Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012571

Physical Location & Seq

Genomic Coordinates Reverse (-)

176339 .. 180653

Gene Structure 4315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G002200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAGGGATCTTCATCCTCTTCGGCTATCTTCTATGATTTTCTCGATCGAATGCGAAACCCTGCTTCCCTCGATCTCGTCCGATCCATCAAAAGCTTTATTGTCTCATTTTCGTTTTACGCGGCCAACCCTGAAAATGACGGCAAAAAGGTTCAAGATTTCTACACAACAATGGAAGATGCTATTAGGGATCATCCATTGTGGGCAGGTGCCACTGATCAGGAGGTTGATTGTGCAATGGAGGGTTTGGAGAAATATGTCATGACAAAATTGTTCTCCCGGACCTTTTCTTCTACTCCCGAGGATGTAAAGATTGACCTTGAAACCTCGCAGAAAATACACTTGTTGCAGACCTTCTTGAAGCCTGAGCATTTGGATATTCCAGCAGTTCTACGCAATGAAGCTTCATGGCTGCTTGCAGAAAAAGAATTGCAGAAAATTAATGCTTTCAAAGCCCCTCGTGAGAAGCTTCTGTGTGTTATGAATTGTTGCAAGGTCATCAACAATTTATTGTTGAATGCATCAATGTCAGAAAATCATGTACTGGCAGGAGCTGATGACTTTCTTCCTGTCCTTATATATGTTATGATCAAGGCCAATCCTCCACAGTTGCATTCCAACCTCAAATTCATTCAGTTATATCGAAGGCAGACAAAACTTGTGTCTGAAGCAGCCTATTACCTCACCAATCTTGTCTCAGCCAAAACATTTATTTTTGAGTTAAATGCTAAATCTCTTTCTATCGATGAAATCGAATTTGAAGAGAGCATGCAAGCAGCAAGAATGACCAATAAAGAGACAGAAAAGGAAGCCACGCCCACTTTGGAAGAAAGGACAACCTCGCAAGGCCAGACCGATCCTGGCCCTTCAGCAAGATCACATGATAAAGAAACAAGTGGTGCGTCAAATTACCCTTATATGGACAAAGAAGCTGGGGATTTGACAATTGGAGATGTGGAGAGGCTGCTGAGTGTGTACAAACAAGTTGTTACCAAGTATACTGGTCTTTGCACAGCCGTTAAACACCTTTCTCTTTCTAGGACAGAACCCCATGTCACTAATTTAGAAGCTAGAAATGTTTTCTTAAGACAGCCCGAGAAAACAGGTAAGAATTCTGATCAAAGAGTAGGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VPS9

Protein Analysis

379

Amino Acids

42.67

Weight (kDa)

5.62

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012571)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00230 FvH4_2g00230
malus_domestica	MD10G1001000.v1.1
prunus_persica	Prupe.8G002200_v2.0.a1 Prupe.8G002200_v2.0.a1 Prupe.8G002200_v2.0.a1 Prupe.8G002200_v2.0.a1
pyrus_communis	pycom05g00040 pycom10g00130
rosa_chinensis	RchiOBHm_Chr6g0249521
rosa_laevigata	RLG00000015573
rosa_roxburghii	Rroxscaffold_7G00217600
rosa_rugosa	Rorug05G0493100 Rorug05G0493200.1
rosa_samantha	Rh6AG002900 Rh6BG007200 Rh6CG001900 Rh6DG001900
rosa_wichuraiana	Rw6G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	998
AccII	CGCG	1 cut(s)	122
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	4 cut(s)	16, 78, 198, 851
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	3 cut(s)	626, 755, 1111
AcuI	CTGAAG	2 cut(s)	687, 852
AfaI	GTAC	2 cut(s)	543, 977
AfiI	CCNNNNNNNGG	1 cut(s)	919
AflII	CTTAAG	1 cut(s)	1084
AgsI	TTSAA	6 cut(s)	155, 323, 361, 451, 517, 761
AjnI	CCWGG	1 cut(s)	859
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AluBI	AGCT	6 cut(s)	96, 404, 469, 554, 932, 1070
AluI	AGCT	6 cut(s)	96, 404, 469, 554, 932, 1070
Alw26I	GTCTC	3 cut(s)	109, 700, 791
AlwI	GGATC	4 cut(s)	16, 78, 198, 851
AlwNI	CAGNNNCTG	1 cut(s)	554
Ama87I	CYCGRG	2 cut(s)	299, 1094
AoxI	GGCC	4 cut(s)	123, 594, 847, 862
ApeKI	GCWGC	4 cut(s)	412, 671, 776, 964
ApoI	RAATTY	3 cut(s)	626, 755, 1111
ArsI	GACNNNNNNTTYG	2 cut(s)	647, 679
AseI	ATTAAT	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	282, 863
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	676
AvaI	CYCGRG	2 cut(s)	299, 1094
AvaII	GGWCC	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	209
BauI	CACGAG	1 cut(s)	459
BbvI	GCAGC	4 cut(s)	399, 683, 788, 951
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	2 cut(s)	157, 1001
BciT130I	CCWGG	1 cut(s)	861
BclI	TGATCA	3 cut(s)	217, 588, 1117
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	3 cut(s)	109, 700, 791
BfaI	CTAG	2 cut(s)	1038, 1071
BfrI	CTTAAG	1 cut(s)	1084
BfuAI	ACCTGC	1 cut(s)	197
BisI	GCNGC	5 cut(s)	123, 413, 672, 777, 965
BlsI	GCNGC	5 cut(s)	124, 414, 673, 778, 966
Bme1390I	CCNGG	2 cut(s)	280, 861
Bme18I	GGWCC	1 cut(s)	282
BmeT110I	CYCGRG	2 cut(s)	299, 1094
BmgT120I	GGNCC	2 cut(s)	282, 863
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	280, 861
BmsI	GCATC	2 cut(s)	169, 530
Bpu10I	CCTNAGC	1 cut(s)	366
BpuMI	CCSGG	1 cut(s)	280
Bsa29I	ATCGAT	1 cut(s)	744
BsaBI	GATNNNNATC	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	919
Bse1I	ACTGG	2 cut(s)	549, 1006
Bse3DI	GCAATG	2 cut(s)	243, 403
Bse8I	GATNNNNATC	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	861
BseCI	ATCGAT	1 cut(s)	744
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	3 cut(s)	14, 193, 310
BseJI	GATNNNNATC	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	919
BseMI	GCAATG	2 cut(s)	243, 403
BseMII	CTCAG	3 cut(s)	357, 711, 959
BseNI	ACTGG	2 cut(s)	549, 1006
BseXI	GCAGC	4 cut(s)	399, 683, 788, 951
BseYI	CCCAGC	1 cut(s)	932
Bsh1236I	CGCG	1 cut(s)	122
Bsh1285I	CGRYCG	1 cut(s)	49
BshFI	GGCC	4 cut(s)	125, 596, 849, 864
BshNI	GGYRCC	1 cut(s)	209
BshVI	ATCGAT	1 cut(s)	744
BsiEI	CGRYCG	1 cut(s)	49
BsiHKCI	CYCGRG	2 cut(s)	299, 1094
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	919
BsmAI	GTCTC	3 cut(s)	109, 700, 791
BsmI	GAATGC	3 cut(s)	57, 523, 613
BsnI	GGCC	4 cut(s)	125, 596, 849, 864
BsoBI	CYCGRG	2 cut(s)	299, 1094
Bsp1407I	TGTACA	1 cut(s)	975
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	4 cut(s)	125, 596, 849, 864
BspCNI	CTCAG	3 cut(s)	358, 710, 960
BspDI	ATCGAT	1 cut(s)	744
BspFNI	CGCG	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	197
BspPI	GGATC	4 cut(s)	16, 78, 198, 851
BspT107I	GGYRCC	1 cut(s)	209
BspTI	CTTAAG	1 cut(s)	1084
BsrDI	GCAATG	2 cut(s)	243, 403
BsrGI	TGTACA	1 cut(s)	975
BsrI	ACTGG	2 cut(s)	549, 1006
BssECI	CCNNGG	1 cut(s)	300
BssNAI	GTATAC	1 cut(s)	999
BssSI	CACGAG	1 cut(s)	459
Bst1107I	GTATAC	1 cut(s)	999
Bst2BI	CACGAG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	861
Bst4CI	ACNGT	1 cut(s)	609
Bst6I	CTCTTC	2 cut(s)	25, 756
BstAFI	CTTAAG	1 cut(s)	1084
BstAUI	TGTACA	1 cut(s)	975
BstC8I	GCNNGC	3 cut(s)	417, 770, 774
BstDEI	CTNAG	3 cut(s)	366, 697, 968
BstF5I	GGATG	3 cut(s)	14, 193, 310
BstFNI	CGCG	1 cut(s)	122
BstMAI	GTCTC	3 cut(s)	109, 700, 791
BstMCI	CGRYCG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	861
BstNSI	RCATGY	1 cut(s)	772
BstSCI	CCNGG	2 cut(s)	278, 859
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	4 cut(s)	399, 683, 788, 951
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BstZ17I	GTATAC	1 cut(s)	999
Bsu15I	ATCGAT	1 cut(s)	744
BsuRI	GGCC	4 cut(s)	125, 596, 849, 864
BsuTUI	ATCGAT	1 cut(s)	744
BtsCI	GGATG	3 cut(s)	14, 193, 310
BtsIMutI	CAGTG	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	197
Cac8I	GCNNGC	3 cut(s)	417, 770, 774
CaiI	CAGNNNCTG	1 cut(s)	554
CciI	TCATGA	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	282, 863
ClaI	ATCGAT	1 cut(s)	744
CseI	GACGC	1 cut(s)	891
Csp6I	GTAC	2 cut(s)	542, 976
CviAII	CATG	6 cut(s)	262, 408, 539, 769, 881, 1052
CviQI	GTAC	2 cut(s)	542, 976
DdeI	CTNAG	3 cut(s)	366, 697, 968
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	2 cut(s)	25, 756
EarI	CTCTTC	2 cut(s)	25, 756
Eco47I	GGWCC	1 cut(s)	282
Eco57I	CTGAAG	2 cut(s)	687, 852
Eco88I	CYCGRG	2 cut(s)	299, 1094
EcoRI	GAATTC	1 cut(s)	1111
EcoRII	CCWGG	1 cut(s)	859
EcoT22I	ATGCAT	1 cut(s)	523
FaeI	CATG	6 cut(s)	265, 411, 542, 772, 884, 1055
FatI	CATG	6 cut(s)	261, 407, 538, 768, 880, 1051
FbaI	TGATCA	3 cut(s)	217, 588, 1117
FblI	GTMKAC	1 cut(s)	998
Fnu4HI	GCNGC	5 cut(s)	123, 413, 672, 777, 965
FokI	GGATG	2 cut(s)	180, 317
Fsp4HI	GCNGC	5 cut(s)	123, 413, 672, 777, 965
FspBI	CTAG	2 cut(s)	1038, 1071
GluI	GCNGC	5 cut(s)	123, 413, 672, 777, 965
GsaI	CCCAGC	1 cut(s)	936
HaeIII	GGCC	4 cut(s)	125, 596, 849, 864
HapII	CCGG	1 cut(s)	280
HgaI	GACGC	1 cut(s)	891
Hin1II	CATG	6 cut(s)	265, 411, 542, 772, 884, 1055
HindIII	AAGCTT	3 cut(s)	94, 402, 467
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	1 cut(s)	676
Hpy166II	GTNNAC	2 cut(s)	976, 999
Hpy188I	TCNGA	4 cut(s)	83, 532, 667, 1117
Hpy188III	TCNNGA	7 cut(s)	44, 155, 221, 262, 299, 358, 461
Hpy8I	GTNNAC	2 cut(s)	976, 999
HpyAV	CCTTC	3 cut(s)	364, 639, 876
HpyCH4III	ACNGT	1 cut(s)	609
HpyCH4V	TGCA	9 cut(s)	236, 349, 419, 433, 492, 521, 613, 772, 1011
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	3 cut(s)	366, 697, 968
Hsp92II	CATG	6 cut(s)	265, 411, 542, 772, 884, 1055
Ksp22I	TGATCA	3 cut(s)	217, 588, 1117
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	4 cut(s)	399, 683, 788, 951
LweI	GCATC	2 cut(s)	169, 530
MaeI	CTAG	2 cut(s)	1038, 1071
MaeIII	GTNAC	2 cut(s)	988, 1054
MboII	GAAGA	8 cut(s)	3, 12, 22, 188, 282, 557, 773, 839
MfeI	CAATTG	1 cut(s)	945
MflI	RGATCY	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	642
Mph1103I	ATGCAT	1 cut(s)	523
MseI	TTAA	4 cut(s)	441, 722, 1020, 1085
MslI	CAYNNNNRTG	1 cut(s)	170
MspCI	CTTAAG	1 cut(s)	1084
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	2 cut(s)	280, 861
MunI	CAATTG	1 cut(s)	945
Mva1269I	GAATGC	3 cut(s)	57, 523, 613
MvaI	CCWGG	1 cut(s)	861
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	452
NciI	CCSGG	1 cut(s)	280
NlaIII	CATG	6 cut(s)	265, 411, 542, 772, 884, 1055
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	1054
NsiI	ATGCAT	1 cut(s)	523
NspI	RCATGY	1 cut(s)	772
PaeI	GCATGC	1 cut(s)	772
PagI	TCATGA	1 cut(s)	261
PaqCI	CACCTGC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	750
PctI	GAATGC	3 cut(s)	57, 523, 613
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	5 cut(s)	124, 414, 673, 778, 966
Ple19I	CGATCG	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	859
PspFI	CCCAGC	1 cut(s)	932
PspGI	CCWGG	1 cut(s)	859
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	282, 863
PstNI	CAGNNNCTG	1 cut(s)	554
PsuI	RGATCY	1 cut(s)	8
PvuI	CGATCG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	543, 977
RsaNI	GTAC	2 cut(s)	542, 976
RseI	CAYNNNNRTG	1 cut(s)	170
SaqAI	TTAA	4 cut(s)	441, 722, 1020, 1085
SatI	GCNGC	5 cut(s)	123, 413, 672, 777, 965
Sau96I	GGNCC	2 cut(s)	282, 863
ScrFI	CCNGG	2 cut(s)	280, 861
SfaNI	GCATC	2 cut(s)	169, 530
SinI	GGWCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	1084
SmoI	CTYRAG	1 cut(s)	1084
SphI	GCATGC	1 cut(s)	772
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	2 cut(s)	1038, 1071
StyD4I	CCNGG	2 cut(s)	278, 859
TaaI	ACNGT	1 cut(s)	609
TaqI	TCGA	6 cut(s)	45, 49, 72, 643, 744, 753
TaqII	GACCGA	1 cut(s)	869
TatI	WGTACW	2 cut(s)	541, 975
TauI	GCSGC	1 cut(s)	125
Tru1I	TTAA	4 cut(s)	441, 722, 1020, 1085
Tru9I	TTAA	4 cut(s)	441, 722, 1020, 1085
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	1054
TseI	GCWGC	4 cut(s)	412, 671, 776, 964
Tsp45I	GTSAC	1 cut(s)	1054
TspDTI	ATGAA	5 cut(s)	396, 414, 497, 619, 762
TspRI	CASTG	1 cut(s)	220
Vha464I	CTTAAG	1 cut(s)	1084
VpaK11BI	GGWCC	1 cut(s)	282
VspI	ATTAAT	1 cut(s)	441
XapI	RAATTY	3 cut(s)	626, 755, 1111
XceI	RCATGY	1 cut(s)	772
XcmI	CCANNNNNNNNNTGG	2 cut(s)	820, 857
XmiI	GTMKAC	1 cut(s)	998
XspI	CTAG	2 cut(s)	1038, 1071
Zsp2I	ATGCAT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.