FvH4_1g28081

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017591
Physical Location & Seq
Forward (+)
19922862 .. 19923910
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28081.t1

Sequence Viewer

Length: 789 bp
ATGATAATTTGGGCTCTAATTAGGCCCAAAATCAACCTAACTGTGAATGGAGTCACGCAACAACGTCGTTATGCCACTCCAACTGAAATACAGTTTTGTAGCGATGATGATGAAGAGGAAGTGGAAGAGGAGCAATGCACCAGAAGCTCTTCCTTGGTGGCATCCGACGACGAGTATGCTGATTCTTGTTCTACAAGAAAAAGATCCAGGTCAGCTAGTAGTGCTAAAGCTAATAGATCTTCCGTGGTGGCAGGGCGAGTGTGGAATGAGAAGGAGGAAATCACCCTCTTAGGACATCTCATTGCAAAAGTCCCCAGAGAAAAAATCAACTTTTTATTCCCCAACAAGGAAAAAGAACAAATAAGGCGCAAAATCAGACATCTCAAGGAAAAATTTCAAAAACATAAAGACGGTGCCAAGTTCATAAATCTCCATCAGGAGAAGTTGTACGATTTATCGAACAAAGTCTGGGGTGAGAACACTACTACTACTACTACCACTACTAGTTCTGATAAAGAGGGTGGACAAGAGAAGGATTCGATGAATGTTGATGATGATGTTGTGGGTGATGAGGAGGACACGGTGGAGATAAATGATGATGTTATTCTTATGGGGTTAGATGAGTATTTAGCAAGGCGGTCACTTCATAATATCAGTGAAGAATTACGCAGGAAATTGGAATCAAAGTGGAGAAGACTCGCATACGAGAGGGCTAGATATGGTTTAGCCGTATCCGAGTTTGCAATAAAGTTGCAACACTATAAACTAAGATATTACAACAACTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

30.47

Weight (kDa)

6.36

Isoelectric Point (pI)

62.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 86 - 158 1.2e-06 Glabrous-enhancer-binding protein-like family, DBD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28081 FvH4_6g45821
prunus_persica Prupe.4G287400_v2.0.a1
rosa_laevigata RLG00000022475
rosa_multiflora Rmu_sc0002893.1_g000015
rosa_roxburghii Rroxscaffold_6G00388320
rosa_rugosa Rorug03G0291400
rosa_samantha Rh3AG334700 Rh3BG372400 Rh3CG368800 Rh3DG369700
rosa_wichuraiana Rw3G029420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 413
AciI CCGC 1 cut(s) 637
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 392
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 346
AgsI TTSAA 1 cut(s) 398
AhlI ACTAGT 1 cut(s) 503
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 3 cut(s) 147, 215, 230
AluI AGCT 3 cut(s) 147, 215, 230
AlwI GGATC 1 cut(s) 198
AoxI GGCC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 392
Asp700I GAANNNNTTC 2 cut(s) 148, 393
AspLEI GCGC 1 cut(s) 369
AspS9I GGNCC 1 cut(s) 24
AsuHPI GGTGA 3 cut(s) 274, 485, 578
BanI GGYRCC 1 cut(s) 413
BanII GRGCYC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 700
BccI CCATC 1 cut(s) 441
BceAI ACGGC 1 cut(s) 713
BcgI CGANNNNNNTGC 4 cut(s) 47, 81, 158, 192
BciT130I CCWGG 1 cut(s) 208
BciVI GTATCC 1 cut(s) 742
BcuI ACTAGT 1 cut(s) 503
BfaI CTAG 4 cut(s) 216, 504, 714, 787
BfuI GTATCC 1 cut(s) 742
BglII AGATCT 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 700
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 153, 243
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse3DI GCAATG 2 cut(s) 140, 300
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 2 cut(s) 153, 243
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMI GCAATG 2 cut(s) 140, 300
BseRI GAGGAG 2 cut(s) 143, 587
BshFI GGCC 1 cut(s) 25
BshNI GGYRCC 1 cut(s) 413
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 346
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 2 cut(s) 203, 236
BspACI CCGC 1 cut(s) 637
BspANI GGCC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 415
BspPI GGATC 1 cut(s) 198
BspQI GCTCTTC 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 413
BsrDI GCAATG 2 cut(s) 140, 300
BssECI CCNNGG 2 cut(s) 153, 243
BssMI GATC 2 cut(s) 203, 236
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 4 cut(s) 43, 93, 413, 583
Bst6I CTCTTC 3 cut(s) 108, 120, 154
BstDEI CTNAG 2 cut(s) 289, 767
BstDSI CCRYGG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 2 cut(s) 206, 239
BstMBI GATC 2 cut(s) 203, 236
BstMWI GCNNNNNNNGC 2 cut(s) 144, 221
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstV2I GAAGAC 1 cut(s) 700
BstX2I RGATCY 2 cut(s) 203, 236
BstYI RGATCY 2 cut(s) 203, 236
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 661
CfoI GCGC 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 24
Csp6I GTAC 1 cut(s) 448
CviJI RGCY 7 cut(s) 14, 25, 147, 215, 230, 713, 728
CviKI_1 RGCY 7 cut(s) 14, 25, 147, 215, 230, 713, 728
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 2 cut(s) 289, 767
DpnI GATC 2 cut(s) 205, 238
DpnII GATC 2 cut(s) 203, 236
Eam1104I CTCTTC 3 cut(s) 108, 120, 154
EarI CTCTTC 3 cut(s) 108, 120, 154
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 206
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 153
FaiI YATR 9 cut(s) 72, 177, 405, 425, 611, 648, 703, 720, 762
FaqI GGGAC 1 cut(s) 296
FokI GGATG 1 cut(s) 148
FriOI GRGCYC 1 cut(s) 16
FspBI CTAG 4 cut(s) 216, 504, 714, 787
GlaI GCGC 1 cut(s) 368
HaeIII GGCC 1 cut(s) 25
HhaI GCGC 1 cut(s) 369
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HinfI GANTC 5 cut(s) 51, 182, 536, 680, 696
HphI GGTGA 3 cut(s) 274, 485, 578
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 4 cut(s) 166, 377, 511, 736
Hpy188III TCNNGA 1 cut(s) 437
Hpy8I GTNNAC 1 cut(s) 524
Hpy99I CGWCG 3 cut(s) 69, 170, 173
HpyAV CCTTC 2 cut(s) 265, 526
HpyCH4III ACNGT 4 cut(s) 43, 93, 413, 583
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 4 cut(s) 138, 305, 743, 754
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 221
HpyF3I CTNAG 2 cut(s) 289, 767
HpySE526I ACGT 1 cut(s) 64
HspAI GCGC 1 cut(s) 367
Kzo9I GATC 2 cut(s) 203, 236
LguI GCTCTTC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 8 cut(s) 154, 193, 220, 237, 328, 422, 454, 655
LweI GCATC 1 cut(s) 170
MaeI CTAG 4 cut(s) 216, 504, 714, 787
MaeII ACGT 1 cut(s) 64
MaeIII GTNAC 2 cut(s) 52, 639
MalI GATC 2 cut(s) 205, 238
MboI GATC 2 cut(s) 203, 236
MboII GAAGA 6 cut(s) 125, 137, 141, 231, 671, 705
MflI RGATCY 2 cut(s) 203, 236
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 5 cut(s) 6, 18, 392, 662, 674
MlyI GAGTC 2 cut(s) 60, 690
MmeI TCCRAC 2 cut(s) 104, 189
MnlI CCTC 8 cut(s) 109, 121, 268, 296, 511, 565, 568, 702
MroXI GAANNNNTTC 2 cut(s) 148, 393
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MwoI GCNNNNNNNGC 2 cut(s) 144, 221
NdeII GATC 2 cut(s) 203, 236
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 2 cut(s) 52, 639
PciSI GCTCTTC 1 cut(s) 154
PdmI GAANNNNTTC 2 cut(s) 148, 393
PfeI GAWTC 3 cut(s) 182, 536, 680
PleI GAGTC 2 cut(s) 59, 690
PpsI GAGTC 2 cut(s) 59, 690
Psp6I CCWGG 1 cut(s) 206
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 24
PsuI RGATCY 2 cut(s) 203, 236
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SapI GCTCTTC 1 cut(s) 154
Sau3AI GATC 2 cut(s) 203, 236
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 2 cut(s) 60, 690
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 16
SetI ASST 6 cut(s) 39, 67, 149, 212, 217, 232
SfaNI GCATC 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SpeI ACTAGT 1 cut(s) 503
Sse9I AATT 5 cut(s) 6, 18, 392, 662, 674
SsiI CCGC 1 cut(s) 637
SspMI CTAG 4 cut(s) 216, 504, 714, 787
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 4 cut(s) 43, 93, 413, 583
TaiI ACGT 1 cut(s) 67
TaqI TCGA 2 cut(s) 458, 539
TasI AATT 5 cut(s) 6, 18, 392, 662, 674
TfiI GAWTC 3 cut(s) 182, 536, 680
TscAI CASTG 1 cut(s) 661
TseFI GTSAC 2 cut(s) 52, 639
Tsp45I GTSAC 2 cut(s) 52, 639
TspDTI ATGAA 4 cut(s) 126, 412, 557, 635
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 1 cut(s) 661
XapI RAATTY 1 cut(s) 392
XmnI GAANNNNTTC 2 cut(s) 148, 393
XspI CTAG 4 cut(s) 216, 504, 714, 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.