Rorug03G0291400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0017591
Physical Location & Seq
Reverse (-)
29705009 .. 29707372
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0291400.1

Sequence Viewer

Length: 2364 bp
ATGGATGTTGTCGCTTCTTTGCTGCCTACTTGTGTCTCTGATGACATGAATGCTTTGCTCACTTGTGATGTTACAGAGAATGAGGTTTTCAAAGCATTGAAACAAATGCATCCGGCTAAGGCACCTGGCCCGGATGGCTTTGCGCCTTGCTTCTACCAGCATTTCTGGCCTTTAGTGGGAGGGGACGTTACCAGGGCTGTCCGTTGTTTTTTGGAGTCTGATGATATGATGAAGCAGGTAAATGGTACGAATGTTACTTTAATCCCTAAAGTGAAAGATCTGGAGAGCATTAGTCAGCTTCGACCAATCAGTCTATGTAACGTCCTCTACAAGCTTGGGTCTAAGGTTCTCGCTAACAGGATCAAGCCGCTTTTGAATGGTATGATCTCCCCATTTCAAAGTGCGTTTGTCCCTGGAAGGTTGATTTCTGACAACTCATTGACGGCCTTTGAAATAGCCCATTTCTTGAAAAATCGAAGACGTGGACATGTTGGTTTTGGAGCTCTGAAGCTTGATATGAGCAAGGCATATGATCTGGTTGAATGGAGTTTTCTGAAAGCAGTTCTTTTACAGCTTGGCTTCAGTCCTATCTGGGTTACTTGGGTGATGAGATGTATTACTACTGTGTCTTATTCTTTTGTTATCAATGGGACTCTAAGAGGAAGAATTGTACCTTCTAGAGGATTAAGACAGGGTGACTCTATCTCACCCTATCTTTTTCTTTTTTGTGCGGAAGCTTTATCCAGACTTATCCTGCATGCGGAAGAGTCAGAGCTGATTTATGGGGTTCAAATTTGTACAGGTGCTCCTCCTATTTCTCACCTCTTCTTCGCTGATGACTCCTTTATTTTTTTCAAAGCAGAAATGGAAGAGTGTCTAGTGTTGAAGAATATTTTCAAGAAGTATGAGGAGGCATCTGGGCAGTGTATTAATTTTCAGAAGAGTTCAGTGGTTTTCAGTAAAAACGTGGAAAGGGCTAAGCAAGATGTTCTGGCCGCAAGTTTGGATGTTGAGCGGGTTGATAAACATGACAAATATCTTGGCCTCCCCATTGAAATTAGTTATTCAAAGTCTGAGGCTTTTGATTACTTAACAGAAAGGGTCCGTAAGCGTACAAGAGGATGGAGAGAGAAGATGTTGAGTGCTGCAGGGAAGGAAATTATGATCAAGGCTGTTACACAGTCTATCCCTACTTACGTAATGAGTTGCTTTGAGTTACCGCAACACTTGTGCCAGGAGATGCATAGCTTAATGGCAAAATTCTGGTGGGGTGACAAGTTGAACGATAGGAAAATCCATTGGCTAGCTTGGGAGAAGCTTTGTTTGCCTAAGACAGAAGGGGGATTAGGGTTTCGGAATATGGTTCTATTTAATCAGGTGTTGCTTGCTAAGCAAGGGTGGAGAATCATACAAAACCCTACCTCCCTTATTGCTTCACTCTATAAAGCAAAATATTTCCCGGATTGTAGTTTTTTGGATGCTGGGTTGGTGGGTGGAGCTTCATATGCCTGGAGGAGTATCATGCATGGACGAGAATTGCTGAAGAAAGGGCTACGGTTCCAGGTTGGTAATGGTTCTAATATTTCGGTTTGGTCTGATCCGTGGATGCCTCTTCCCTTCAGTTTTAAGCCCTTCACTAGACCCCCGGATGGATTAGATAATTTACGGGTGGCTGACTTAATTGGTAGTGATCTGCATGAGTGGAATTTTGCGGTGCTACAAGAGCTATTTACGCCTTCAGAAGTTGAAATAATAGGGCGCATTCCTCTAAGTACGAGTGGTCCAGAGGACAGATTAACATGGTACTATGACAAGAAGGGCTGTTATAGTGTTCGGTCTGGATATCATGTGGCTCGGAATGCAGTTGATCGAGTATCTAGGGCGTCTGCATCTAATGGTTCTTTTGGGGTCAATAGTAAATTCTGGAGAAGACTCTGGCATGCATGTACACCTCCTAAGGTACGGTCCTTTATGTGGAGAGTTTTAAAAGGTATTCTACCTACTAAAGTTGCCCTTGCACGACGTGTCTCTCTCCCACATATGAAATGTGTTCTATGCAATAGTTCAATTGAGGATGGCATTCATCTTTTTAAGGATTGTGACATTGCTGGCGATACTTGGTTGGCTAGTAACTTGGGTGTGCATGTGAAGAATGTTCCTGGACGTCATTTGGAGGAATGGGTTCTTAATGTCATGGAATTATTGCATGGAGGTCAATTTGAGTTGTTTTGCATGCTCATGTGGTCCTATGGACTGAGAGGAACAATGTCCTTTGGCAGGGCACGTGCTTCAATGCTTCTAGTGCAGCACAGTGGGCTTCGAAGTTCCTGGAGGATTTTCATAAACATCATCCGGTTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

787

Amino Acids

89.11

Weight (kDa)

9.19

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 90 - 349 4.6e-26 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 609 - 707 1.1e-14 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017591)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g28081 FvH4_6g45821
prunus_persica Prupe.4G287400_v2.0.a1
rosa_laevigata RLG00000022475
rosa_multiflora Rmu_sc0002893.1_g000015
rosa_roxburghii Rroxscaffold_6G00388320
rosa_rugosa Rorug03G0291400
rosa_samantha Rh3AG334700 Rh3BG372400 Rh3CG368800 Rh3DG369700
rosa_wichuraiana Rw3G029420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 309
AatII GACGTC 1 cut(s) 2167
Acc36I ACCTGC 1 cut(s) 226
AccB1I GGYRCC 1 cut(s) 121
AccBSI CCGCTC 1 cut(s) 1015
AciI CCGC 7 cut(s) 368, 731, 761, 996, 1015, 1220, 1712
AclWI GGATC 2 cut(s) 368, 1592
AcoI YGGCCR 1 cut(s) 993
AcsI RAATTY 4 cut(s) 792, 1259, 1705, 1919
AcuI CTGAAG 5 cut(s) 527, 565, 1562, 1603, 1722
AcvI CACGTG 1 cut(s) 2285
AcyI GRCGYC 2 cut(s) 1883, 2164
AdeI CACNNNGTG 1 cut(s) 2024
AfaI GTAC 8 cut(s) 247, 672, 799, 1114, 1774, 1805, 1948, 1962
AfiI CCNNNNNNNGG 6 cut(s) 176, 680, 760, 1649, 1974, 2277
AflIII ACRYGT 2 cut(s) 487, 2023
AjiI CACGTC 2 cut(s) 482, 2024
AjnI CCWGG 8 cut(s) 124, 191, 412, 1233, 1508, 1560, 2158, 2327
Alw21I GWGCWC 2 cut(s) 505, 808
Alw26I GTCTC 2 cut(s) 40, 2032
AlwI GGATC 2 cut(s) 368, 1592
AoxI GGCC 5 cut(s) 127, 167, 444, 993, 1042
ApeKI GCWGC 3 cut(s) 22, 1145, 2305
ApoI RAATTY 4 cut(s) 792, 1259, 1705, 1919
AseI ATTAAT 1 cut(s) 930
Asp700I GAANNNNTTC 2 cut(s) 893, 2181
AspLEI GCGC 2 cut(s) 145, 1761
AspS9I GGNCC 5 cut(s) 128, 1102, 1781, 1965, 2244
AsuC2I CCSGG 3 cut(s) 131, 1460, 1646
AsuHPI GGTGA 5 cut(s) 616, 699, 707, 812, 1283
AsuII TTCGAA 1 cut(s) 2320
AsuNHI GCTAGC 1 cut(s) 1303
AvaII GGWCC 4 cut(s) 1102, 1781, 1965, 2244
AxyI CCTNAGG 1 cut(s) 1956
BaeGI GKGCMC 1 cut(s) 2284
BaeI ACNNNNGTAYC 2 cut(s) 237, 270
BanI GGYRCC 1 cut(s) 121
BanII GRGCYC 1 cut(s) 505
BbrPI CACGTG 1 cut(s) 2285
BbsI GAAGAC 2 cut(s) 484, 1936
Bbv12I GWGCWC 2 cut(s) 505, 808
BbvI GCAGC 3 cut(s) 9, 1132, 2317
BccI CCATC 4 cut(s) 128, 1116, 1643, 2069
BceAI ACGGC 1 cut(s) 459
BciT130I CCWGG 8 cut(s) 126, 193, 414, 1235, 1510, 1562, 2160, 2329
BclI TGATCA 1 cut(s) 1164
BcnI CCSGG 3 cut(s) 131, 1460, 1646
BcoDI GTCTC 2 cut(s) 40, 2032
BfaI CTAG 7 cut(s) 678, 878, 1304, 1638, 1878, 2127, 2300
BfmI CTRYAG 1 cut(s) 1146
BfuAI ACCTGC 1 cut(s) 226
BglI GCCNNNNNGGC 1 cut(s) 135
BglII AGATCT 1 cut(s) 277
BisI GCNGC 5 cut(s) 23, 368, 996, 1146, 2306
BlpI GCTNAGC 2 cut(s) 978, 1389
BlsI GCNGC 5 cut(s) 24, 369, 997, 1147, 2307
Bme18I GGWCC 4 cut(s) 1102, 1781, 1965, 2244
BmgBI CACGTC 2 cut(s) 482, 2024
BmgT120I GGNCC 5 cut(s) 128, 1102, 1781, 1965, 2244
BmiI GGNNCC 3 cut(s) 123, 1103, 1559
BmsI GCATC 6 cut(s) 118, 923, 1230, 1468, 1596, 1898
BmtI GCTAGC 1 cut(s) 1307
BpiI GAAGAC 2 cut(s) 484, 1936
BpmI CTGGAG 4 cut(s) 302, 1531, 1945, 2350
Bpu10I CCTNAGC 1 cut(s) 117
Bpu1102I GCTNAGC 2 cut(s) 978, 1389
Bpu14I TTCGAA 1 cut(s) 2320
BpuMI CCSGG 3 cut(s) 131, 1460, 1646
BsaAI YACGTR 2 cut(s) 1198, 2285
BsaHI GRCGYC 2 cut(s) 1883, 2164
BsaJI CCNNGG 4 cut(s) 192, 412, 1601, 1644
BsaWI WCCGGW 1 cut(s) 2352
BsaXI ACNNNNNCTCC 6 cut(s) 171, 201, 790, 820, 1406, 1436
Bsc4I CCNNNNNNNGG 6 cut(s) 176, 680, 760, 1649, 1974, 2277
Bse21I CCTNAGG 1 cut(s) 1956
Bse3DI GCAATG 1 cut(s) 2103
BseBI CCWGG 8 cut(s) 126, 193, 414, 1235, 1510, 1562, 2160, 2329
BseDI CCNNGG 4 cut(s) 192, 412, 1601, 1644
BseLI CCNNNNNNNGG 6 cut(s) 176, 680, 760, 1649, 1974, 2277
BseMI GCAATG 1 cut(s) 2103
BseMII CTCAG 2 cut(s) 1065, 2246
BseRI GAGGAG 3 cut(s) 798, 923, 1528
BseSI GKGCMC 1 cut(s) 2284
BseXI GCAGC 3 cut(s) 9, 1132, 2317
BseYI CCCAGC 1 cut(s) 1481
BsgI GTGCAG 1 cut(s) 2324
BshFI GGCC 5 cut(s) 129, 169, 446, 995, 1044
BshNI GGYRCC 1 cut(s) 121
BsiHKAI GWGCWC 2 cut(s) 505, 808
BsiSI CCGG 5 cut(s) 113, 131, 1460, 1646, 2353
BslFI GGGAC 3 cut(s) 197, 395, 664
BslI CCNNNNNNNGG 6 cut(s) 176, 680, 760, 1649, 1974, 2277
BsmAI GTCTC 2 cut(s) 40, 2032
BsmFI GGGAC 3 cut(s) 197, 395, 664
BsmI GAATGC 4 cut(s) 55, 1761, 1864, 2079
BsnI GGCC 5 cut(s) 129, 169, 446, 995, 1044
Bsp119I TTCGAA 1 cut(s) 2320
Bsp1286I GDGCHC 3 cut(s) 505, 808, 2284
Bsp1407I TGTACA 2 cut(s) 797, 1946
Bsp143I GATC 8 cut(s) 277, 360, 384, 532, 1164, 1597, 1690, 1867
Bsp1720I GCTNAGC 2 cut(s) 978, 1389
BspACI CCGC 7 cut(s) 368, 731, 761, 996, 1015, 1220, 1712
BspANI GGCC 5 cut(s) 129, 169, 446, 995, 1044
BspCNI CTCAG 2 cut(s) 1066, 2247
BspLI GGNNCC 3 cut(s) 123, 1103, 1559
BspMAI CTGCAG 1 cut(s) 1150
BspMI ACCTGC 1 cut(s) 226
BspOI GCTAGC 1 cut(s) 1307
BspPI GGATC 2 cut(s) 368, 1592
BspT104I TTCGAA 1 cut(s) 2320
BspT107I GGYRCC 1 cut(s) 121
BsrBI CCGCTC 1 cut(s) 1015
BsrDI GCAATG 1 cut(s) 2103
BsrGI TGTACA 2 cut(s) 797, 1946
BssECI CCNNGG 4 cut(s) 192, 412, 1601, 1644
BssMI GATC 8 cut(s) 277, 360, 384, 532, 1164, 1597, 1690, 1867
BssNI GRCGYC 2 cut(s) 1883, 2164
Bst2UI CCWGG 8 cut(s) 126, 193, 414, 1235, 1510, 1562, 2160, 2329
Bst4CI ACNGT 5 cut(s) 625, 1182, 1557, 1965, 2312
Bst6I CTCTTC 5 cut(s) 759, 830, 864, 935, 1617
BstACI GRCGYC 2 cut(s) 1883, 2164
BstAUI TGTACA 2 cut(s) 797, 1946
BstBAI YACGTR 2 cut(s) 1198, 2285
BstBI TTCGAA 1 cut(s) 2320
BstC8I GCNNGC 6 cut(s) 759, 1305, 1386, 1941, 2110, 2234
BstDSI CCRYGG 1 cut(s) 1601
BstENI CCTNNNNNAGG 2 cut(s) 678, 2275
BstHHI GCGC 2 cut(s) 145, 1761
BstKTI GATC 8 cut(s) 280, 363, 387, 535, 1167, 1600, 1693, 1870
BstMAI GTCTC 2 cut(s) 40, 2032
BstMBI GATC 8 cut(s) 277, 360, 384, 532, 1164, 1597, 1690, 1867
BstNI CCWGG 8 cut(s) 126, 193, 414, 1235, 1510, 1562, 2160, 2329
BstNSI RCATGY 6 cut(s) 491, 761, 1943, 1947, 2147, 2236
BstSFI CTRYAG 1 cut(s) 1146
BstSLI GKGCMC 1 cut(s) 2284
BstSNI TACGTA 1 cut(s) 1198
BstV1I GCAGC 3 cut(s) 9, 1132, 2317
BstV2I GAAGAC 2 cut(s) 484, 1936
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu36I CCTNAGG 1 cut(s) 1956
BsuRI GGCC 5 cut(s) 129, 169, 446, 995, 1044
BtgI CCRYGG 1 cut(s) 1601
BtrI CACGTC 2 cut(s) 482, 2024
BtsI GCAGTG 1 cut(s) 929
BtsIMutI CAGTG 3 cut(s) 929, 954, 2317
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 6 cut(s) 759, 1305, 1386, 1941, 2110, 2234
CfoI GCGC 2 cut(s) 145, 1761
Cfr13I GGNCC 5 cut(s) 128, 1102, 1781, 1965, 2244
CseI GACGC 1 cut(s) 1872
Csp6I GTAC 8 cut(s) 246, 671, 798, 1113, 1773, 1804, 1947, 1961
CviQI GTAC 8 cut(s) 246, 671, 798, 1113, 1773, 1804, 1947, 1961
DpnI GATC 8 cut(s) 279, 362, 386, 534, 1166, 1599, 1692, 1869
DpnII GATC 8 cut(s) 277, 360, 384, 532, 1164, 1597, 1690, 1867
DraI TTTAAA 1 cut(s) 1986
DraIII CACNNNGTG 1 cut(s) 2024
DrdI GACNNNNNNGTC 1 cut(s) 309
DseDI GACNNNNNNGTC 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 993
Eam1104I CTCTTC 5 cut(s) 759, 830, 864, 935, 1617
EarI CTCTTC 5 cut(s) 759, 830, 864, 935, 1617
Ecl136II GAGCTC 1 cut(s) 503
Eco105I TACGTA 1 cut(s) 1198
Eco24I GRGCYC 1 cut(s) 505
Eco32I GATATC 1 cut(s) 1844
Eco47I GGWCC 4 cut(s) 1102, 1781, 1965, 2244
Eco53kI GAGCTC 1 cut(s) 503
Eco57I CTGAAG 5 cut(s) 527, 565, 1562, 1603, 1722
Eco72I CACGTG 1 cut(s) 2285
Eco81I CCTNAGG 1 cut(s) 1956
EcoICRI GAGCTC 1 cut(s) 503
EcoNI CCTNNNNNAGG 2 cut(s) 678, 2275
EcoRII CCWGG 8 cut(s) 124, 191, 412, 1233, 1508, 1560, 2158, 2327
EcoRV GATATC 1 cut(s) 1844
EcoT22I ATGCAT 4 cut(s) 111, 1245, 1527, 1945
EcoT38I GRGCYC 1 cut(s) 505
FalI AAGNNNNNCTT 4 cut(s) 549, 581, 1998, 2030
FaqI GGGAC 3 cut(s) 197, 395, 664
FauI CCCGC 1 cut(s) 1008
FauNDI CATATG 3 cut(s) 529, 1504, 2040
FbaI TGATCA 1 cut(s) 1164
Fnu4HI GCNGC 5 cut(s) 23, 368, 996, 1146, 2306
FriOI GRGCYC 1 cut(s) 505
Fsp4HI GCNGC 5 cut(s) 23, 368, 996, 1146, 2306
FspBI CTAG 7 cut(s) 678, 878, 1304, 1638, 1878, 2127, 2300
GlaI GCGC 2 cut(s) 144, 1760
GluI GCNGC 5 cut(s) 23, 368, 996, 1146, 2306
GsaI CCCAGC 1 cut(s) 1485
GsuI CTGGAG 4 cut(s) 302, 1531, 1945, 2350
HaeIII GGCC 5 cut(s) 129, 169, 446, 995, 1044
HapII CCGG 5 cut(s) 113, 131, 1460, 1646, 2353
HgaI GACGC 1 cut(s) 1872
HhaI GCGC 2 cut(s) 145, 1761
Hin1I GRCGYC 2 cut(s) 1883, 2164
Hin6I GCGC 2 cut(s) 143, 1759
HinP1I GCGC 2 cut(s) 143, 1759
HindIII AAGCTT 4 cut(s) 332, 509, 735, 1316
HinfI GANTC 7 cut(s) 215, 652, 698, 767, 839, 1404, 1932
HpaII CCGG 5 cut(s) 113, 131, 1460, 1646, 2353
HphI GGTGA 5 cut(s) 616, 699, 707, 812, 1283
Hpy166II GTNNAC 2 cut(s) 485, 1949
Hpy188III TCNNGA 8 cut(s) 281, 466, 678, 744, 898, 1784, 1839, 1924
Hpy8I GTNNAC 2 cut(s) 485, 1949
Hpy99I CGWCG 1 cut(s) 2025
HpyAV CCTTC 8 cut(s) 411, 684, 1147, 1331, 1627, 1642, 1746, 1810
HpyCH4III ACNGT 5 cut(s) 625, 1182, 1557, 1965, 2312
HpyCH4IV ACGT 8 cut(s) 186, 321, 481, 966, 1197, 2023, 2164, 2284
HpySE526I ACGT 8 cut(s) 186, 321, 481, 966, 1197, 2023, 2164, 2284
Hsp92I GRCGYC 2 cut(s) 1883, 2164
HspAI GCGC 2 cut(s) 143, 1759
Ksp22I TGATCA 1 cut(s) 1164
Kzo9I GATC 8 cut(s) 277, 360, 384, 532, 1164, 1597, 1690, 1867
LmnI GCTCC 3 cut(s) 500, 811, 1496
Lsp1109I GCAGC 3 cut(s) 9, 1132, 2317
LweI GCATC 6 cut(s) 118, 923, 1230, 1468, 1596, 1898
MaeI CTAG 7 cut(s) 678, 878, 1304, 1638, 1878, 2127, 2300
MaeII ACGT 8 cut(s) 186, 321, 481, 966, 1197, 2023, 2164, 2284
MalI GATC 8 cut(s) 279, 362, 386, 534, 1166, 1599, 1692, 1869
MbiI CCGCTC 1 cut(s) 1015
MboI GATC 8 cut(s) 277, 360, 384, 532, 1164, 1597, 1690, 1867
MfeI CAATTG 1 cut(s) 2067
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 3 cut(s) 505, 808, 2284
MlyI GAGTC 6 cut(s) 224, 646, 692, 776, 833, 1926
Mph1103I ATGCAT 4 cut(s) 111, 1245, 1527, 1945
MroXI GAANNNNTTC 2 cut(s) 893, 2181
MslI CAYNNNNRTG 1 cut(s) 2237
MspI CCGG 5 cut(s) 113, 131, 1460, 1646, 2353
MunI CAATTG 1 cut(s) 2067
Mva1269I GAATGC 4 cut(s) 55, 1761, 1864, 2079
MvaI CCWGG 8 cut(s) 126, 193, 414, 1235, 1510, 1562, 2160, 2329
NciI CCSGG 3 cut(s) 131, 1460, 1646
NdeI CATATG 3 cut(s) 529, 1504, 2040
NdeII GATC 8 cut(s) 277, 360, 384, 532, 1164, 1597, 1690, 1867
NheI GCTAGC 1 cut(s) 1303
NlaIV GGNNCC 3 cut(s) 123, 1103, 1559
NmuCI GTSAC 3 cut(s) 695, 1271, 2099
NsiI ATGCAT 4 cut(s) 111, 1245, 1527, 1945
NspI RCATGY 6 cut(s) 491, 761, 1943, 1947, 2147, 2236
NspV TTCGAA 1 cut(s) 2320
PaeI GCATGC 3 cut(s) 761, 1943, 2236
PciI ACATGT 1 cut(s) 487
PctI GAATGC 4 cut(s) 55, 1761, 1864, 2079
PdmI GAANNNNTTC 2 cut(s) 893, 2181
PfeI GAWTC 1 cut(s) 1404
PfoI TCCNGGA 3 cut(s) 1458, 2158, 2327
PkrI GCNGC 5 cut(s) 24, 369, 997, 1147, 2307
PleI GAGTC 6 cut(s) 223, 646, 692, 775, 833, 1926
PmaCI CACGTG 1 cut(s) 2285
PmlI CACGTG 1 cut(s) 2285
PpsI GAGTC 6 cut(s) 223, 646, 692, 775, 833, 1926
Ppu21I YACGTR 2 cut(s) 1198, 2285
PscI ACATGT 1 cut(s) 487
PshBI ATTAAT 1 cut(s) 930
Psp124BI GAGCTC 1 cut(s) 505
Psp6I CCWGG 8 cut(s) 124, 191, 412, 1233, 1508, 1560, 2158, 2327
PspCI CACGTG 1 cut(s) 2285
PspFI CCCAGC 1 cut(s) 1481
PspGI CCWGG 8 cut(s) 124, 191, 412, 1233, 1508, 1560, 2158, 2327
PspN4I GGNNCC 3 cut(s) 123, 1103, 1559
PspPI GGNCC 5 cut(s) 128, 1102, 1781, 1965, 2244
PstI CTGCAG 1 cut(s) 1150
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 8 cut(s) 247, 672, 799, 1114, 1774, 1805, 1948, 1962
RsaNI GTAC 8 cut(s) 246, 671, 798, 1113, 1773, 1804, 1947, 1961
RseI CAYNNNNRTG 1 cut(s) 2237
SacI GAGCTC 1 cut(s) 505
SatI GCNGC 5 cut(s) 23, 368, 996, 1146, 2306
Sau3AI GATC 8 cut(s) 277, 360, 384, 532, 1164, 1597, 1690, 1867
Sau96I GGNCC 5 cut(s) 128, 1102, 1781, 1965, 2244
SchI GAGTC 6 cut(s) 224, 646, 692, 776, 833, 1926
SduI GDGCHC 3 cut(s) 505, 808, 2284
SfaNI GCATC 6 cut(s) 118, 923, 1230, 1468, 1596, 1898
SfcI CTRYAG 1 cut(s) 1146
SfuI TTCGAA 1 cut(s) 2320
SinI GGWCC 4 cut(s) 1102, 1781, 1965, 2244
SmiMI CAYNNNNRTG 1 cut(s) 2237
SnaBI TACGTA 1 cut(s) 1198
SphI GCATGC 3 cut(s) 761, 1943, 2236
SsiI CCGC 7 cut(s) 368, 731, 761, 996, 1015, 1220, 1712
SspI AATATT 3 cut(s) 892, 1454, 1582
SspMI CTAG 7 cut(s) 678, 878, 1304, 1638, 1878, 2127, 2300
SstI GAGCTC 1 cut(s) 505
TaaI ACNGT 5 cut(s) 625, 1182, 1557, 1965, 2312
TaiI ACGT 8 cut(s) 189, 324, 484, 969, 1200, 2026, 2167, 2287
TaqI TCGA 4 cut(s) 301, 475, 1870, 2320
TaqII GACCGA 1 cut(s) 1824
TatI WGTACW 2 cut(s) 797, 1946
TauI GCSGC 2 cut(s) 370, 998
TfiI GAWTC 1 cut(s) 1404
TscAI CASTG 3 cut(s) 929, 954, 2317
TseFI GTSAC 3 cut(s) 695, 1271, 2099
TseI GCWGC 3 cut(s) 22, 1145, 2305
Tsp45I GTSAC 3 cut(s) 695, 1271, 2099
TspDTI ATGAA 6 cut(s) 62, 245, 1491, 2057, 2072, 2329
TspGWI ACGGA 3 cut(s) 191, 1094, 1590
TspRI CASTG 3 cut(s) 929, 954, 2317
VpaK11BI GGWCC 4 cut(s) 1102, 1781, 1965, 2244
VspI ATTAAT 1 cut(s) 930
XagI CCTNNNNNAGG 2 cut(s) 678, 2275
XapI RAATTY 4 cut(s) 792, 1259, 1705, 1919
XbaI TCTAGA 1 cut(s) 677
XceI RCATGY 6 cut(s) 491, 761, 1943, 1947, 2147, 2236
XcmI CCANNNNNNNNNTGG 1 cut(s) 1568
XmnI GAANNNNTTC 2 cut(s) 893, 2181
XspI CTAG 7 cut(s) 678, 878, 1304, 1638, 1878, 2127, 2300
ZraI GACGTC 1 cut(s) 2165
Zsp2I ATGCAT 4 cut(s) 111, 1245, 1527, 1945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.