Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012571

Physical Location & Seq

Genomic Coordinates Reverse (-)

317326 .. 320913

Gene Structure 3588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00230.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGGGATCCTCATCCTCGCCGTCTTCCGCTATCTTCTACGATTTTCTCGACCGAATGCGAAACCCCGCTTCCCTCGATCTCGTCCGATCCATTAAGAGCTTCATTGTTTCGTTTTCGTTTTACCCTGCAAACCCTGAAAATGACGGCAAACGGGTTCAAGAATTCTTCGCCACAATGGAGGATTCAATTAGGGATCATCCCTTGTGGTCAGGTGCCACTGAGGACGAAGTGCAAAGTGCAATGGAGGGTTTGGAGAAGTATGTCATGACCAAATTGTTCTCCAGGACCTTTTCTTCTTGTCCGGAGGATGCCAAGACTGACCTTGAAGTCTCGCACAAAATACAATTGTTGCAGACTTTCCTGAAGCCCGAGCATCTGGATATTCCACCAGTTCTACGCAATGAAGCTTCATGGCTGCTTGCAGAAAAAGAGTTGCAGAAAATCAATGCTTTCAAAGCCCCCCGTGAGAAGCTTCTCTGTATCATGAATTGTTGCAAGGTCATTAACAATTTGTTGCTCAATGCATCAATGTCAGAAAAACATGTACTAGCCGGAGCTGATGACTTCCTTCCTGTCCTTATATACGTTATGATCAAGGCCAATCCTCCGCAATTACATTCCAACCTCAAGTTTATCCAGTTATATCGAAGGCAGGCAAAACTTGTGTCAGAAGCGGCCTATTACCTCACCAATCTTGTCTCAGCTAAAACATTTATTTCTGAGTTAAATGCAAAATCTCTTTCTATTGATGAAATTGAATTTGAAGAGAGTATGCAAGCAGCGAGACTGACCAATAAAGAGACAGAAAAGGAGGCCGCACCCAGTCTGGAAGAAATGACAACCTCCCAAGATCATGAAGATCCTGGCCCTTCATTGCGATACCATGATAAAGAAACAAGGGGTAGGTCAAACTACCCTTATATGGACAAAGAAGCTGGGGATTTGACAGTCGGAGATGTGGAGAGATTGCTGACTGTGTACAAGGAAGTTGTTACCAAGTATACTAGCTTGTGCACCGCTTTTAGGCAGCTTTCATTTTCTAGGATAGAAAACAATGTCACTAGTTTAGAAGACAGAAAGGTCTCATTCACAGAGTCTAAGGAATCAGGTTTGAATTCATCTCAAGGAGATGGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VPS9

Protein Analysis

381

Amino Acids

43.05

Weight (kDa)

5.15

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF5601	PF18151	30 - 94	6.4e-16	Domain of unknown function (DUF5601)
VPS9	PF02204	141 - 244	1.9e-32	Vacuolar sorting protein 9 (VPS9) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012571)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00230 FvH4_2g00230
malus_domestica	MD10G1001000.v1.1
prunus_persica	Prupe.8G002200_v2.0.a1 Prupe.8G002200_v2.0.a1 Prupe.8G002200_v2.0.a1 Prupe.8G002200_v2.0.a1
pyrus_communis	pycom05g00040 pycom10g00130
rosa_chinensis	RchiOBHm_Chr6g0249521
rosa_laevigata	RLG00000015573
rosa_roxburghii	Rroxscaffold_7G00217600
rosa_rugosa	Rorug05G0493100 Rorug05G0493200.1
rosa_samantha	Rh6AG002900 Rh6BG007200 Rh6CG001900 Rh6DG001900
rosa_wichuraiana	Rw6G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	329, 1082
AccB1I	GGYRCC	1 cut(s)	215
AccI	GTMKAC	1 cut(s)	1004
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	6 cut(s)	30, 69, 611, 677, 819, 1020
AclWI	GGATC	5 cut(s)	3, 16, 84, 204, 857
AcsI	RAATTY	3 cut(s)	164, 761, 1117
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	549, 983
AfiI	CCNNNNNNNGG	2 cut(s)	925, 1026
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	7 cut(s)	161, 189, 329, 457, 761, 767, 1117
AhlI	ACTAGT	1 cut(s)	1064
AjnI	CCWGG	2 cut(s)	284, 865
AluBI	AGCT	8 cut(s)	102, 410, 475, 560, 707, 938, 1011, 1033
AluI	AGCT	8 cut(s)	102, 410, 475, 560, 707, 938, 1011, 1033
Alw21I	GWGCWC	1 cut(s)	1019
Alw26I	GTCTC	5 cut(s)	337, 706, 781, 797, 1090
Alw44I	GTGCAC	1 cut(s)	1015
AlwI	GGATC	5 cut(s)	3, 16, 84, 204, 857
Ama87I	CYCGRG	1 cut(s)	371
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	4 cut(s)	600, 678, 816, 868
ApaLI	GTGCAC	1 cut(s)	1015
ApeKI	GCWGC	3 cut(s)	418, 782, 1030
ApoI	RAATTY	3 cut(s)	164, 761, 1117
ArsI	GACNNNNNNTTYG	2 cut(s)	653, 685
AspS9I	GGNCC	2 cut(s)	288, 869
AsuHPI	GGTGA	1 cut(s)	682
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	1019
BamHI	GGATCC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	18, 1080
Bbv12I	GWGCWC	1 cut(s)	1019
BbvI	GCAGC	3 cut(s)	405, 794, 1042
BccI	CCATC	1 cut(s)	1127
BceAI	ACGGC	2 cut(s)	7, 163
BciT130I	CCWGG	2 cut(s)	286, 867
BclI	TGATCA	1 cut(s)	594
BcoDI	GTCTC	5 cut(s)	337, 706, 781, 797, 1090
BcuI	ACTAGT	1 cut(s)	1064
BfaI	CTAG	4 cut(s)	551, 1008, 1044, 1065
BisI	GCNGC	5 cut(s)	419, 678, 783, 819, 1031
BlsI	GCNGC	5 cut(s)	420, 679, 784, 820, 1032
Bme1390I	CCNGG	2 cut(s)	286, 867
Bme18I	GGWCC	1 cut(s)	288
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	288, 869
BmiI	GGNNCC	2 cut(s)	10, 217
BmrFI	CCNGG	2 cut(s)	286, 867
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	3 cut(s)	301, 385, 536
BmuI	ACTGGG	1 cut(s)	819
BpiI	GAAGAC	2 cut(s)	18, 1080
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	268
BpuEI	CTTGAG	2 cut(s)	614, 1110
BsaBI	GATNNNNATC	1 cut(s)	13
BsaI	GGTCTC	1 cut(s)	1090
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	2 cut(s)	925, 1026
Bse1I	ACTGG	3 cut(s)	392, 640, 825
Bse3DI	GCAATG	3 cut(s)	249, 409, 875
Bse8I	GATNNNNATC	1 cut(s)	13
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	286, 867
BseGI	GGATG	3 cut(s)	14, 199, 316
BseJI	GATNNNNATC	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	925, 1026
BseMI	GCAATG	3 cut(s)	249, 409, 875
BseMII	CTCAG	3 cut(s)	213, 714, 717
BseNI	ACTGG	3 cut(s)	392, 640, 825
BseSI	GKGCMC	1 cut(s)	1019
BseXI	GCAGC	3 cut(s)	405, 794, 1042
BseYI	CCCAGC	1 cut(s)	938
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	4 cut(s)	602, 680, 818, 870
BshNI	GGYRCC	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	1019
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	305, 555
BslI	CCNNNNNNNGG	2 cut(s)	925, 1026
BsmAI	GTCTC	5 cut(s)	337, 706, 781, 797, 1090
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	4 cut(s)	602, 680, 818, 870
Bso31I	GGTCTC	1 cut(s)	1090
BsoBI	CYCGRG	1 cut(s)	371
Bsp1286I	GDGCHC	1 cut(s)	1019
Bsp13I	TCCGGA	1 cut(s)	304
Bsp1407I	TGTACA	1 cut(s)	981
Bsp143I	GATC	7 cut(s)	8, 79, 89, 196, 594, 853, 862
BspACI	CCGC	6 cut(s)	30, 69, 611, 677, 819, 1020
BspANI	GGCC	4 cut(s)	602, 680, 818, 870
BspCNI	CTCAG	3 cut(s)	214, 715, 716
BspEI	TCCGGA	1 cut(s)	304
BspHI	TCATGA	3 cut(s)	267, 486, 856
BspLI	GGNNCC	2 cut(s)	10, 217
BspPI	GGATC	5 cut(s)	3, 16, 84, 204, 857
BspT107I	GGYRCC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	1090
BsrDI	GCAATG	3 cut(s)	249, 409, 875
BsrGI	TGTACA	1 cut(s)	981
BsrI	ACTGG	3 cut(s)	392, 640, 825
BssMI	GATC	7 cut(s)	8, 79, 89, 196, 594, 853, 862
BssNAI	GTATAC	1 cut(s)	1005
Bst1107I	GTATAC	1 cut(s)	1005
Bst2UI	CCWGG	2 cut(s)	286, 867
Bst4CI	ACNGT	2 cut(s)	952, 979
Bst6I	CTCTTC	1 cut(s)	762
BstAUI	TGTACA	1 cut(s)	981
BstC8I	GCNNGC	3 cut(s)	423, 657, 780
BstDEI	CTNAG	4 cut(s)	222, 703, 723, 1101
BstF5I	GGATG	3 cut(s)	14, 199, 316
BstKTI	GATC	7 cut(s)	11, 82, 92, 199, 597, 856, 865
BstMAI	GTCTC	5 cut(s)	337, 706, 781, 797, 1090
BstMBI	GATC	7 cut(s)	8, 79, 89, 196, 594, 853, 862
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	2 cut(s)	286, 867
BstNSI	RCATGY	1 cut(s)	548
BstSCI	CCNGG	2 cut(s)	284, 865
BstSLI	GKGCMC	1 cut(s)	1019
BstV1I	GCAGC	3 cut(s)	405, 794, 1042
BstV2I	GAAGAC	2 cut(s)	18, 1080
BstX2I	RGATCY	2 cut(s)	8, 862
BstYI	RGATCY	2 cut(s)	8, 862
BstZ17I	GTATAC	1 cut(s)	1005
BsuRI	GGCC	4 cut(s)	602, 680, 818, 870
BtsCI	GGATG	3 cut(s)	14, 199, 316
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	3 cut(s)	423, 657, 780
CciI	TCATGA	3 cut(s)	267, 486, 856
Cfr13I	GGNCC	2 cut(s)	288, 869
Csp6I	GTAC	2 cut(s)	548, 982
CviAII	CATG	6 cut(s)	268, 414, 487, 545, 857, 887
CviQI	GTAC	2 cut(s)	548, 982
DdeI	CTNAG	4 cut(s)	222, 703, 723, 1101
DpnI	GATC	7 cut(s)	10, 81, 91, 198, 596, 855, 864
DpnII	GATC	7 cut(s)	8, 79, 89, 196, 594, 853, 862
DrdI	GACNNNNNNGTC	2 cut(s)	329, 1082
DseDI	GACNNNNNNGTC	2 cut(s)	329, 1082
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
Eco31I	GGTCTC	1 cut(s)	1090
Eco47I	GGWCC	1 cut(s)	288
Eco57I	CTGAAG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	288
EcoRI	GAATTC	2 cut(s)	164, 1117
EcoRII	CCWGG	2 cut(s)	284, 865
EcoT22I	ATGCAT	1 cut(s)	529
FaeI	CATG	6 cut(s)	271, 417, 490, 548, 860, 890
FatI	CATG	6 cut(s)	267, 413, 486, 544, 856, 886
FauI	CCCGC	1 cut(s)	76
FbaI	TGATCA	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	1004
Fnu4HI	GCNGC	5 cut(s)	419, 678, 783, 819, 1031
FokI	GGATG	2 cut(s)	186, 323
Fsp4HI	GCNGC	5 cut(s)	419, 678, 783, 819, 1031
FspBI	CTAG	4 cut(s)	551, 1008, 1044, 1065
GluI	GCNGC	5 cut(s)	419, 678, 783, 819, 1031
GsaI	CCCAGC	1 cut(s)	942
GsuI	CTGGAG	1 cut(s)	268
HaeIII	GGCC	4 cut(s)	602, 680, 818, 870
HapII	CCGG	2 cut(s)	305, 555
Hin1II	CATG	6 cut(s)	271, 417, 490, 548, 860, 890
HindIII	AAGCTT	2 cut(s)	408, 473
HinfI	GANTC	3 cut(s)	185, 1097, 1106
HpaII	CCGG	2 cut(s)	305, 555
HphI	GGTGA	1 cut(s)	682
Hpy166II	GTNNAC	3 cut(s)	982, 1005, 1017
Hpy188I	TCNGA	5 cut(s)	89, 538, 673, 724, 956
Hpy188III	TCNNGA	9 cut(s)	50, 161, 268, 305, 364, 380, 487, 830, 857
Hpy8I	GTNNAC	3 cut(s)	982, 1005, 1017
HpyAV	CCTTC	3 cut(s)	581, 645, 882
HpyCH4III	ACNGT	2 cut(s)	952, 979
HpyCH4IV	ACGT	1 cut(s)	588
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	4 cut(s)	222, 703, 723, 1101
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	6 cut(s)	271, 417, 490, 548, 860, 890
Kpn2I	TCCGGA	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	7 cut(s)	8, 79, 89, 196, 594, 853, 862
LmnI	GCTCC	1 cut(s)	557
Lsp1109I	GCAGC	3 cut(s)	405, 794, 1042
LweI	GCATC	3 cut(s)	301, 385, 536
MaeI	CTAG	4 cut(s)	551, 1008, 1044, 1065
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	994, 1060
MalI	GATC	7 cut(s)	10, 81, 91, 198, 596, 855, 864
MboI	GATC	7 cut(s)	8, 79, 89, 196, 594, 853, 862
MboII	GAAGA	8 cut(s)	18, 28, 160, 288, 779, 845, 872, 1085
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	2 cut(s)	8, 862
MhlI	GDGCHC	1 cut(s)	1019
MlyI	GAGTC	1 cut(s)	1106
MmeI	TCCRAC	2 cut(s)	648, 934
Mph1103I	ATGCAT	1 cut(s)	529
MroI	TCCGGA	1 cut(s)	304
MseI	TTAA	3 cut(s)	96, 507, 728
MspI	CCGG	2 cut(s)	305, 555
MspR9I	CCNGG	2 cut(s)	286, 867
MunI	CAATTG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	63
MvaI	CCWGG	2 cut(s)	286, 867
MwoI	GCNNNNNNNGC	1 cut(s)	458
NdeII	GATC	7 cut(s)	8, 79, 89, 196, 594, 853, 862
NlaIII	CATG	6 cut(s)	271, 417, 490, 548, 860, 890
NlaIV	GGNNCC	2 cut(s)	10, 217
NmuCI	GTSAC	1 cut(s)	1060
NsiI	ATGCAT	1 cut(s)	529
NspI	RCATGY	1 cut(s)	548
PagI	TCATGA	3 cut(s)	267, 486, 856
PciI	ACATGT	1 cut(s)	544
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	185, 1106
PfoI	TCCNGGA	1 cut(s)	284
PkrI	GCNGC	5 cut(s)	420, 679, 784, 820, 1032
PleI	GAGTC	1 cut(s)	1105
PpsI	GAGTC	1 cut(s)	1105
PpuMI	RGGWCCY	1 cut(s)	288
PscI	ACATGT	1 cut(s)	544
Psp5II	RGGWCCY	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	284, 865
PspFI	CCCAGC	1 cut(s)	938
PspGI	CCWGG	2 cut(s)	284, 865
PspN4I	GGNNCC	2 cut(s)	10, 217
PspPI	GGNCC	2 cut(s)	288, 869
PspPPI	RGGWCCY	1 cut(s)	288
PsuI	RGATCY	2 cut(s)	8, 862
RsaI	GTAC	2 cut(s)	549, 983
RsaNI	GTAC	2 cut(s)	548, 982
SaqAI	TTAA	3 cut(s)	96, 507, 728
SatI	GCNGC	5 cut(s)	419, 678, 783, 819, 1031
Sau3AI	GATC	7 cut(s)	8, 79, 89, 196, 594, 853, 862
Sau96I	GGNCC	2 cut(s)	288, 869
SchI	GAGTC	1 cut(s)	1106
ScrFI	CCNGG	2 cut(s)	286, 867
SduI	GDGCHC	1 cut(s)	1019
SfaNI	GCATC	3 cut(s)	301, 385, 536
SinI	GGWCC	1 cut(s)	288
SmlI	CTYRAG	2 cut(s)	629, 1125
SmoI	CTYRAG	2 cut(s)	629, 1125
SpeI	ACTAGT	1 cut(s)	1064
SsiI	CCGC	6 cut(s)	30, 69, 611, 677, 819, 1020
SspMI	CTAG	4 cut(s)	551, 1008, 1044, 1065
StyD4I	CCNGG	2 cut(s)	284, 865
TaaI	ACNGT	2 cut(s)	952, 979
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	3 cut(s)	51, 78, 649
TaqII	GACCGA	1 cut(s)	69
TatI	WGTACW	2 cut(s)	547, 981
TauI	GCSGC	2 cut(s)	680, 821
TfiI	GAWTC	2 cut(s)	185, 1106
Tru1I	TTAA	3 cut(s)	96, 507, 728
Tru9I	TTAA	3 cut(s)	96, 507, 728
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	1060
TseI	GCWGC	3 cut(s)	418, 782, 1030
Tsp45I	GTSAC	1 cut(s)	1060
TspDTI	ATGAA	9 cut(s)	94, 402, 420, 503, 768, 864, 873, 1026, 1110
TspRI	CASTG	1 cut(s)	226
VneI	GTGCAC	1 cut(s)	1015
VpaK11BI	GGWCC	1 cut(s)	288
XapI	RAATTY	3 cut(s)	164, 761, 1117
XceI	RCATGY	1 cut(s)	548
XmiI	GTMKAC	1 cut(s)	1004
XspI	CTAG	4 cut(s)	551, 1008, 1044, 1065
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.