Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0017591

Physical Location & Seq

Genomic Coordinates Reverse (-)

47028726 .. 47029596

Gene Structure 871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG372400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCAACCTCACAACAATATCGTTATTCCTCTCCGCCAACTGCATTACAGTTTTGTCACTCAGATAGTGATGACGACGATATTGATACGAAGGAAGATGAGCAAGACAACAATTCTCCATCCTTAGTGGGCTCCGACATGGAGTACCAGTGTGAATCCGATACTGAATCGGAAAGTGCTGATTGTTCTGAAAGAAAATTCCAGTCTAGCAGTACCAAAGCAAAGCAGAAGATGAAGTCTTCCGTGCGAGTGCGAGTATGGGAGGAGGAGGAGGAGATTACCCTTTTAAAAGGTTTAATTTCACATAAATCAGGAAATTTCAATATTGAAATCACCAAGTCACTCCCCAACAAGTCAAAAACGCAAATAAAGGATAAAGTCAGGCGATTGAAGGAGAAGTGTCAAAAGTGGAAGGCCGGCAAATTTGCAAGTCCCCATGAGAAGAGGTTATACAACTTATCAAAGAAAATTTGGGAAGTTGATCTTACAAGAGGTGAACACGAGAAAAAATCGATTAATGCTGATGCTGTTGGTGATGATAAATCGAAAACCACTAGTGATACGGAGGACATGGTGCATGTAAATGATGATGTTATTATCAAGGCGTTTGATGAATATTTATTGCGCCGGTCGCTTAAGATTAATGAAGAAGAAGAAAAAGAACGCTTGGAATTGCTGGACAAGTGGAGGAAAGTCGCATATAATAAAGCTCGACATAAGTTGGCCATAGCCGAGTTTACACTAGAGTTGCAACAATATAAACTCGATGGCTACAACAAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

261

Amino Acids

30.32

Weight (kDa)

5.98

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	85 - 159	5.2e-11	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28081 FvH4_6g45821
prunus_persica	Prupe.4G287400_v2.0.a1
rosa_laevigata	RLG00000022475
rosa_multiflora	Rmu_sc0002893.1_g000015
rosa_roxburghii	Rroxscaffold_6G00388320
rosa_rugosa	Rorug03G0291400
rosa_samantha	Rh3AG334700 Rh3BG372400 Rh3CG368800 Rh3DG369700
rosa_wichuraiana	Rw3G029420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	4 cut(s)	197, 316, 422, 468
AfaI	GTAC	2 cut(s)	146, 214
AflII	CTTAAG	1 cut(s)	635
AgsI	TTSAA	3 cut(s)	322, 329, 391
AhlI	ACTAGT	1 cut(s)	554
AluBI	AGCT	1 cut(s)	710
AluI	AGCT	1 cut(s)	710
AoxI	GGCC	2 cut(s)	414, 723
ApoI	RAATTY	4 cut(s)	197, 316, 422, 468
AseI	ATTAAT	2 cut(s)	516, 642
AspLEI	GCGC	1 cut(s)	627
AsuHPI	GGTGA	3 cut(s)	325, 506, 545
BalI	TGGCCA	1 cut(s)	725
BanII	GRGCYC	1 cut(s)	134
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
BauI	CACGAG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	231
BccI	CCATC	2 cut(s)	127, 761
BcuI	ACTAGT	1 cut(s)	554
BfaI	CTAG	4 cut(s)	207, 555, 743, 784
BfrI	CTTAAG	1 cut(s)	635
BmiI	GGNNCC	1 cut(s)	133
BmsI	GCATC	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	231
Bsa29I	ATCGAT	1 cut(s)	512
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bse118I	RCCGGY	2 cut(s)	416, 627
Bse1I	ACTGG	2 cut(s)	148, 202
BseCI	ATCGAT	1 cut(s)	512
BseGI	GGATG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	148, 202
BseRI	GAGGAG	4 cut(s)	278, 281, 284, 287
Bsh1285I	CGRYCG	1 cut(s)	632
BshFI	GGCC	2 cut(s)	416, 725
BshVI	ATCGAT	1 cut(s)	512
BsiEI	CGRYCG	1 cut(s)	632
BsiSI	CCGG	2 cut(s)	417, 628
BslFI	GGGAC	1 cut(s)	417
BsmFI	GGGAC	1 cut(s)	417
BsnI	GGCC	2 cut(s)	416, 725
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	1 cut(s)	481
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	416, 725
BspCNI	CTCAG	1 cut(s)	74
BspDI	ATCGAT	1 cut(s)	512
BspLI	GGNNCC	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	635
BsrFI	RCCGGY	2 cut(s)	416, 627
BsrI	ACTGG	2 cut(s)	148, 202
BssAI	RCCGGY	2 cut(s)	416, 627
BssMI	GATC	1 cut(s)	481
BssSI	CACGAG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	51
Bst6I	CTCTTC	1 cut(s)	437
BstAFI	CTTAAG	1 cut(s)	635
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	61, 124
BstF5I	GGATG	1 cut(s)	119
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	1 cut(s)	484
BstMBI	GATC	1 cut(s)	481
BstMCI	CGRYCG	1 cut(s)	632
BstMWI	GCNNNNNNNGC	1 cut(s)	631
BstNSI	RCATGY	1 cut(s)	581
BstV2I	GAAGAC	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	512
BsuRI	GGCC	2 cut(s)	416, 725
BsuTUI	ATCGAT	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	418
CfoI	GCGC	1 cut(s)	627
Cfr10I	RCCGGY	2 cut(s)	416, 627
ClaI	ATCGAT	1 cut(s)	512
Csp6I	GTAC	2 cut(s)	145, 213
CviAII	CATG	4 cut(s)	139, 437, 571, 578
CviJI	RGCY	6 cut(s)	132, 416, 710, 725, 731, 771
CviKI_1	RGCY	6 cut(s)	132, 416, 710, 725, 731, 771
CviQI	GTAC	2 cut(s)	145, 213
DdeI	CTNAG	2 cut(s)	61, 124
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
DraI	TTTAAA	1 cut(s)	288
EaeI	YGGCCR	1 cut(s)	723
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
EciI	GGCGGA	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	134
EcoT38I	GRGCYC	1 cut(s)	134
FaeI	CATG	4 cut(s)	142, 440, 574, 581
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	1 cut(s)	417
FatI	CATG	4 cut(s)	138, 436, 570, 577
FokI	GGATG	1 cut(s)	106
FriOI	GRGCYC	1 cut(s)	134
FspBI	CTAG	4 cut(s)	207, 555, 743, 784
GlaI	GCGC	1 cut(s)	626
HaeIII	GGCC	2 cut(s)	416, 725
HapII	CCGG	2 cut(s)	417, 628
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	4 cut(s)	142, 440, 574, 581
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HinfI	GANTC	2 cut(s)	155, 167
HpaII	CCGG	2 cut(s)	417, 628
HphI	GGTGA	3 cut(s)	325, 506, 545
Hpy166II	GTNNAC	2 cut(s)	497, 738
Hpy188I	TCNGA	5 cut(s)	64, 136, 160, 172, 190
Hpy188III	TCNNGA	1 cut(s)	312
Hpy8I	GTNNAC	2 cut(s)	497, 738
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	85, 385, 406
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	44, 428, 577, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	631
HpyF3I	CTNAG	2 cut(s)	61, 124
Hsp92II	CATG	4 cut(s)	142, 440, 574, 581
HspAI	GCGC	1 cut(s)	625
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	7 cut(s)	161, 215, 297, 367, 430, 641, 662
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	4 cut(s)	207, 555, 743, 784
MaeIII	GTNAC	2 cut(s)	56, 339
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	7 cut(s)	107, 231, 241, 454, 659, 662, 665
MhlI	GDGCHC	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	725
MluCI	AATT	7 cut(s)	112, 197, 297, 316, 422, 468, 671
MluNI	TGGCCA	1 cut(s)	725
MmeI	TCCRAC	1 cut(s)	159
Mox20I	TGGCCA	1 cut(s)	725
MroNI	GCCGGC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	725
MseI	TTAA	5 cut(s)	287, 296, 516, 636, 642
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	725
MspCI	CTTAAG	1 cut(s)	635
MspI	CCGG	2 cut(s)	417, 628
MwoI	GCNNNNNNNGC	1 cut(s)	631
NaeI	GCCGGC	1 cut(s)	418
NdeII	GATC	1 cut(s)	481
NgoMIV	GCCGGC	1 cut(s)	416
NlaIII	CATG	4 cut(s)	142, 440, 574, 581
NlaIV	GGNNCC	1 cut(s)	133
NmeAIII	GCCGAG	1 cut(s)	757
NmuCI	GTSAC	2 cut(s)	56, 339
NspI	RCATGY	1 cut(s)	581
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	2 cut(s)	155, 167
PshBI	ATTAAT	2 cut(s)	516, 642
PspN4I	GGNNCC	1 cut(s)	133
RsaI	GTAC	2 cut(s)	146, 214
RsaNI	GTAC	2 cut(s)	145, 213
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	5 cut(s)	287, 296, 516, 636, 642
Sau3AI	GATC	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	5 cut(s)	11, 295, 449, 496, 712
SfaNI	GCATC	1 cut(s)	514
SmiMI	CAYNNNNRTG	1 cut(s)	582
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
SpeI	ACTAGT	1 cut(s)	554
Sse9I	AATT	7 cut(s)	112, 197, 297, 316, 422, 468, 671
SsiI	CCGC	1 cut(s)	35
SspI	AATATT	2 cut(s)	325, 617
SspMI	CTAG	4 cut(s)	207, 555, 743, 784
TaaI	ACNGT	1 cut(s)	51
TaqI	TCGA	4 cut(s)	512, 545, 712, 765
TasI	AATT	7 cut(s)	112, 197, 297, 316, 422, 468, 671
TfiI	GAWTC	2 cut(s)	155, 167
Tru1I	TTAA	5 cut(s)	287, 296, 516, 636, 642
Tru9I	TTAA	5 cut(s)	287, 296, 516, 636, 642
TscAI	CASTG	1 cut(s)	155
TseFI	GTSAC	2 cut(s)	56, 339
Tsp45I	GTSAC	2 cut(s)	56, 339
TspDTI	ATGAA	3 cut(s)	248, 627, 660
TspGWI	ACGGA	2 cut(s)	232, 578
TspRI	CASTG	1 cut(s)	155
Vha464I	CTTAAG	1 cut(s)	635
VspI	ATTAAT	2 cut(s)	516, 642
XapI	RAATTY	4 cut(s)	197, 316, 422, 468
XceI	RCATGY	1 cut(s)	581
XspI	CTAG	4 cut(s)	207, 555, 743, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.