Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006384

Physical Location & Seq

Genomic Coordinates Forward (+)

2416663 .. 2421022

Gene Structure 4360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03100.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGAGGCATTTTGCCTTGATGCTTCCAATTGATTACTTGTTGGCAGGCATTAAAGTGGGTGATGAACTTCTCATTGATGGTGGAATGGCCCGCTTTAAAGTCATTGAAAGGATTGGAAGTGATCTACGTTGCCAATGCATAGACTCCGGTTTGTTCTTGCCTTGTGCAAAGTTCAGCTTTTGGAGAGATGGGAAACTTGTGGAGAGGAACCAAGAGCTCCCTACTCTGTCAACAAAGGATTGGTCTGACATCGAATTTGGAATTTCTGAAGGTGTTGATTTTATCGCCATGTCCTTTGTAAATGATGCTGAATCTGTCAGGCATTTGAAAGATTACCTCACTATCAAATCACTCAAATCTATTAGAGTTTTGGCAAAGATTGAGAGCTTGGAAGCCCTTCAGAAGCTGGAAGAAATCATCGAAGCTTCTGATGGAGTCATGATTGCCCGGGTTGATCTTGGAGTTGAAATTCCACTTGAACAGATTCCAACTGTCCAAGAGGAAATAACTCAAATGTGTAGGCAGCTAAACAAGCCAGTAATTGTAGCTTCTCAACTACTTGAATCCATGACTGAATACCCAACCCCAACACGTGCTGAGGTTGCAGATGTCTCTGAAGCTGTTCGACAGTATGCAGATGCCTTGATGCTAGCTGGGGAATCAGCCATTGGATTATTTGGGCAGAAGGCTCTTTCTGTCCTTCAAATGACCAGCAGTAGAATGGAGACATGGAGTCGTGTTGAAAACCGCCAAGATCTTCTGCAGCTACGGCAACTAGGAGTCTCGTTGCCTGATCGCATTGCTGAGCAGATTTGCAATTCTGCTGTCGGAATGGCTAACAATCTTGCTGTGGATGCAATTTTTGTATACACCAAGCACGGACACATGGCATCACTCTTGTCACGCAACAGACCAAACCCTCCCATATTTGCTTTCACAAATGATGAGAGTACCAAAATGGCTCTGAATTTGCAGTGGGGAGTTACTCCACTTCTTGTTCATCTATCAGATGACATGGAGTCTAACATCTCAAGCACAATCAATCTCATAAAATCAAAGGGTTTGGTGAAAGATGGAGACACAGTTTTGGTGGTCTCAGATGTCACACCAACTCGCTCTACCCCAATGGCAGTCCAATCAATCCAGGTACCAGAAATCGCAAAGACCAGTCCTAACTTGTTTACAGATGGTCATCCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

401

Amino Acids

44.25

Weight (kDa)

4.99

Isoelectric Point (pI)

38.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK	PF00224	95 - 423	2.2e-82	Pyruvate kinase, barrel domain
PK_C	PF02887	462 - 562	1.2e-23	Pyruvate kinase, alpha/beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006384)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g03100 FvH4_2g03100 FvH4_2g03100 FvH4_2g03100
malus_domestica	MD00G1031300.v1.1 MD05G1107300.v1.1
prunus_persica	Prupe.8G151100_v2.0.a1 Prupe.8G151100_v2.0.a1 Prupe.8G151100_v2.0.a1 Prupe.8G151100_v2.0.a1 Prupe.8G151100_v2.0.a1 Prupe.8G151100_v2.0.a1 Prupe.8G151100_v2.0.a1
pyrus_communis	pycom05g10390 pycom10g09680
rosa_chinensis	RchiOBHm_Chr6g0247971
rosa_laevigata	RLG00000015166
rosa_multiflora	Rmu_sc0010633.1_g000004 Rmu_sc0030265.1_g000001
rosa_roxburghii	Rroxscaffold_179G00449310 Rroxscaffold_7G00213540
rosa_rugosa	Rorug05G0529900
rosa_samantha	Rh6AG044700 Rh6BG039700 Rh6CG038300 Rh6DG035300
rosa_wichuraiana	Rw6G003890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1147
AccB1I	GGYRCC	1 cut(s)	1147
AccI	GTMKAC	1 cut(s)	867
AciI	CCGC	2 cut(s)	91, 748
AcsI	RAATTY	4 cut(s)	254, 261, 468, 967
AcuI	CTGAAG	3 cut(s)	288, 383, 636
AcvI	CACGTG	1 cut(s)	593
AfaI	GTAC	2 cut(s)	952, 1149
AflIII	ACRYGT	1 cut(s)	590
AgsI	TTSAA	7 cut(s)	107, 328, 467, 479, 563, 704, 743
AhdI	GACNNNNNGTC	2 cut(s)	732, 1018
AjnI	CCWGG	1 cut(s)	1143
AjuI	GAANNNNNNNTTGG	2 cut(s)	651, 683
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	5 cut(s)	616, 719, 787, 1071, 1099
AlwNI	CAGNNNCTG	1 cut(s)	406
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	2 cut(s)	523, 763
ApoI	RAATTY	4 cut(s)	254, 261, 468, 967
ArsI	GACNNNNNNTTYG	4 cut(s)	227, 239, 259, 271
Asp700I	GAANNNNTTC	3 cut(s)	396, 483, 621
Asp718I	GGTACC	1 cut(s)	1147
AspS9I	GGNCC	1 cut(s)	88
AsuC2I	CCSGG	2 cut(s)	448, 449
AsuHPI	GGTGA	2 cut(s)	71, 1078
AsuNHI	GCTAGC	1 cut(s)	649
AvaI	CYCGRG	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	1147
BanII	GRGCYC	1 cut(s)	219
BbrPI	CACGTG	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	2 cut(s)	535, 775
BccI	CCATC	5 cut(s)	71, 182, 425, 1067, 1181
BceAI	ACGGC	1 cut(s)	785
BciT130I	CCWGG	1 cut(s)	1145
BcnI	CCSGG	2 cut(s)	448, 449
BcoDI	GTCTC	5 cut(s)	616, 719, 787, 1071, 1099
BfaI	CTAG	2 cut(s)	650, 776
BfmI	CTRYAG	1 cut(s)	761
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	2 cut(s)	524, 764
BlpI	GCTNAGC	1 cut(s)	804
BlsI	GCNGC	2 cut(s)	525, 765
Bme1390I	CCNGG	3 cut(s)	448, 449, 1145
BmeRI	GACNNNNNGTC	2 cut(s)	732, 1018
BmeT110I	CYCGRG	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	209, 1149
BmrFI	CCNGG	3 cut(s)	448, 449, 1145
BmsI	GCATC	6 cut(s)	9, 295, 628, 636, 844, 899
BmtI	GCTAGC	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	597
Bpu1102I	GCTNAGC	1 cut(s)	804
BpuEI	CTTGAG	1 cut(s)	1015
BpuMI	CCSGG	2 cut(s)	448, 449
BsaAI	YACGTR	1 cut(s)	593
BsaBI	GATNNNNATC	1 cut(s)	1191
BsaI	GGTCTC	1 cut(s)	1099
BsaJI	CCNNGG	1 cut(s)	447
BsaWI	WCCGGW	1 cut(s)	146
BsaXI	ACNNNNNCTCC	2 cut(s)	1068, 1098
Bse1I	ACTGG	2 cut(s)	536, 1167
Bse3DI	GCAATG	1 cut(s)	798
Bse8I	GATNNNNATC	1 cut(s)	1191
BseBI	CCWGG	1 cut(s)	1145
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	2 cut(s)	859, 1192
BseJI	GATNNNNATC	1 cut(s)	1191
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	3 cut(s)	588, 795, 1110
BseNI	ACTGG	2 cut(s)	536, 1167
BseXI	GCAGC	2 cut(s)	535, 775
BseYI	CCCAGC	1 cut(s)	653
BshFI	GGCC	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	1147
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	447
BsiSI	CCGG	2 cut(s)	147, 448
BsmAI	GTCTC	5 cut(s)	616, 719, 787, 1071, 1099
BsnI	GGCC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	1099
BsoBI	CYCGRG	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	4 cut(s)	121, 454, 754, 793
Bsp1720I	GCTNAGC	1 cut(s)	804
BspACI	CCGC	2 cut(s)	91, 748
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	3 cut(s)	589, 796, 1109
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	2 cut(s)	209, 1149
BspMAI	CTGCAG	1 cut(s)	765
BspOI	GCTAGC	1 cut(s)	653
BspT107I	GGYRCC	1 cut(s)	1147
BspTNI	GGTCTC	1 cut(s)	1099
BsrDI	GCAATG	1 cut(s)	798
BsrI	ACTGG	2 cut(s)	536, 1167
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	4 cut(s)	121, 454, 754, 793
BssNAI	GTATAC	1 cut(s)	868
Bst1107I	GTATAC	1 cut(s)	868
Bst2UI	CCWGG	1 cut(s)	1145
Bst4CI	ACNGT	3 cut(s)	493, 630, 1084
BstBAI	YACGTR	1 cut(s)	593
BstC8I	GCNNGC	3 cut(s)	46, 91, 651
BstDEI	CTNAG	3 cut(s)	597, 804, 1096
BstF5I	GGATG	2 cut(s)	859, 1192
BstKTI	GATC	4 cut(s)	124, 457, 757, 796
BstMAI	GTCTC	5 cut(s)	616, 719, 787, 1071, 1099
BstMBI	GATC	4 cut(s)	121, 454, 754, 793
BstMWI	GCNNNNNNNGC	4 cut(s)	532, 602, 769, 854
BstNI	CCWGG	1 cut(s)	1145
BstSCI	CCNGG	3 cut(s)	446, 447, 1143
BstSFI	CTRYAG	1 cut(s)	761
BstV1I	GCAGC	2 cut(s)	535, 775
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
BstZ17I	GTATAC	1 cut(s)	868
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	2 cut(s)	859, 1192
BtsI	GCAGTG	1 cut(s)	980
BtsIMutI	CAGTG	1 cut(s)	980
Cac8I	GCNNGC	3 cut(s)	46, 91, 651
CaiI	CAGNNNCTG	1 cut(s)	406
CciI	TCATGA	1 cut(s)	438
Cfr13I	GGNCC	1 cut(s)	88
Cfr9I	CCCGGG	1 cut(s)	447
Csp6I	GTAC	2 cut(s)	951, 1148
CviAII	CATG	7 cut(s)	289, 439, 568, 729, 886, 1015, 1200
CviQI	GTAC	2 cut(s)	951, 1148
DdeI	CTNAG	3 cut(s)	597, 804, 1096
DpnI	GATC	4 cut(s)	123, 456, 756, 795
DpnII	GATC	4 cut(s)	121, 454, 754, 793
DraI	TTTAAA	1 cut(s)	97
DriI	GACNNNNNGTC	2 cut(s)	732, 1018
Eam1105I	GACNNNNNGTC	2 cut(s)	732, 1018
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	1099
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	3 cut(s)	288, 383, 636
Eco72I	CACGTG	1 cut(s)	593
Eco88I	CYCGRG	1 cut(s)	447
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	1143
EcoT22I	ATGCAT	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	7 cut(s)	292, 442, 571, 732, 889, 1018, 1203
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	7 cut(s)	288, 438, 567, 728, 885, 1014, 1199
FauI	CCCGC	1 cut(s)	98
FblI	GTMKAC	1 cut(s)	867
Fnu4HI	GCNGC	2 cut(s)	524, 764
FokI	GGATG	2 cut(s)	866, 1179
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	524, 764
FspBI	CTAG	2 cut(s)	650, 776
GluI	GCNGC	2 cut(s)	524, 764
GsaI	CCCAGC	1 cut(s)	657
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	147, 448
Hin1II	CATG	7 cut(s)	292, 442, 571, 732, 889, 1018, 1203
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	9 cut(s)	143, 311, 435, 484, 563, 659, 733, 780, 1019
HpaII	CCGG	2 cut(s)	147, 448
HphI	GGTGA	2 cut(s)	71, 1078
Hpy166II	GTNNAC	3 cut(s)	231, 868, 1182
Hpy188I	TCNGA	9 cut(s)	247, 268, 402, 430, 616, 830, 966, 1009, 1099
Hpy188III	TCNNGA	1 cut(s)	439
Hpy8I	GTNNAC	3 cut(s)	231, 868, 1182
HpyAV	CCTTC	4 cut(s)	263, 407, 679, 710
HpyCH4III	ACNGT	3 cut(s)	493, 630, 1084
HpyCH4IV	ACGT	2 cut(s)	127, 592
HpyCH4V	TGCA	8 cut(s)	138, 167, 605, 635, 763, 816, 857, 973
HpyF10VI	GCNNNNNNNGC	4 cut(s)	532, 602, 769, 854
HpyF3I	CTNAG	3 cut(s)	597, 804, 1096
HpySE526I	ACGT	2 cut(s)	127, 592
Hsp92II	CATG	7 cut(s)	292, 442, 571, 732, 889, 1018, 1203
KpnI	GGTACC	1 cut(s)	1151
Kzo9I	GATC	4 cut(s)	121, 454, 754, 793
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	2 cut(s)	535, 775
LweI	GCATC	6 cut(s)	9, 295, 628, 636, 844, 899
MaeI	CTAG	2 cut(s)	650, 776
MaeII	ACGT	2 cut(s)	127, 592
MaeIII	GTNAC	3 cut(s)	900, 982, 1102
MalI	GATC	4 cut(s)	123, 456, 756, 795
MboI	GATC	4 cut(s)	121, 454, 754, 793
MboII	GAAGA	2 cut(s)	422, 749
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	8 cut(s)	27, 254, 261, 468, 540, 817, 858, 967
MlyI	GAGTC	5 cut(s)	137, 444, 742, 789, 1028
MmeI	TCCRAC	2 cut(s)	512, 808
MnlI	CCTC	5 cut(s)	198, 347, 493, 592, 930
Mph1103I	ATGCAT	1 cut(s)	140
MroXI	GAANNNNTTC	3 cut(s)	396, 483, 621
MseI	TTAA	2 cut(s)	51, 96
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	2 cut(s)	147, 448
MspR9I	CCNGG	3 cut(s)	448, 449, 1145
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	1145
MwoI	GCNNNNNNNGC	4 cut(s)	532, 602, 769, 854
NciI	CCSGG	2 cut(s)	448, 449
NdeII	GATC	4 cut(s)	121, 454, 754, 793
NheI	GCTAGC	1 cut(s)	649
NlaIII	CATG	7 cut(s)	292, 442, 571, 732, 889, 1018, 1203
NlaIV	GGNNCC	2 cut(s)	209, 1149
NmuCI	GTSAC	2 cut(s)	900, 1102
NsiI	ATGCAT	1 cut(s)	140
PagI	TCATGA	1 cut(s)	438
PdmI	GAANNNNTTC	3 cut(s)	396, 483, 621
PfeI	GAWTC	4 cut(s)	311, 484, 563, 659
PkrI	GCNGC	2 cut(s)	525, 765
PleI	GAGTC	5 cut(s)	137, 443, 741, 788, 1027
PmaCI	CACGTG	1 cut(s)	593
PmlI	CACGTG	1 cut(s)	593
PpsI	GAGTC	5 cut(s)	137, 443, 741, 788, 1027
Ppu21I	YACGTR	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	1143
PspCI	CACGTG	1 cut(s)	593
PspFI	CCCAGC	1 cut(s)	653
PspGI	CCWGG	1 cut(s)	1143
PspN4I	GGNNCC	2 cut(s)	209, 1149
PspPI	GGNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	765
PstNI	CAGNNNCTG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	754
RsaI	GTAC	2 cut(s)	952, 1149
RsaNI	GTAC	2 cut(s)	951, 1148
RseI	CAYNNNNRTG	1 cut(s)	53
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	51, 96
SatI	GCNGC	2 cut(s)	524, 764
Sau3AI	GATC	4 cut(s)	121, 454, 754, 793
Sau96I	GGNCC	1 cut(s)	88
SchI	GAGTC	5 cut(s)	137, 444, 742, 789, 1028
ScrFI	CCNGG	3 cut(s)	448, 449, 1145
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	6 cut(s)	9, 295, 628, 636, 844, 899
SfcI	CTRYAG	1 cut(s)	761
SmaI	CCCGGG	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	1030
SmoI	CTYRAG	1 cut(s)	1030
Sse9I	AATT	8 cut(s)	27, 254, 261, 468, 540, 817, 858, 967
SsiI	CCGC	2 cut(s)	91, 748
SspMI	CTAG	2 cut(s)	650, 776
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	3 cut(s)	446, 447, 1143
TaaI	ACNGT	3 cut(s)	493, 630, 1084
TaiI	ACGT	2 cut(s)	130, 595
TaqI	TCGA	3 cut(s)	252, 420, 625
TasI	AATT	8 cut(s)	27, 254, 261, 468, 540, 817, 858, 967
TfiI	GAWTC	4 cut(s)	311, 484, 563, 659
Tru1I	TTAA	2 cut(s)	51, 96
Tru9I	TTAA	2 cut(s)	51, 96
TscAI	CASTG	1 cut(s)	980
TseFI	GTSAC	2 cut(s)	900, 1102
TseI	GCWGC	2 cut(s)	523, 763
Tsp45I	GTSAC	2 cut(s)	900, 1102
TspDTI	ATGAA	2 cut(s)	78, 989
TspGWI	ACGGA	1 cut(s)	894
TspMI	CCCGGG	1 cut(s)	447
TspRI	CASTG	1 cut(s)	980
XapI	RAATTY	4 cut(s)	254, 261, 468, 967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	718
XmaI	CCCGGG	1 cut(s)	447
XmiI	GTMKAC	1 cut(s)	867
XmnI	GAANNNNTTC	3 cut(s)	396, 483, 621
XspI	CTAG	2 cut(s)	650, 776
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.