Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0017591

Physical Location & Seq

Genomic Coordinates Forward (+)

25195752 .. 25197366

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G287400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTTTCAGTCAGTCATCCTCATCATCCTATGAGTCATACTCTTCCTCTTCGTCTTTTGATGAAGACCACCAATCTGATTCATACGATGATGAACTGGAGGATGAACAACTTGCACCTGATTCACAAGAGTCGCCTACCTTGGTTGGATCCGACACCGAATACAGATGCGAATCGGAGCCTGATTCAGAGGCCGACTCTGCCAAAAAGACCAAGACCAAGACCAAGTCCAACACCACTACCAATGTTGAGGCAAAATCCAAAAACAAATCGCCTTCGTCTACCGCCGTTGCAAATGAGAAACGGCCCCGGGAGAAGCCAGAGGAAAAGGGCGGTGATGCCTCCAACAAGAAGAGGAAGAAGGCAGAAAATGAAACAAATCTGCAAACTGGTGGTGATGATGCTGTGGAGAAGGACAAGGAAATGATGATGAAGAAGAAGAAGAAGTCGAGGTCGTCTTCGTCTACTGCTGGTAATGCGAGAGTATGGAGCGAAAGGGATGAGCTTGTTATGGTGAAAGGTATAATCTCATTTCTAAAAAAGTTCTCGACATTTGATGGAAAAAAGTTCTACAATTGGATCAACAAGTACATCGAAGCGGACGTGTCAACAGGTCAAATAGCAGATAAAGTGTGTCGATTGAAGAAGAAATATCGTAACAACGAAGCCAACCGCGGGCCAAATGGGGAGGATCCTGTCTTCTCAAAGCCTCATGAGCAGAAATTGTTTGACCTATCAAAACAAGCATGGGGGAGTATTAGGTCTACCACTAATAATAATAATAATAATACTAATGCTGATATTAATGATGGTATAGTTGAAAAGGGTGCTGATGCTCAGAAAAAGGCAACGGATGTTGTTGATGATGCTCAGAAAAAGGTAACGGATGTTGTTGAGGATGCTGAGAAAAAGGCAACGGATGATGATGTTTTGCAGGAGAAGGAAGTATTGTTTGACGATAATCTAGTTATGGAAGCTTTTGATAAGTATTTAACAAGTCGTGGTTTAGATTTGAGGTGGTTTGGTCAAGACAAATTAGAGAGCTTGGAGAACAAGTGGAGAAAAATCAGAGTTGCTGAATCTACTTTTCGCTTACTGCAAGCCAAGTTTGATGTAAAATTGCATCAAATAGCGCTACATGCTTGCAACTTCTTTGATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

388

Amino Acids

43.71

Weight (kDa)

5.51

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28081 FvH4_6g45821
prunus_persica	Prupe.4G287400_v2.0.a1
rosa_laevigata	RLG00000022475
rosa_multiflora	Rmu_sc0002893.1_g000015
rosa_roxburghii	Rroxscaffold_6G00388320
rosa_rugosa	Rorug03G0291400
rosa_samantha	Rh3AG334700 Rh3BG372400 Rh3CG368800 Rh3DG369700
rosa_wichuraiana	Rw3G029420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	281, 464, 764
AccII	CGCG	1 cut(s)	675
AciI	CCGC	5 cut(s)	285, 333, 599, 673, 675
AclWI	GGATC	5 cut(s)	144, 157, 587, 686, 699
AfaI	GTAC	1 cut(s)	590
AfeI	AGCGCT	1 cut(s)	1134
AfiI	CCNNNNNNNGG	1 cut(s)	675
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	2 cut(s)	643, 821
AjiI	CACGTC	1 cut(s)	604
AluBI	AGCT	3 cut(s)	505, 977, 1044
AluI	AGCT	3 cut(s)	505, 977, 1044
AlwI	GGATC	5 cut(s)	144, 157, 587, 686, 699
Ama87I	CYCGRG	1 cut(s)	309
Aor51HI	AGCGCT	1 cut(s)	1134
AoxI	GGCC	3 cut(s)	192, 305, 677
AseI	ATTAAT	1 cut(s)	804
AspLEI	GCGC	1 cut(s)	1135
AspS9I	GGNCC	2 cut(s)	306, 677
AsuC2I	CCSGG	2 cut(s)	310, 311
AsuHPI	GGTGA	3 cut(s)	347, 407, 526
AvaI	CYCGRG	1 cut(s)	309
BamHI	GGATCC	2 cut(s)	149, 691
BbsI	GAAGAC	3 cut(s)	72, 450, 691
BccI	CCATC	2 cut(s)	551, 803
BceAI	ACGGC	2 cut(s)	272, 320
BcnI	CCSGG	2 cut(s)	310, 311
BfaI	CTAG	1 cut(s)	965
BfoI	RGCGCY	1 cut(s)	1136
Bme1390I	CCNGG	2 cut(s)	310, 311
BmeT110I	CYCGRG	1 cut(s)	309
BmgBI	CACGTC	1 cut(s)	604
BmgT120I	GGNCC	2 cut(s)	306, 677
BmiI	GGNNCC	4 cut(s)	151, 180, 308, 693
BmrFI	CCNGG	2 cut(s)	310, 311
BmsI	GCATC	7 cut(s)	158, 328, 391, 823, 856, 889, 1132
BpiI	GAAGAC	3 cut(s)	72, 450, 691
BplI	GAGNNNNNCTC	4 cut(s)	26, 58, 182, 214
BpmI	CTGGAG	1 cut(s)	119
BpuMI	CCSGG	2 cut(s)	310, 311
BsaBI	GATNNNNATC	1 cut(s)	172
BsaJI	CCNNGG	4 cut(s)	141, 308, 309, 673
BsaXI	ACNNNNNCTCC	2 cut(s)	1040, 1070
Bsc4I	CCNNNNNNNGG	1 cut(s)	675
Bse1I	ACTGG	2 cut(s)	102, 394
Bse8I	GATNNNNATC	1 cut(s)	172
BseDI	CCNNGG	4 cut(s)	141, 308, 309, 673
BseGI	GGATG	8 cut(s)	17, 26, 109, 505, 859, 892, 904, 925
BseJI	GATNNNNATC	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	675
BseMII	CTCAG	3 cut(s)	851, 884, 894
BseNI	ACTGG	2 cut(s)	102, 394
Bsh1236I	CGCG	1 cut(s)	675
BshFI	GGCC	3 cut(s)	194, 307, 679
BsiHKCI	CYCGRG	1 cut(s)	309
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	675
BsnI	GGCC	3 cut(s)	194, 307, 679
BsoBI	CYCGRG	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	149, 579, 691
BspACI	CCGC	5 cut(s)	285, 333, 599, 673, 675
BspANI	GGCC	3 cut(s)	194, 307, 679
BspCNI	CTCAG	3 cut(s)	850, 883, 895
BspFNI	CGCG	1 cut(s)	675
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	4 cut(s)	151, 180, 308, 693
BspPI	GGATC	5 cut(s)	144, 157, 587, 686, 699
BsrI	ACTGG	2 cut(s)	102, 394
BssECI	CCNNGG	4 cut(s)	141, 308, 309, 673
BssMI	GATC	3 cut(s)	149, 579, 691
BssT1I	CCWWGG	1 cut(s)	141
Bst6I	CTCTTC	3 cut(s)	49, 55, 347
BstC8I	GCNNGC	3 cut(s)	677, 1101, 1144
BstDEI	CTNAG	3 cut(s)	837, 870, 903
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	8 cut(s)	17, 26, 109, 505, 859, 892, 904, 925
BstFNI	CGCG	1 cut(s)	675
BstH2I	RGCGCY	1 cut(s)	1136
BstHHI	GCGC	1 cut(s)	1135
BstKTI	GATC	3 cut(s)	152, 582, 694
BstMBI	GATC	3 cut(s)	149, 579, 691
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 476, 715, 1139
BstNSI	RCATGY	1 cut(s)	1142
BstSCI	CCNGG	2 cut(s)	308, 309
BstUI	CGCG	1 cut(s)	675
BstV2I	GAAGAC	3 cut(s)	72, 450, 691
BstX2I	RGATCY	2 cut(s)	149, 691
BstYI	RGATCY	2 cut(s)	149, 691
BsuRI	GGCC	3 cut(s)	194, 307, 679
BtgI	CCRYGG	1 cut(s)	673
BtrI	CACGTC	1 cut(s)	604
BtsCI	GGATG	8 cut(s)	17, 26, 109, 505, 859, 892, 904, 925
Cac8I	GCNNGC	3 cut(s)	677, 1101, 1144
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	1 cut(s)	1135
Cfr13I	GGNCC	2 cut(s)	306, 677
Cfr42I	CCGCGG	1 cut(s)	676
Cfr9I	CCCGGG	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	589
CviAII	CATG	3 cut(s)	713, 747, 1139
CviQI	GTAC	1 cut(s)	589
DdeI	CTNAG	3 cut(s)	837, 870, 903
DpnI	GATC	3 cut(s)	151, 581, 693
DpnII	GATC	3 cut(s)	149, 579, 691
Eam1104I	CTCTTC	3 cut(s)	49, 55, 347
EarI	CTCTTC	3 cut(s)	49, 55, 347
Eco130I	CCWWGG	1 cut(s)	141
Eco47III	AGCGCT	1 cut(s)	1134
Eco88I	CYCGRG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	3 cut(s)	716, 750, 1142
FatI	CATG	3 cut(s)	712, 746, 1138
FauI	CCCGC	1 cut(s)	668
FblI	GTMKAC	3 cut(s)	281, 464, 764
FokI	GGATG	8 cut(s)	4, 13, 116, 512, 866, 899, 911, 932
FspBI	CTAG	1 cut(s)	965
GlaI	GCGC	1 cut(s)	1134
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	1136
HaeIII	GGCC	3 cut(s)	194, 307, 679
HapII	CCGG	1 cut(s)	310
HhaI	GCGC	1 cut(s)	1135
Hin1II	CATG	3 cut(s)	716, 750, 1142
Hin6I	GCGC	1 cut(s)	1133
HinP1I	GCGC	1 cut(s)	1133
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HindIII	AAGCTT	1 cut(s)	975
HinfI	GANTC	8 cut(s)	35, 80, 122, 131, 173, 185, 197, 1079
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	3 cut(s)	347, 407, 526
Hpy166II	GTNNAC	4 cut(s)	282, 465, 609, 765
Hpy188I	TCNGA	7 cut(s)	79, 154, 178, 190, 840, 873, 1070
Hpy188III	TCNNGA	3 cut(s)	547, 713, 1028
Hpy8I	GTNNAC	4 cut(s)	282, 465, 609, 765
HpyAV	CCTTC	4 cut(s)	285, 355, 406, 934
HpyCH4IV	ACGT	1 cut(s)	603
HpyCH4V	TGCA	7 cut(s)	116, 293, 385, 934, 1099, 1123, 1146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 476, 715, 1139
HpyF3I	CTNAG	3 cut(s)	837, 870, 903
HpySE526I	ACGT	1 cut(s)	603
Hsp92II	CATG	3 cut(s)	716, 750, 1142
HspAI	GCGC	1 cut(s)	1133
KspI	CCGCGG	1 cut(s)	676
Kzo9I	GATC	3 cut(s)	149, 579, 691
LmnI	GCTCC	2 cut(s)	178, 489
LweI	GCATC	7 cut(s)	158, 328, 391, 823, 856, 889, 1132
MaeI	CTAG	1 cut(s)	965
MaeII	ACGT	1 cut(s)	603
MaeIII	GTNAC	2 cut(s)	656, 880
MalI	GATC	3 cut(s)	151, 581, 693
MboI	GATC	3 cut(s)	149, 579, 691
MfeI	CAATTG	1 cut(s)	574
MflI	RGATCY	2 cut(s)	149, 691
MluCI	AATT	4 cut(s)	574, 722, 1034, 1118
MlyI	GAGTC	3 cut(s)	44, 140, 191
MmeI	TCCRAC	4 cut(s)	127, 177, 255, 369
MseI	TTAA	2 cut(s)	804, 992
MspA1I	CMGCKG	1 cut(s)	675
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	2 cut(s)	310, 311
MunI	CAATTG	1 cut(s)	574
MvnI	CGCG	1 cut(s)	675
MwoI	GCNNNNNNNGC	4 cut(s)	200, 476, 715, 1139
NciI	CCSGG	2 cut(s)	310, 311
NdeII	GATC	3 cut(s)	149, 579, 691
NlaIII	CATG	3 cut(s)	716, 750, 1142
NlaIV	GGNNCC	4 cut(s)	151, 180, 308, 693
NspI	RCATGY	1 cut(s)	1142
PagI	TCATGA	1 cut(s)	712
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PfeI	GAWTC	5 cut(s)	80, 122, 173, 185, 1079
PflFI	GACNNNGTC	1 cut(s)	226
PleI	GAGTC	3 cut(s)	43, 139, 191
PpsI	GAGTC	3 cut(s)	43, 139, 191
PshBI	ATTAAT	1 cut(s)	804
PspN4I	GGNNCC	4 cut(s)	151, 180, 308, 693
PspPI	GGNCC	2 cut(s)	306, 677
PsuI	RGATCY	2 cut(s)	149, 691
PsyI	GACNNNGTC	1 cut(s)	226
RsaI	GTAC	1 cut(s)	590
RsaNI	GTAC	1 cut(s)	589
SacII	CCGCGG	1 cut(s)	676
SaqAI	TTAA	2 cut(s)	804, 992
Sau3AI	GATC	3 cut(s)	149, 579, 691
Sau96I	GGNCC	2 cut(s)	306, 677
SchI	GAGTC	3 cut(s)	44, 140, 191
ScrFI	CCNGG	2 cut(s)	310, 311
SfaNI	GCATC	7 cut(s)	158, 328, 391, 823, 856, 889, 1132
Sfr303I	CCGCGG	1 cut(s)	676
SgrBI	CCGCGG	1 cut(s)	676
SmaI	CCCGGG	1 cut(s)	311
Sse9I	AATT	4 cut(s)	574, 722, 1034, 1118
SsiI	CCGC	5 cut(s)	285, 333, 599, 673, 675
SspMI	CTAG	1 cut(s)	965
StyD4I	CCNGG	2 cut(s)	308, 309
StyI	CCWWGG	1 cut(s)	141
TaiI	ACGT	1 cut(s)	606
TaqI	TCGA	4 cut(s)	449, 548, 594, 637
TasI	AATT	4 cut(s)	574, 722, 1034, 1118
TatI	WGTACW	1 cut(s)	588
TfiI	GAWTC	5 cut(s)	80, 122, 173, 185, 1079
Tru1I	TTAA	2 cut(s)	804, 992
Tru9I	TTAA	2 cut(s)	804, 992
TspDTI	ATGAA	6 cut(s)	72, 78, 108, 120, 387, 446
TspGWI	ACGGA	3 cut(s)	866, 899, 932
TspMI	CCCGGG	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	226
VspI	ATTAAT	1 cut(s)	804
XceI	RCATGY	1 cut(s)	1142
XmaI	CCCGGG	1 cut(s)	309
XmiI	GTMKAC	3 cut(s)	281, 464, 764
XspI	CTAG	1 cut(s)	965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.