Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0017591

Physical Location & Seq

Genomic Coordinates Forward (+)

1175688 .. 1176571

Gene Structure 884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022475

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCAACCTCGCAACAGTATCGTTATTCCTCTCCACTAACTGCATTACAGTTCTGTCACTCAGATAGTGATGACGACGATATTGATACGAGGGAAGGTGAGCAAGACAACAATTCTCCTTCCTTCGTAGGATCCGACATGGAGTACCGGTGTGAATCCGATACTGAATCGGAAAGTGCTGATTGTTCTGAAAGAAAATTCAAGTCTAGCAGTACCAAAGCAAACCAGAAGATGAAGTCTTCCGTGCGAGTGCGAGTGCGAGTATGGGAGGAGGAGGAGGAAATTACCCTTTTAAAAGGTTTAATTTCACATAAATCTGGAAATTTCAATATTGAAATCACCAAGTCACTCCCCAACAAGTCAAAAACGCAAATAAAGGATAAAGTCAGGCGATTGAAGGAGAAATGTCAAAAGTGGAAGGCCGGCAAATTTGCAAGTCCCCATGAGAAGAGGTTATACAACTTATCAAAGAAAATTTGGGAAGCTGATCTTAAGAGAGGTGAACAAGAGAAAAAATCGTTTAATGCTGATGCTGTTGGTGATGATAAATCGAAAACCACTAGTGATACAGAGGACATGGTGCATGTAAATGATGATGTTATTATCAAGGCGTTTGATGAATATTTATTGCGCCGGTCACTTAAGATTAATGAAGAAGAAGAACGCTTGGAATTGCTGAACAAGTGGAGGAAAGTCGCATATAATAAAGCTCGACATCAGTTGGCCATAGCCGAGTTTGCACTAGAGTTGCAACAATATAAACTCGATGGCTACAACAAATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

262

Amino Acids

30.34

Weight (kDa)

6.97

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	87 - 161	5.2e-11	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017591)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28081 FvH4_6g45821
prunus_persica	Prupe.4G287400_v2.0.a1
rosa_laevigata	RLG00000022475
rosa_multiflora	Rmu_sc0002893.1_g000015
rosa_roxburghii	Rroxscaffold_6G00388320
rosa_rugosa	Rorug03G0291400
rosa_samantha	Rh3AG334700 Rh3BG372400 Rh3CG368800 Rh3DG369700
rosa_wichuraiana	Rw3G029420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	126, 139
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	4 cut(s)	197, 322, 428, 474
AfaI	GTAC	2 cut(s)	146, 214
AflII	CTTAAG	2 cut(s)	491, 641
AgeI	ACCGGT	1 cut(s)	147
AgsI	TTSAA	4 cut(s)	202, 328, 335, 397
AhlI	ACTAGT	1 cut(s)	560
AluBI	AGCT	2 cut(s)	485, 710
AluI	AGCT	2 cut(s)	485, 710
AlwI	GGATC	2 cut(s)	126, 139
AoxI	GGCC	2 cut(s)	420, 723
ApoI	RAATTY	4 cut(s)	197, 322, 428, 474
AseI	ATTAAT	1 cut(s)	648
AsiGI	ACCGGT	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	633
AsuHPI	GGTGA	4 cut(s)	110, 331, 512, 551
BalI	TGGCCA	1 cut(s)	725
BamHI	GGATCC	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	440, 472
BbsI	GAAGAC	1 cut(s)	231
BccI	CCATC	1 cut(s)	761
BcgI	CGANNNNNNTGC	1 cut(s)	36
BcuI	ACTAGT	1 cut(s)	560
BfaI	CTAG	4 cut(s)	207, 561, 743, 784
BfrI	CTTAAG	2 cut(s)	491, 641
BmiI	GGNNCC	1 cut(s)	133
BmsI	GCATC	1 cut(s)	520
BpiI	GAAGAC	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	147
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bse118I	RCCGGY	3 cut(s)	147, 422, 633
BseMII	CTCAG	1 cut(s)	75
BseRI	GAGGAG	3 cut(s)	284, 287, 290
BshFI	GGCC	2 cut(s)	422, 725
BshTI	ACCGGT	1 cut(s)	147
BsiSI	CCGG	3 cut(s)	148, 423, 634
BslFI	GGGAC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	2 cut(s)	422, 725
Bsp143I	GATC	2 cut(s)	131, 487
BspANI	GGCC	2 cut(s)	422, 725
BspCNI	CTCAG	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	2 cut(s)	126, 139
BspTI	CTTAAG	2 cut(s)	491, 641
BsrFI	RCCGGY	3 cut(s)	147, 422, 633
BssAI	RCCGGY	3 cut(s)	147, 422, 633
BssMI	GATC	2 cut(s)	131, 487
Bst4CI	ACNGT	2 cut(s)	18, 51
Bst6I	CTCTTC	1 cut(s)	443
BstAFI	CTTAAG	2 cut(s)	491, 641
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	2 cut(s)	134, 490
BstMBI	GATC	2 cut(s)	131, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	737
BstNSI	RCATGY	1 cut(s)	587
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	422, 725
Cac8I	GCNNGC	1 cut(s)	424
CfoI	GCGC	1 cut(s)	633
Cfr10I	RCCGGY	3 cut(s)	147, 422, 633
Csp6I	GTAC	2 cut(s)	145, 213
CspAI	ACCGGT	1 cut(s)	147
CviAII	CATG	4 cut(s)	139, 443, 577, 584
CviJI	RGCY	6 cut(s)	422, 485, 710, 725, 731, 771
CviKI_1	RGCY	6 cut(s)	422, 485, 710, 725, 731, 771
CviQI	GTAC	2 cut(s)	145, 213
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	2 cut(s)	133, 489
DpnII	GATC	2 cut(s)	131, 487
DraI	TTTAAA	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	723
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
FaeI	CATG	4 cut(s)	142, 446, 580, 587
FalI	AAGNNNNNCTT	2 cut(s)	474, 506
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	4 cut(s)	138, 442, 576, 583
FspBI	CTAG	4 cut(s)	207, 561, 743, 784
GlaI	GCGC	1 cut(s)	632
HaeIII	GGCC	2 cut(s)	422, 725
HapII	CCGG	3 cut(s)	148, 423, 634
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	4 cut(s)	142, 446, 580, 587
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HinfI	GANTC	2 cut(s)	155, 167
HpaII	CCGG	3 cut(s)	148, 423, 634
HphI	GGTGA	4 cut(s)	110, 331, 512, 551
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	5 cut(s)	64, 136, 160, 172, 190
Hpy188III	TCNNGA	1 cut(s)	318
Hpy8I	GTNNAC	1 cut(s)	503
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	5 cut(s)	89, 129, 133, 391, 412
HpyCH4III	ACNGT	2 cut(s)	18, 51
HpyCH4V	TGCA	5 cut(s)	44, 434, 583, 740, 751
HpyF10VI	GCNNNNNNNGC	1 cut(s)	737
HpyF3I	CTNAG	1 cut(s)	61
Hsp92II	CATG	4 cut(s)	142, 446, 580, 587
HspAI	GCGC	1 cut(s)	631
KroI	GCCGGC	1 cut(s)	422
KroNI	GCCGGC	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	131, 487
LpnPI	CCDG	6 cut(s)	161, 239, 303, 373, 436, 647
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	4 cut(s)	207, 561, 743, 784
MaeIII	GTNAC	3 cut(s)	56, 345, 636
MalI	GATC	2 cut(s)	133, 489
MboI	GATC	2 cut(s)	131, 487
MboII	GAAGA	6 cut(s)	231, 241, 460, 665, 668, 671
MflI	RGATCY	1 cut(s)	131
MlsI	TGGCCA	1 cut(s)	725
MluCI	AATT	8 cut(s)	112, 197, 282, 303, 322, 428, 474, 671
MluNI	TGGCCA	1 cut(s)	725
MmeI	TCCRAC	1 cut(s)	159
Mox20I	TGGCCA	1 cut(s)	725
MroNI	GCCGGC	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	725
MseI	TTAA	6 cut(s)	293, 302, 492, 522, 642, 648
MslI	CAYNNNNRTG	1 cut(s)	588
Msp20I	TGGCCA	1 cut(s)	725
MspCI	CTTAAG	2 cut(s)	491, 641
MspI	CCGG	3 cut(s)	148, 423, 634
MwoI	GCNNNNNNNGC	1 cut(s)	737
NaeI	GCCGGC	1 cut(s)	424
NdeII	GATC	2 cut(s)	131, 487
NgoMIV	GCCGGC	1 cut(s)	422
NlaIII	CATG	4 cut(s)	142, 446, 580, 587
NlaIV	GGNNCC	1 cut(s)	133
NmeAIII	GCCGAG	1 cut(s)	757
NmuCI	GTSAC	3 cut(s)	56, 345, 636
NspI	RCATGY	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PdiI	GCCGGC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	155, 167
PinAI	ACCGGT	1 cut(s)	147
PshBI	ATTAAT	1 cut(s)	648
PspN4I	GGNNCC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	131
RsaI	GTAC	2 cut(s)	146, 214
RsaNI	GTAC	2 cut(s)	145, 213
RseI	CAYNNNNRTG	1 cut(s)	588
SaqAI	TTAA	6 cut(s)	293, 302, 492, 522, 642, 648
Sau3AI	GATC	2 cut(s)	131, 487
SetI	ASST	7 cut(s)	11, 100, 301, 455, 487, 502, 712
SfaNI	GCATC	1 cut(s)	520
SmiMI	CAYNNNNRTG	1 cut(s)	588
SmlI	CTYRAG	2 cut(s)	491, 641
SmoI	CTYRAG	2 cut(s)	491, 641
SpeI	ACTAGT	1 cut(s)	560
Sse9I	AATT	8 cut(s)	112, 197, 282, 303, 322, 428, 474, 671
SspI	AATATT	2 cut(s)	331, 623
SspMI	CTAG	4 cut(s)	207, 561, 743, 784
TaaI	ACNGT	2 cut(s)	18, 51
TaqI	TCGA	3 cut(s)	551, 712, 765
TasI	AATT	8 cut(s)	112, 197, 282, 303, 322, 428, 474, 671
TfiI	GAWTC	2 cut(s)	155, 167
Tru1I	TTAA	6 cut(s)	293, 302, 492, 522, 642, 648
Tru9I	TTAA	6 cut(s)	293, 302, 492, 522, 642, 648
TseFI	GTSAC	3 cut(s)	56, 345, 636
Tsp45I	GTSAC	3 cut(s)	56, 345, 636
TspDTI	ATGAA	3 cut(s)	248, 633, 666
TspGWI	ACGGA	1 cut(s)	232
Vha464I	CTTAAG	2 cut(s)	491, 641
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	4 cut(s)	197, 322, 428, 474
XceI	RCATGY	1 cut(s)	587
XspI	CTAG	4 cut(s)	207, 561, 743, 784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.