Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

1423857 .. 1425643

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46183

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGGAGTCAAAAACAATCCACCTGATCCTCCTCTTCATCTTCATTTCTCCTCAGTTTCATTCTTCATATGCACAAACATGGATTAGAGCTGGTTACTGGTATGCCAGCGGTGAGTCTCCTATTCCTGACATAAACTCTGCCTTGTTTACTCATCTTATATGTGGTTTTGCCAATGTAAGTTCCTCCAGCTACCAGCTCATCATTCCCTCAGCTGATCAGCAGTACTACTCCAGCTTCACCGAAATCGTTAAGCGAAAAAACCCATCAATCATCACACTCCTGTCCATCTGGAATGGACAAGCTTCAACAGCTCAAGGAATATTGGGTGAAAAGGTCAACTCATCAGTCTTGTCCTCCATGCTCAATCAATCTTCTAGCAGAAGTTCTTTCATTGAGTCTTCAATCCAAATCGCAAGGCGCTATGGCTTTTGGGGTATAGACTTGTTTTGGCTGTGGCCTAACACAGAAGCAGATATGATCAACTTGGGAAAGCTGTTGGATGAATGGAGAGCTGCTGTGGATTCTGAGCCAAGAAACTCAAGTCTGTCGAAATTAATGCTGACAATGGCTGTTAAATATGTGCCTTCTTTCGGATCAATGACTTATCCGATTGAGTCTATGAAGAAGAACTTGGATTTTGCACATGTGGTGGCATATGACTATCATCTGCCTTTGAAGGAAAATGTTACTGGTGCTCATGCTGCTCTGTATAACCCAACAAGTCATGTTAATACAGACTATGGTATAAGGCAGTGGCTAAACAATTCATTTCCTGCTAGCAAACTGGTTATGGGATTGCCTTACCATGGCTATGCGTGGACTCTTGCGAACCCGAATGACAATGGAATTGGAGCGCCTGCAGCTGGTGTAGCTGTGACACAAGATGGTTCCATGAGCTATAAGTACATCAAGTGGTATACTCGAAGCTACGAAGCTAAAATAATGTATAATGCTAGTTATGTTGTGAATTACTGCATCATTGGATTGAACTGGATTGGATTTGATGATGTTGAAGCTATCAGAGCTAAGATTGCATATGCCAAGGAAAAGAAGCTACTTGGTTACAATGTGTTTGTAGTCACCAATGATGACAACTGGGCGCTTTCTTGGGCAGCTCAGGATGAAGAAAATGCTCACGGAAAGAAGAGGCGGTTATTGCTGATAATTTTCCTTCCAATTACTATGATCATCATCCTCATAGCATCTGTGGTGTGTTACCTGCAAAGAAAATTGTTGAAGACAAAAGGTTCTAATATCAATTATATCATGCTCAATAGAAGTTTTTTAGTTAGTATGCACATACATGCAACAGATATGCATTTTCATTTTGTTATTTGGTATCTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

449

Amino Acids

50.92

Weight (kDa)

8.79

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	30 - 363	1.1e-59	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1227
AccI	GTMKAC	1 cut(s)	917
AciI	CCGC	2 cut(s)	108, 1150
AclWI	GGATC	2 cut(s)	19, 601
AfaI	GTAC	2 cut(s)	224, 905
AfiI	CCNNNNNNNGG	3 cut(s)	590, 806, 863
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	6 cut(s)	306, 402, 676, 988, 1013, 1237
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	19, 601
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	4 cut(s)	512, 701, 860, 1112
AseI	ATTAAT	1 cut(s)	554
AspLEI	GCGC	3 cut(s)	420, 856, 1102
AsuHPI	GGTGA	4 cut(s)	122, 229, 338, 1072
AsuNHI	GCTAGC	1 cut(s)	776
BbsI	GAAGAC	2 cut(s)	390, 1244
Bbv12I	GWGCWC	1 cut(s)	697
BbvCI	CCTCAGC	1 cut(s)	208
BbvI	GCAGC	4 cut(s)	499, 688, 872, 1124
BccI	CCATC	3 cut(s)	271, 293, 878
BcgI	CGANNNNNNTGC	2 cut(s)	538, 572
BclI	TGATCA	3 cut(s)	214, 477, 1185
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	3 cut(s)	375, 777, 954
BfmI	CTRYAG	1 cut(s)	858
BfoI	RGCGCY	3 cut(s)	421, 857, 1103
BfuAI	ACCTGC	1 cut(s)	1227
BisI	GCNGC	4 cut(s)	513, 702, 861, 1113
BlsI	GCNGC	4 cut(s)	514, 703, 862, 1114
BmcAI	AGTACT	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	889
BmrI	ACTGGG	1 cut(s)	1105
BmsI	GCATC	2 cut(s)	984, 1211
BmtI	GCTAGC	1 cut(s)	780
BmuI	ACTGGG	1 cut(s)	1105
BpiI	GAAGAC	2 cut(s)	390, 1244
BpmI	CTGGAG	2 cut(s)	169, 214
Bpu10I	CCTNAGC	2 cut(s)	208, 1116
BpuEI	CTTGAG	2 cut(s)	297, 523
BsaBI	GATNNNNATC	1 cut(s)	1190
BsaJI	CCNNGG	2 cut(s)	805, 1041
Bsc4I	CCNNNNNNNGG	3 cut(s)	590, 806, 863
Bse1I	ACTGG	5 cut(s)	101, 694, 789, 995, 1100
Bse8I	GATNNNNATC	1 cut(s)	1190
BseDI	CCNNGG	2 cut(s)	805, 1041
BseGI	GGATG	3 cut(s)	505, 1126, 1191
BseJI	GATNNNNATC	1 cut(s)	1190
BseLI	CCNNNNNNNGG	3 cut(s)	590, 806, 863
BseMII	CTCAG	4 cut(s)	65, 222, 516, 1130
BseNI	ACTGG	5 cut(s)	101, 694, 789, 995, 1100
BseRI	GAGGAG	2 cut(s)	20, 39
BseXI	GCAGC	4 cut(s)	499, 688, 872, 1124
BshFI	GGCC	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	697
BslI	CCNNNNNNNGG	3 cut(s)	590, 806, 863
BsmAI	GTCTC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	5 cut(s)	24, 214, 477, 593, 1185
Bsp19I	CCATGG	1 cut(s)	805
BspACI	CCGC	2 cut(s)	108, 1150
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	4 cut(s)	64, 221, 517, 1129
BspLI	GGNNCC	1 cut(s)	889
BspMAI	CTGCAG	1 cut(s)	862
BspMI	ACCTGC	1 cut(s)	1227
BspOI	GCTAGC	1 cut(s)	780
BspPI	GGATC	2 cut(s)	19, 601
BsrI	ACTGG	5 cut(s)	101, 694, 789, 995, 1100
BssECI	CCNNGG	2 cut(s)	805, 1041
BssMI	GATC	5 cut(s)	24, 214, 477, 593, 1185
BssNAI	GTATAC	1 cut(s)	918
BssT1I	CCWWGG	2 cut(s)	805, 1041
Bst1107I	GTATAC	1 cut(s)	918
Bst6I	CTCTTC	2 cut(s)	38, 1139
BstC8I	GCNNGC	3 cut(s)	106, 778, 858
BstDEI	CTNAG	5 cut(s)	51, 208, 525, 1026, 1116
BstDSI	CCRYGG	1 cut(s)	805
BstF5I	GGATG	3 cut(s)	505, 1126, 1191
BstH2I	RGCGCY	3 cut(s)	421, 857, 1103
BstHHI	GCGC	3 cut(s)	420, 856, 1102
BstKTI	GATC	5 cut(s)	27, 217, 480, 596, 1188
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	5 cut(s)	24, 214, 477, 593, 1185
BstMWI	GCNNNNNNNGC	7 cut(s)	308, 701, 860, 869, 1022, 1031, 1156
BstNSI	RCATGY	2 cut(s)	647, 1307
BstSFI	CTRYAG	1 cut(s)	858
BstV1I	GCAGC	4 cut(s)	499, 688, 872, 1124
BstV2I	GAAGAC	2 cut(s)	390, 1244
BstZ17I	GTATAC	1 cut(s)	918
BsuRI	GGCC	1 cut(s)	457
BtgI	CCRYGG	1 cut(s)	805
BtsCI	GGATG	3 cut(s)	505, 1126, 1191
BtsI	GCAGTG	1 cut(s)	758
BtsIMutI	CAGTG	1 cut(s)	758
BveI	ACCTGC	1 cut(s)	1227
Cac8I	GCNNGC	3 cut(s)	106, 778, 858
CfoI	GCGC	3 cut(s)	420, 856, 1102
Csp6I	GTAC	2 cut(s)	223, 904
CviAII	CATG	9 cut(s)	78, 358, 644, 698, 725, 806, 892, 1267, 1304
CviQI	GTAC	2 cut(s)	223, 904
DdeI	CTNAG	5 cut(s)	51, 208, 525, 1026, 1116
DpnI	GATC	5 cut(s)	26, 216, 479, 595, 1187
DpnII	GATC	5 cut(s)	24, 214, 477, 593, 1185
Eam1104I	CTCTTC	2 cut(s)	38, 1139
EarI	CTCTTC	2 cut(s)	38, 1139
Eco130I	CCWWGG	2 cut(s)	805, 1041
EcoT14I	CCWWGG	2 cut(s)	805, 1041
EcoT22I	ATGCAT	1 cut(s)	1320
ErhI	CCWWGG	2 cut(s)	805, 1041
FaeI	CATG	9 cut(s)	81, 361, 647, 701, 728, 809, 895, 1270, 1307
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FatI	CATG	9 cut(s)	77, 357, 643, 697, 724, 805, 891, 1266, 1303
FauNDI	CATATG	3 cut(s)	67, 655, 1036
FbaI	TGATCA	3 cut(s)	214, 477, 1185
FblI	GTMKAC	1 cut(s)	917
Fnu4HI	GCNGC	4 cut(s)	513, 702, 861, 1113
FokI	GGATG	3 cut(s)	512, 1133, 1178
Fsp4HI	GCNGC	4 cut(s)	513, 702, 861, 1113
FspBI	CTAG	3 cut(s)	375, 777, 954
GlaI	GCGC	3 cut(s)	419, 855, 1101
GluI	GCNGC	4 cut(s)	513, 702, 861, 1113
GsuI	CTGGAG	2 cut(s)	169, 214
HaeII	RGCGCY	3 cut(s)	421, 857, 1103
HaeIII	GGCC	1 cut(s)	457
HhaI	GCGC	3 cut(s)	420, 856, 1102
Hin1II	CATG	9 cut(s)	81, 361, 647, 701, 728, 809, 895, 1270, 1307
Hin6I	GCGC	3 cut(s)	418, 854, 1100
HinP1I	GCGC	3 cut(s)	418, 854, 1100
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	6 cut(s)	5, 113, 395, 521, 614, 820
HphI	GGTGA	4 cut(s)	122, 229, 338, 1072
Hpy166II	GTNNAC	4 cut(s)	147, 337, 819, 918
Hpy188I	TCNGA	5 cut(s)	526, 593, 609, 1022, 1349
Hpy188III	TCNNGA	3 cut(s)	125, 289, 1118
Hpy8I	GTNNAC	4 cut(s)	147, 337, 819, 918
HpyAV	CCTTC	3 cut(s)	594, 670, 1181
HpyCH4V	TGCA	9 cut(s)	71, 641, 860, 975, 1034, 1222, 1297, 1307, 1318
HpyF10VI	GCNNNNNNNGC	7 cut(s)	308, 701, 860, 869, 1022, 1031, 1156
HpyF3I	CTNAG	5 cut(s)	51, 208, 525, 1026, 1116
Hsp92II	CATG	9 cut(s)	81, 361, 647, 701, 728, 809, 895, 1270, 1307
HspAI	GCGC	3 cut(s)	418, 854, 1100
Ksp22I	TGATCA	3 cut(s)	214, 477, 1185
Kzo9I	GATC	5 cut(s)	24, 214, 477, 593, 1185
LmnI	GCTCC	1 cut(s)	851
Lsp1109I	GCAGC	4 cut(s)	499, 688, 872, 1124
LweI	GCATC	2 cut(s)	984, 1211
MaeI	CTAG	3 cut(s)	375, 777, 954
MaeIII	GTNAC	6 cut(s)	92, 685, 874, 1061, 1078, 1214
MalI	GATC	5 cut(s)	26, 216, 479, 595, 1187
MboI	GATC	5 cut(s)	24, 214, 477, 593, 1185
MhlI	GDGCHC	1 cut(s)	697
MluCI	AATT	8 cut(s)	551, 763, 846, 967, 1164, 1176, 1229, 1258
MlyI	GAGTC	5 cut(s)	14, 122, 404, 623, 814
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	8 cut(s)	38, 41, 60, 193, 217, 364, 1140, 1205
Mph1103I	ATGCAT	1 cut(s)	1320
MseI	TTAA	4 cut(s)	249, 554, 573, 729
MslI	CAYNNNNRTG	3 cut(s)	76, 810, 1302
MspA1I	CMGCKG	3 cut(s)	108, 212, 863
MwoI	GCNNNNNNNGC	7 cut(s)	308, 701, 860, 869, 1022, 1031, 1156
NcoI	CCATGG	1 cut(s)	805
NdeI	CATATG	3 cut(s)	67, 655, 1036
NdeII	GATC	5 cut(s)	24, 214, 477, 593, 1185
NheI	GCTAGC	1 cut(s)	776
NlaIII	CATG	9 cut(s)	81, 361, 647, 701, 728, 809, 895, 1270, 1307
NlaIV	GGNNCC	1 cut(s)	889
NmuCI	GTSAC	2 cut(s)	874, 1078
NsiI	ATGCAT	1 cut(s)	1320
NspI	RCATGY	2 cut(s)	647, 1307
PciI	ACATGT	1 cut(s)	643
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	4 cut(s)	514, 703, 862, 1114
PleI	GAGTC	5 cut(s)	13, 121, 403, 622, 814
PpsI	GAGTC	5 cut(s)	13, 121, 403, 622, 814
PscI	ACATGT	1 cut(s)	643
PshBI	ATTAAT	1 cut(s)	554
PspN4I	GGNNCC	1 cut(s)	889
PstI	CTGCAG	1 cut(s)	862
PvuII	CAGCTG	2 cut(s)	212, 863
RsaI	GTAC	2 cut(s)	224, 905
RsaNI	GTAC	2 cut(s)	223, 904
RseI	CAYNNNNRTG	3 cut(s)	76, 810, 1302
SaqAI	TTAA	4 cut(s)	249, 554, 573, 729
SatI	GCNGC	4 cut(s)	513, 702, 861, 1113
Sau3AI	GATC	5 cut(s)	24, 214, 477, 593, 1185
ScaI	AGTACT	1 cut(s)	224
SchI	GAGTC	5 cut(s)	14, 122, 404, 623, 814
SduI	GDGCHC	1 cut(s)	697
SfaNI	GCATC	2 cut(s)	984, 1211
SfcI	CTRYAG	1 cut(s)	858
SmiMI	CAYNNNNRTG	3 cut(s)	76, 810, 1302
SmlI	CTYRAG	2 cut(s)	312, 538
SmoI	CTYRAG	2 cut(s)	312, 538
Sse9I	AATT	8 cut(s)	551, 763, 846, 967, 1164, 1176, 1229, 1258
SsiI	CCGC	2 cut(s)	108, 1150
SspI	AATATT	1 cut(s)	321
SspMI	CTAG	3 cut(s)	375, 777, 954
StyI	CCWWGG	2 cut(s)	805, 1041
TaqI	TCGA	2 cut(s)	548, 922
TasI	AATT	8 cut(s)	551, 763, 846, 967, 1164, 1176, 1229, 1258
TatI	WGTACW	2 cut(s)	222, 903
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	4 cut(s)	249, 554, 573, 729
Tru9I	TTAA	4 cut(s)	249, 554, 573, 729
TscAI	CASTG	1 cut(s)	758
TseFI	GTSAC	2 cut(s)	874, 1078
TseI	GCWGC	4 cut(s)	512, 701, 860, 1112
Tsp45I	GTSAC	2 cut(s)	874, 1078
TspGWI	ACGGA	1 cut(s)	1152
TspRI	CASTG	1 cut(s)	758
VspI	ATTAAT	1 cut(s)	554
XceI	RCATGY	2 cut(s)	647, 1307
XmiI	GTMKAC	1 cut(s)	917
XspI	CTAG	3 cut(s)	375, 777, 954
ZrmI	AGTACT	1 cut(s)	224
Zsp2I	ATGCAT	1 cut(s)	1320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.