Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

71884787 .. 71887085

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0529900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCCATCAGCATAGTAGACCACGAATTGCCATACGACACCCACAATCTCTACGATGTAACATTTTACGATGATCAAATCCACACCCTAGTCACTCACAGCGCACCCATGGTGGAATCCTGGCTCTCTGAAATCATGCCCATAATCAATGAAAACCCAATTGTAGGCCTGGACGTGGAGTGGCGTCCTAATTTTAACAGCAACAGCGACCACCCAATTGCGACCTTGCAGCTTTGTGTGGACCATCGTTGCCTCATCTTCCAACTCATCCACGCCCAGAACATCCCACAATCACTCTTTGATTTTCTTGCTAATGGCAGTTACAAATTTGTGGGTGCTGGGATCCAGAATGATACAGAGAAGCTCCTTCTGGACTATGACTTGAAGGTGACCAATACTGTTAATCTTGGGGCTTTGGCAGCGACTAAATTGGGTAAGGAGTTGAAGAATGCTGGGTTGAAGGGCCTGTCTAAAGAGGTGCTTAGGAAGGAGCTCCAGAAGCCTAAAAAGGTGACATTGAGTAGGTGGGATAATGAGTGGCTCACTTTTAATCAGGTTCAGTATGCTTGTATTGATGCTTTTATTTCCTCTGAGATTGGGAGGCAGTTAACTGCCATGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

207

Amino Acids

23.44

Weight (kDa)

5.28

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	43 - 204	1.2e-15	3'-5' exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AclWI	GGATC	2 cut(s)	337, 350
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	164, 175
AgsI	TTSAA	3 cut(s)	385, 445, 460
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	119, 168
AluBI	AGCT	3 cut(s)	232, 364, 493
AluI	AGCT	3 cut(s)	232, 364, 493
Alw21I	GWGCWC	1 cut(s)	495
AlwI	GGATC	2 cut(s)	337, 350
AoxI	GGCC	3 cut(s)	3, 166, 463
ApeKI	GCWGC	2 cut(s)	229, 419
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	241, 463
AsuHPI	GGTGA	2 cut(s)	400, 523
AvaII	GGWCC	1 cut(s)	241
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	495
BbvI	GCAGC	2 cut(s)	241, 431
BccI	CCATC	2 cut(s)	14, 252
BciT130I	CCWGG	2 cut(s)	121, 170
BclI	TGATCA	1 cut(s)	73
BfaI	CTAG	1 cut(s)	89
BisI	GCNGC	2 cut(s)	230, 420
BlsI	GCNGC	2 cut(s)	231, 421
Bme1390I	CCNGG	2 cut(s)	121, 170
Bme18I	GGWCC	1 cut(s)	241
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	241, 463
BmiI	GGNNCC	1 cut(s)	344
BmrFI	CCNGG	2 cut(s)	121, 170
BmsI	GCATC	1 cut(s)	565
BpmI	CTGGAG	1 cut(s)	479
Bpu10I	CCTNAGC	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	184
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 175
BseBI	CCWGG	2 cut(s)	121, 170
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	267, 282
BseLI	CCNNNNNNNGG	2 cut(s)	164, 175
BseMII	CTCAG	1 cut(s)	582
BseXI	GCAGC	2 cut(s)	241, 431
BseYI	CCCAGC	2 cut(s)	338, 452
BshFI	GGCC	3 cut(s)	5, 168, 465
BsiHKAI	GWGCWC	1 cut(s)	495
BslI	CCNNNNNNNGG	2 cut(s)	164, 175
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	5, 168, 465
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp143I	GATC	2 cut(s)	73, 342
Bsp19I	CCATGG	1 cut(s)	108
BspANI	GGCC	3 cut(s)	5, 168, 465
BspCNI	CTCAG	1 cut(s)	583
BspLI	GGNNCC	1 cut(s)	344
BspPI	GGATC	2 cut(s)	337, 350
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	73, 342
BssNI	GRCGYC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	121, 170
Bst4CI	ACNGT	1 cut(s)	400
BstACI	GRCGYC	1 cut(s)	184
BstDEI	CTNAG	2 cut(s)	482, 591
BstDSI	CCRYGG	1 cut(s)	108
BstEII	GGTNACC	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	267, 282
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	2 cut(s)	76, 345
BstMBI	GATC	2 cut(s)	73, 342
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 499
BstNI	CCWGG	2 cut(s)	121, 170
BstPI	GGTNACC	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	119, 168
BstV1I	GCAGC	2 cut(s)	241, 431
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BsuRI	GGCC	3 cut(s)	5, 168, 465
BtgI	CCRYGG	1 cut(s)	108
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	267, 282
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	241, 463
CseI	GACGC	1 cut(s)	173
CviAII	CATG	3 cut(s)	109, 136, 616
DdeI	CTNAG	2 cut(s)	482, 591
DpnI	GATC	2 cut(s)	75, 344
DpnII	GATC	2 cut(s)	73, 342
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	493
Eco91I	GGTNACC	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	493
EcoO109I	RGGNCCY	1 cut(s)	463
EcoO65I	GGTNACC	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	119, 168
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	3 cut(s)	112, 139, 619
FaiI	YATR	8 cut(s)	14, 34, 110, 137, 143, 378, 564, 617
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FatI	CATG	3 cut(s)	108, 135, 615
FbaI	TGATCA	1 cut(s)	73
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	230, 420
FokI	GGATG	2 cut(s)	254, 269
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	2 cut(s)	230, 420
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	2 cut(s)	230, 420
GsaI	CCCAGC	2 cut(s)	342, 456
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	3 cut(s)	5, 168, 465
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	3 cut(s)	112, 139, 619
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	609
HindII	GTYRAC	1 cut(s)	609
HinfI	GANTC	1 cut(s)	116
HpaI	GTTAAC	1 cut(s)	609
HphI	GGTGA	2 cut(s)	400, 523
Hpy166II	GTNNAC	3 cut(s)	19, 241, 609
Hpy188I	TCNGA	2 cut(s)	130, 592
Hpy188III	TCNNGA	3 cut(s)	346, 371, 496
Hpy8I	GTNNAC	3 cut(s)	19, 241, 609
HpyAV	CCTTC	4 cut(s)	377, 379, 454, 481
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 499
HpyF3I	CTNAG	2 cut(s)	482, 591
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	112, 139, 619
HspAI	GCGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	73
KspAI	GTTAAC	1 cut(s)	609
Kzo9I	GATC	2 cut(s)	73, 342
LmnI	GCTCC	3 cut(s)	369, 490, 498
Lsp1109I	GCAGC	2 cut(s)	241, 431
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	5 cut(s)	58, 91, 320, 388, 511
MalI	GATC	2 cut(s)	75, 344
MboI	GATC	2 cut(s)	73, 342
MboII	GAAGA	2 cut(s)	250, 457
MfeI	CAATTG	2 cut(s)	159, 216
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	495
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	26, 159, 190, 216, 326, 428
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	286
MnlI	CCTC	4 cut(s)	263, 469, 594, 598
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	195, 402, 549, 608
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	121, 170
MunI	CAATTG	2 cut(s)	159, 216
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	121, 170
MwoI	GCNNNNNNNGC	2 cut(s)	419, 499
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	2 cut(s)	73, 342
NlaIII	CATG	3 cut(s)	112, 139, 619
NlaIV	GGNNCC	1 cut(s)	344
NmuCI	GTSAC	3 cut(s)	91, 388, 511
PceI	AGGCCT	1 cut(s)	168
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	2 cut(s)	231, 421
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	119, 168
PspEI	GGTNACC	1 cut(s)	388
PspFI	CCCAGC	2 cut(s)	338, 452
PspGI	CCWGG	2 cut(s)	119, 168
PspN4I	GGNNCC	1 cut(s)	344
PspPI	GGNCC	2 cut(s)	241, 463
PsuI	RGATCY	1 cut(s)	342
SacI	GAGCTC	1 cut(s)	495
SaqAI	TTAA	4 cut(s)	195, 402, 549, 608
SatI	GCNGC	2 cut(s)	230, 420
Sau3AI	GATC	2 cut(s)	73, 342
Sau96I	GGNCC	2 cut(s)	241, 463
ScrFI	CCNGG	2 cut(s)	121, 170
SduI	GDGCHC	1 cut(s)	495
SfaNI	GCATC	1 cut(s)	565
SinI	GGWCC	1 cut(s)	241
Sse9I	AATT	6 cut(s)	26, 159, 190, 216, 326, 428
SseBI	AGGCCT	1 cut(s)	168
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	495
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	119, 168
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	1 cut(s)	177
TasI	AATT	6 cut(s)	26, 159, 190, 216, 326, 428
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	4 cut(s)	195, 402, 549, 608
Tru9I	TTAA	4 cut(s)	195, 402, 549, 608
TseFI	GTSAC	3 cut(s)	91, 388, 511
TseI	GCWGC	2 cut(s)	229, 419
Tsp45I	GTSAC	3 cut(s)	91, 388, 511
TspDTI	ATGAA	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	241
XapI	RAATTY	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.