017974)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g27530
rosa_chinensis RchiOBHm_Chr3g0488501
rosa_multiflora Rmu_sc0005363.1_g000003
rosa_roxburghii Rroxscaffold_6G00394210
rosa_rugosa Rorug03G0238600 Rorug03G0238600
rosa_samantha Rh3AG287500 Rh3BG324400 Rh3CG321700 Rh3DG320400
rosa_wichuraiana Rw3G025460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccBSI CCGCTC 1 cut(s) 142
AccII CGCG 1 cut(s) 269
AciI CCGC 3 cut(s) 48, 51, 140
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 1 cut(s) 64
AcuI CTGAAG 1 cut(s) 103
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 2 cut(s) 144, 240
AluBI AGCT 2 cut(s) 151, 229
AluI AGCT 2 cut(s) 151, 229
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 64
AseI ATTAAT 1 cut(s) 219
AspLEI GCGC 3 cut(s) 132, 269, 271
AsuC2I CCSGG 1 cut(s) 58
BalI TGGCCA 1 cut(s) 210
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 2 cut(s) 146, 242
BcnI CCSGG 1 cut(s) 58
BisI GCNGC 3 cut(s) 48, 51, 265
BlsI GCNGC 3 cut(s) 49, 52, 266
Bme1390I CCNGG 3 cut(s) 58, 146, 242
BmrFI CCNGG 3 cut(s) 58, 146, 242
BmsI GCATC 1 cut(s) 18
BpmI CTGGAG 2 cut(s) 128, 224
BpuMI CCSGG 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 1 cut(s) 57
BseBI CCWGG 2 cut(s) 146, 242
BseDI CCNNGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 57
BsePI GCGCGC 1 cut(s) 267
BseXI GCAGC 1 cut(s) 251
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 269
BshFI GGCC 1 cut(s) 210
BsiSI CCGG 2 cut(s) 6, 57
BslI CCNNNNNNNGG 1 cut(s) 57
BsnI GGCC 1 cut(s) 210
Bsp19I CCATGG 1 cut(s) 211
BspACI CCGC 3 cut(s) 48, 51, 140
BspANI GGCC 1 cut(s) 210
BspFNI CGCG 1 cut(s) 269
BspHI TCATGA 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 211
BssHII GCGCGC 1 cut(s) 267
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 211
Bst2UI CCWGG 2 cut(s) 146, 242
Bst4CI ACNGT 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 2 cut(s) 45, 269
BstDSI CCRYGG 1 cut(s) 211
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 269
BstHHI GCGC 3 cut(s) 132, 269, 271
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 2 cut(s) 146, 242
BstNSI RCATGY 1 cut(s) 288
BstSCI CCNGG 3 cut(s) 56, 144, 240
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 1 cut(s) 251
BsuRI GGCC 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 211
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 2 cut(s) 69, 231
Cac8I GCNNGC 2 cut(s) 45, 269
CciI TCATGA 1 cut(s) 12
CfoI GCGC 3 cut(s) 132, 269, 271
Csp6I GTAC 1 cut(s) 115
CviAII CATG 3 cut(s) 13, 212, 285
CviJI RGCY 5 cut(s) 43, 47, 151, 210, 229
CviKI_1 RGCY 5 cut(s) 43, 47, 151, 210, 229
CviQI GTAC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 103
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 144, 240
EcoT14I CCWWGG 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 3 cut(s) 16, 215, 288
FaiI YATR 4 cut(s) 14, 213, 276, 286
FatI CATG 3 cut(s) 12, 211, 284
Fnu4HI GCNGC 3 cut(s) 48, 51, 265
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 3 cut(s) 48, 51, 265
GlaI GCGC 3 cut(s) 131, 268, 270
GluI GCNGC 3 cut(s) 48, 51, 265
GsuI CTGGAG 2 cut(s) 128, 224
HaeIII GGCC 1 cut(s) 210
HapII CCGG 2 cut(s) 6, 57
HhaI GCGC 3 cut(s) 132, 269, 271
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 3 cut(s) 16, 215, 288
Hin6I GCGC 3 cut(s) 130, 267, 269
HinP1I GCGC 3 cut(s) 130, 267, 269
HincII GTYRAC 2 cut(s) 79, 247
HindII GTYRAC 2 cut(s) 79, 247
HinfI GANTC 1 cut(s) 195
HpaII CCGG 2 cut(s) 6, 57
Hpy166II GTNNAC 4 cut(s) 79, 163, 184, 247
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 3 cut(s) 13, 91, 121
Hpy8I GTNNAC 4 cut(s) 79, 163, 184, 247
Hpy99I CGWCG 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 3 cut(s) 75, 180, 252
HpyCH4V TGCA 2 cut(s) 236, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpySE526I ACGT 3 cut(s) 75, 180, 252
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 3 cut(s) 16, 215, 288
HspAI GCGC 3 cut(s) 130, 267, 269
LmnI GCTCC 2 cut(s) 147, 148
LpnPI CCDG 9 cut(s) 19, 57, 70, 106, 110, 131, 158, 227, 254
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 18
MaeII ACGT 3 cut(s) 75, 180, 252
MbiI CCGCTC 1 cut(s) 142
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 2 cut(s) 64, 101
MluNI TGGCCA 1 cut(s) 210
MnlI CCTC 4 cut(s) 64, 92, 120, 209
Mox20I TGGCCA 1 cut(s) 210
MscI TGGCCA 1 cut(s) 210
MseI TTAA 2 cut(s) 219, 289
Msp20I TGGCCA 1 cut(s) 210
MspI CCGG 2 cut(s) 6, 57
MspR9I CCNGG 3 cut(s) 58, 146, 242
MvaI CCWGG 2 cut(s) 146, 242
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 58
NcoI CCATGG 1 cut(s) 211
NlaIII CATG 3 cut(s) 16, 215, 288
NspI RCATGY 1 cut(s) 288
PagI TCATGA 1 cut(s) 12
PauI GCGCGC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 195
PfoI TCCNGGA 1 cut(s) 144
PkrI GCNGC 3 cut(s) 49, 52, 266
PshBI ATTAAT 1 cut(s) 219
Psp6I CCWGG 2 cut(s) 144, 240
PspGI CCWGG 2 cut(s) 144, 240
PteI GCGCGC 1 cut(s) 267
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SaqAI TTAA 2 cut(s) 219, 289
SatI GCNGC 3 cut(s) 48, 51, 265
ScrFI CCNGG 3 cut(s) 58, 146, 242
SetI ASST 7 cut(s) 78, 84, 153, 183, 231, 246, 255
SfaNI GCATC 1 cut(s) 18
Sse9I AATT 2 cut(s) 64, 101
SsiI CCGC 3 cut(s) 48, 51, 140
StyD4I CCNGG 3 cut(s) 56, 144, 240
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 3 cut(s) 78, 183, 255
TasI AATT 2 cut(s) 64, 101
TatI WGTACW 1 cut(s) 114
TauI GCSGC 2 cut(s) 50, 53
TfiI GAWTC 1 cut(s) 195
Tru1I TTAA 2 cut(s) 219, 289
Tru9I TTAA 2 cut(s) 219, 289
TscAI CASTG 2 cut(s) 76, 238
TseI GCWGC 1 cut(s) 264
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 2 cut(s) 76, 238
VspI ATTAAT 1 cut(s) 219
XapI RAATTY 1 cut(s) 64
XceI RCATGY 1 cut(s) 288
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.