MD15G1156700.v1.1

Cysteine-rich receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
11625763 .. 11628805
3043 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1156700.v1.1.491

Sequence Viewer

Length: 1356 bp
ATGGTGGTTAGGAATTTGGATTGGGCGCATGTTGCGGCATATGACTACCATCTTCCCTTAAAGGAGAATGTTACTGGTGCTCATGCTGCTTTATATGATCCTTCGAGCTATGTTAACACCGACTATGGGATAAAGCAATGGTTAAACTACTCATTTCCGGCCAGCAAACTGGTTTTGGGTTTGCCTTACCACAGCTATGCGTGGACAATTGCAAACCCCAAAGGCAATAGTGGAATCGGGGCACCTGCATCTGGCTTTGCTGTGACAAAAGATGGATCAATGAGCTATAAGCTCATCAAGTGGTACACTCGAAGCTACGGAGGGCTCATAGCGTATAATGATACTTATGTCGTGAATTACTGCACGGAGGAAGGAAATGATCACGAAAAGAAACCCCGGTTACTGCTTGTAATAGTGCTATCAGTTACTTCGGTCGTAATTCTCATAGCTTTCGTGGTGTGTTTCTGGCAGAGAGAACTATTGAAGACAAGAGGGATGATTGTTCTAGGCAGATCTAGGTCTACTAGTACATCGGCTGTTGACAGTGATGCTCCGAATTTGAAAGTATACCGCTTTTCCAGTCTCAAAGTGGCTACAAATAACTTCTCAAGTGAAAACAAACTTGGAGAGGGAGGGTGGATTTGGTCCCGTTTACAAGATCCTACCAGACGGTATTTCATGGATTGGGGAAAGCGTGTGCACATCATCGAAGGCGTTACTCAAGGACTCTTATATCTTCAAGAATACTCAAACTTCACAATCATTCACCGTGATCTAAAAGCTAGCAACATTTTGCTTGATGACGAGATGAATGCTAAGATTTCTGATTTTGGAATGGCCAAACTTTTCAGAAAGGATGAACTCGAAGGAAACACAAGGCGGATTGTTGGCACATATGGCTACGTACCTCCTGAATACGTACGAAAAGGCATATACTCTATGAAGTACGACGTCTACAGCTTCGGAGTTCTACTTTTGCAAATGATTAGCGGACGGAAGAGTACACATTACTATGGTCCGAACGAAAGTATGCACCTCTTGGAATATGCATATGTATCATGGAAAGAGGACAAAGGACTGGATTTTATCGATCCGTCACTTGACGATTCTTCTTCTTCTTGTAAGTTATTGAGATGCTTGCAAGTGGCACTGCTCTGTGTCCAGGAAAATGCCGACGATAGGCCTACAATGCTGGAAGTTTATTCCATGCTCATATCTGACACTCAAGCCGTTCCAACTCCTACAAAGACGGCTTTCTCAGTGAAAAATTACGACAACGTGGACAACCTATGTACCCTGCAGCCAGGAAATTGTTCGGTTAATGATGCTCAGATCTCCGAACTCCAACCCCGATGA

Protein Analysis

452

Amino Acids

50.99

Weight (kDa)

7.09

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 3 - 124 1.6e-16 Glycosyl hydrolases family 18
Pkinase PF00069 227 - 400 1e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 228 - 403 7.8e-23 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 253
AatII GACGTC 1 cut(s) 954
Acc36I ACCTGC 1 cut(s) 253
AccB1I GGYRCC 1 cut(s) 241
AccI GTMKAC 3 cut(s) 521, 567, 954
AciI CCGC 4 cut(s) 35, 571, 880, 990
AclWI GGATC 4 cut(s) 92, 283, 653, 1085
AcoI YGGCCR 2 cut(s) 159, 837
AcsI RAATTY 2 cut(s) 13, 556
AcyI GRCGYC 1 cut(s) 951
AfaI GTAC 7 cut(s) 305, 529, 906, 921, 947, 1003, 1294
AfiI CCNNNNNNNGG 3 cut(s) 126, 251, 1179
AgsI TTSAA 3 cut(s) 484, 562, 740
AhlI ACTAGT 1 cut(s) 524
AjnI CCWGG 2 cut(s) 1161, 1303
AjuI GAANNNNNNNTTGG 2 cut(s) 606, 638
AluBI AGCT 8 cut(s) 108, 195, 285, 292, 315, 449, 782, 960
AluI AGCT 8 cut(s) 108, 195, 285, 292, 315, 449, 782, 960
Alw21I GWGCWC 2 cut(s) 82, 702
Alw26I GTCTC 1 cut(s) 587
Alw44I GTGCAC 1 cut(s) 698
AlwI GGATC 4 cut(s) 92, 283, 653, 1085
AoxI GGCC 3 cut(s) 159, 837, 1181
ApaLI GTGCAC 1 cut(s) 698
ApeKI GCWGC 2 cut(s) 86, 1300
ApoI RAATTY 2 cut(s) 13, 556
Asp700I GAANNNNTTC 1 cut(s) 1312
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 645, 1016
AsuC2I CCSGG 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 758
AsuNHI GCTAGC 1 cut(s) 782
AvaII GGWCC 2 cut(s) 645, 1016
BaeGI GKGCMC 2 cut(s) 244, 702
BaeI ACNNNNGTAYC 4 cut(s) 333, 366, 1276, 1309
BalI TGGCCA 1 cut(s) 839
BanI GGYRCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 491
Bbv12I GWGCWC 2 cut(s) 82, 702
BbvI GCAGC 2 cut(s) 73, 1312
BccI CCATC 2 cut(s) 57, 266
BceAI ACGGC 2 cut(s) 1214, 1266
BcgI CGANNNNNNTGC 2 cut(s) 794, 828
BciT130I CCWGG 2 cut(s) 1163, 1305
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 587
BcuI ACTAGT 1 cut(s) 524
BfaI CTAG 4 cut(s) 506, 516, 525, 783
BfmI CTRYAG 2 cut(s) 955, 1298
BfuAI ACCTGC 1 cut(s) 253
BglII AGATCT 2 cut(s) 512, 1332
BisI GCNGC 3 cut(s) 36, 87, 1301
BlsI GCNGC 3 cut(s) 37, 88, 1302
Bme1390I CCNGG 3 cut(s) 397, 1163, 1305
Bme18I GGWCC 2 cut(s) 645, 1016
BmgT120I GGNCC 2 cut(s) 645, 1016
BmiI GGNNCC 2 cut(s) 243, 647
BmrFI CCNGG 3 cut(s) 397, 1163, 1305
BmsI GCATC 4 cut(s) 257, 538, 1124, 1315
BmtI GCTAGC 1 cut(s) 786
BpiI GAAGAC 1 cut(s) 491
BpuEI CTTGAG 3 cut(s) 592, 705, 1209
BpuMI CCSGG 1 cut(s) 397
Bsa29I ATCGAT 1 cut(s) 1089
BsaAI YACGTR 2 cut(s) 904, 919
BsaHI GRCGYC 1 cut(s) 951
BsaJI CCNNGG 1 cut(s) 395
Bsc4I CCNNNNNNNGG 3 cut(s) 126, 251, 1179
Bse1I ACTGG 4 cut(s) 79, 174, 579, 1083
Bse3DI GCAATG 1 cut(s) 143
BseBI CCWGG 2 cut(s) 1163, 1305
BseCI ATCGAT 1 cut(s) 1089
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 2 cut(s) 501, 862
BseLI CCNNNNNNNGG 3 cut(s) 126, 251, 1179
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 1272, 1343
BseNI ACTGG 4 cut(s) 79, 174, 579, 1083
BseSI GKGCMC 2 cut(s) 244, 702
BseXI GCAGC 2 cut(s) 73, 1312
BsgI GTGCAG 1 cut(s) 346
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 3 cut(s) 161, 839, 1183
BshNI GGYRCC 1 cut(s) 241
BshVI ATCGAT 1 cut(s) 1089
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 2 cut(s) 82, 702
BsiSI CCGG 2 cut(s) 158, 397
BsiWI CGTACG 1 cut(s) 919
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 3 cut(s) 126, 251, 1179
BsmAI GTCTC 1 cut(s) 587
BsmFI GGGAC 1 cut(s) 631
BsmI GAATGC 1 cut(s) 817
BsnI GGCC 3 cut(s) 161, 839, 1183
Bsp1286I GDGCHC 4 cut(s) 82, 244, 327, 702
Bsp143I GATC 8 cut(s) 97, 275, 379, 512, 658, 772, 1090, 1332
BspACI CCGC 4 cut(s) 35, 571, 880, 990
BspANI GGCC 3 cut(s) 161, 839, 1183
BspCNI CTCAG 2 cut(s) 1271, 1342
BspDI ATCGAT 1 cut(s) 1089
BspLI GGNNCC 2 cut(s) 243, 647
BspMAI CTGCAG 1 cut(s) 1302
BspMI ACCTGC 1 cut(s) 253
BspOI GCTAGC 1 cut(s) 786
BspPI GGATC 4 cut(s) 92, 283, 653, 1085
BspT107I GGYRCC 1 cut(s) 241
BsrDI GCAATG 1 cut(s) 143
BsrI ACTGG 4 cut(s) 79, 174, 579, 1083
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 8 cut(s) 97, 275, 379, 512, 658, 772, 1090, 1332
BssNAI GTATAC 1 cut(s) 568
BssNI GRCGYC 1 cut(s) 951
Bst1107I GTATAC 1 cut(s) 568
Bst2UI CCWGG 2 cut(s) 1163, 1305
Bst4CI ACNGT 3 cut(s) 545, 672, 770
Bst6I CTCTTC 1 cut(s) 992
BstACI GRCGYC 1 cut(s) 951
BstBAI YACGTR 2 cut(s) 904, 919
BstC8I GCNNGC 3 cut(s) 163, 784, 1139
BstDEI CTNAG 3 cut(s) 816, 1258, 1329
BstF5I GGATG 2 cut(s) 501, 862
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 8 cut(s) 100, 278, 382, 515, 661, 775, 1093, 1335
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 8 cut(s) 97, 275, 379, 512, 658, 772, 1090, 1332
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 4 cut(s) 32, 86, 897, 1189
BstNI CCWGG 2 cut(s) 1163, 1305
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 3 cut(s) 395, 1161, 1303
BstSFI CTRYAG 2 cut(s) 955, 1298
BstSLI GKGCMC 2 cut(s) 244, 702
BstSNI TACGTA 2 cut(s) 904, 919
BstV1I GCAGC 2 cut(s) 73, 1312
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 3 cut(s) 512, 658, 1332
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 3 cut(s) 512, 658, 1332
BstZ17I GTATAC 1 cut(s) 568
Bsu15I ATCGAT 1 cut(s) 1089
BsuRI GGCC 3 cut(s) 161, 839, 1183
BsuTUI ATCGAT 1 cut(s) 1089
BtsCI GGATG 2 cut(s) 501, 862
BtsI GCAGTG 1 cut(s) 1148
BtsIMutI CAGTG 3 cut(s) 550, 1148, 1266
BveI ACCTGC 1 cut(s) 253
Cac8I GCNNGC 3 cut(s) 163, 784, 1139
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 645, 1016
ClaI ATCGAT 1 cut(s) 1089
Csp6I GTAC 7 cut(s) 304, 528, 905, 920, 946, 1002, 1293
CviAII CATG 5 cut(s) 29, 83, 679, 1059, 1207
CviQI GTAC 7 cut(s) 304, 528, 905, 920, 946, 1002, 1293
DdeI CTNAG 3 cut(s) 816, 1258, 1329
DpnI GATC 8 cut(s) 99, 277, 381, 514, 660, 774, 1092, 1334
DpnII GATC 8 cut(s) 97, 275, 379, 512, 658, 772, 1090, 1332
EaeI YGGCCR 2 cut(s) 159, 837
Eam1104I CTCTTC 1 cut(s) 992
EarI CTCTTC 1 cut(s) 992
EciI GGCGGA 1 cut(s) 895
Eco105I TACGTA 2 cut(s) 904, 919
Eco147I AGGCCT 1 cut(s) 1183
Eco24I GRGCYC 1 cut(s) 327
Eco47I GGWCC 2 cut(s) 645, 1016
EcoRII CCWGG 2 cut(s) 1161, 1303
EcoT22I ATGCAT 1 cut(s) 1051
EcoT38I GRGCYC 1 cut(s) 327
FaeI CATG 5 cut(s) 32, 86, 682, 1062, 1210
FaqI GGGAC 1 cut(s) 631
FatI CATG 5 cut(s) 28, 82, 678, 1058, 1206
FauNDI CATATG 3 cut(s) 40, 895, 1051
FbaI TGATCA 1 cut(s) 379
FblI GTMKAC 3 cut(s) 521, 567, 954
Fnu4HI GCNGC 3 cut(s) 36, 87, 1301
FokI GGATG 2 cut(s) 508, 869
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 3 cut(s) 36, 87, 1301
FspBI CTAG 4 cut(s) 506, 516, 525, 783
GlaI GCGC 1 cut(s) 27
GluI GCNGC 3 cut(s) 36, 87, 1301
HaeIII GGCC 3 cut(s) 161, 839, 1183
HapII CCGG 2 cut(s) 158, 397
HhaI GCGC 1 cut(s) 28
Hin1I GRCGYC 1 cut(s) 951
Hin1II CATG 5 cut(s) 32, 86, 682, 1062, 1210
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 2 cut(s) 115, 541
HindII GTYRAC 2 cut(s) 115, 541
HinfI GANTC 3 cut(s) 234, 726, 1106
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 2 cut(s) 158, 397
HphI GGTGA 1 cut(s) 758
Hpy188I TCNGA 8 cut(s) 555, 826, 851, 965, 1020, 1219, 1332, 1339
Hpy188III TCNNGA 4 cut(s) 352, 383, 740, 911
Hpy99I CGWCG 2 cut(s) 953, 1178
HpyAV CCTTC 4 cut(s) 111, 365, 704, 860
HpyCH4III ACNGT 3 cut(s) 545, 672, 770
HpyCH4IV ACGT 4 cut(s) 903, 918, 951, 1278
HpyCH4V TGCA 9 cut(s) 212, 248, 363, 700, 979, 1033, 1049, 1141, 1300
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 86, 897, 1189
HpyF3I CTNAG 3 cut(s) 816, 1258, 1329
HpySE526I ACGT 4 cut(s) 903, 918, 951, 1278
Hsp92I GRCGYC 1 cut(s) 951
Hsp92II CATG 5 cut(s) 32, 86, 682, 1062, 1210
HspAI GCGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 379
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 8 cut(s) 97, 275, 379, 512, 658, 772, 1090, 1332
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 2 cut(s) 73, 1312
LweI GCATC 4 cut(s) 257, 538, 1124, 1315
MaeI CTAG 4 cut(s) 506, 516, 525, 783
MaeII ACGT 4 cut(s) 903, 918, 951, 1278
MaeIII GTNAC 6 cut(s) 70, 262, 399, 424, 715, 1095
MalI GATC 8 cut(s) 99, 277, 381, 514, 660, 774, 1092, 1334
MboI GATC 8 cut(s) 97, 275, 379, 512, 658, 772, 1090, 1332
MboII GAAGA 7 cut(s) 44, 496, 728, 1009, 1101, 1104, 1107
MfeI CAATTG 1 cut(s) 207
MflI RGATCY 3 cut(s) 512, 658, 1332
MhlI GDGCHC 4 cut(s) 82, 244, 327, 702
MlsI TGGCCA 1 cut(s) 839
MluCI AATT 7 cut(s) 13, 207, 355, 438, 556, 1267, 1309
MluNI TGGCCA 1 cut(s) 839
MlyI GAGTC 1 cut(s) 720
MmeI TCCRAC 1 cut(s) 1259
MnlI CCTC 8 cut(s) 314, 361, 485, 622, 626, 918, 1046, 1060
Mox20I TGGCCA 1 cut(s) 839
Mph1103I ATGCAT 1 cut(s) 1051
MroXI GAANNNNTTC 1 cut(s) 1312
MscI TGGCCA 1 cut(s) 839
MseI TTAA 4 cut(s) 59, 114, 143, 1320
MslI CAYNNNNRTG 2 cut(s) 195, 1011
Msp20I TGGCCA 1 cut(s) 839
MspI CCGG 2 cut(s) 158, 397
MspR9I CCNGG 3 cut(s) 397, 1163, 1305
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 817
MvaI CCWGG 2 cut(s) 1163, 1305
MwoI GCNNNNNNNGC 4 cut(s) 32, 86, 897, 1189
NciI CCSGG 1 cut(s) 397
NdeI CATATG 3 cut(s) 40, 895, 1051
NdeII GATC 8 cut(s) 97, 275, 379, 512, 658, 772, 1090, 1332
NheI GCTAGC 1 cut(s) 782
NlaIII CATG 5 cut(s) 32, 86, 682, 1062, 1210
NlaIV GGNNCC 2 cut(s) 243, 647
NmuCI GTSAC 2 cut(s) 262, 1095
NsiI ATGCAT 1 cut(s) 1051
NspI RCATGY 1 cut(s) 32
PaqCI CACCTGC 1 cut(s) 253
PceI AGGCCT 1 cut(s) 1183
PctI GAATGC 1 cut(s) 817
PdmI GAANNNNTTC 1 cut(s) 1312
PfeI GAWTC 2 cut(s) 234, 1106
Pfl23II CGTACG 1 cut(s) 919
PfoI TCCNGGA 1 cut(s) 1161
PkrI GCNGC 3 cut(s) 37, 88, 1302
PleI GAGTC 1 cut(s) 720
PpsI GAGTC 1 cut(s) 720
Ppu21I YACGTR 2 cut(s) 904, 919
Psp6I CCWGG 2 cut(s) 1161, 1303
PspGI CCWGG 2 cut(s) 1161, 1303
PspLI CGTACG 1 cut(s) 919
PspN4I GGNNCC 2 cut(s) 243, 647
PspPI GGNCC 2 cut(s) 645, 1016
PstI CTGCAG 1 cut(s) 1302
PsuI RGATCY 3 cut(s) 512, 658, 1332
RsaI GTAC 7 cut(s) 305, 529, 906, 921, 947, 1003, 1294
RsaNI GTAC 7 cut(s) 304, 528, 905, 920, 946, 1002, 1293
RseI CAYNNNNRTG 2 cut(s) 195, 1011
SaqAI TTAA 4 cut(s) 59, 114, 143, 1320
SatI GCNGC 3 cut(s) 36, 87, 1301
Sau3AI GATC 8 cut(s) 97, 275, 379, 512, 658, 772, 1090, 1332
Sau96I GGNCC 2 cut(s) 645, 1016
SchI GAGTC 1 cut(s) 720
ScrFI CCNGG 3 cut(s) 397, 1163, 1305
SduI GDGCHC 4 cut(s) 82, 244, 327, 702
SfaNI GCATC 4 cut(s) 257, 538, 1124, 1315
SfcI CTRYAG 2 cut(s) 955, 1298
SinI GGWCC 2 cut(s) 645, 1016
SmiMI CAYNNNNRTG 2 cut(s) 195, 1011
SmlI CTYRAG 3 cut(s) 607, 720, 1224
SmoI CTYRAG 3 cut(s) 607, 720, 1224
SnaBI TACGTA 2 cut(s) 904, 919
SpeI ACTAGT 1 cut(s) 524
Sse9I AATT 7 cut(s) 13, 207, 355, 438, 556, 1267, 1309
SseBI AGGCCT 1 cut(s) 1183
SsiI CCGC 4 cut(s) 35, 571, 880, 990
SspMI CTAG 4 cut(s) 506, 516, 525, 783
StuI AGGCCT 1 cut(s) 1183
StyD4I CCNGG 3 cut(s) 395, 1161, 1303
TaaI ACNGT 3 cut(s) 545, 672, 770
TaiI ACGT 4 cut(s) 906, 921, 954, 1281
TaqI TCGA 5 cut(s) 104, 310, 708, 864, 1089
TaqII GACCGA 1 cut(s) 421
TasI AATT 7 cut(s) 13, 207, 355, 438, 556, 1267, 1309
TatI WGTACW 2 cut(s) 527, 1001
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 234, 1106
Tru1I TTAA 4 cut(s) 59, 114, 143, 1320
Tru9I TTAA 4 cut(s) 59, 114, 143, 1320
TscAI CASTG 3 cut(s) 550, 1155, 1266
TseFI GTSAC 2 cut(s) 262, 1095
TseI GCWGC 2 cut(s) 86, 1300
Tsp45I GTSAC 2 cut(s) 262, 1095
TspDTI ATGAA 4 cut(s) 667, 824, 873, 956
TspGWI ACGGA 4 cut(s) 333, 380, 1009, 1083
TspRI CASTG 3 cut(s) 550, 1155, 1266
VneI GTGCAC 1 cut(s) 698
VpaK11BI GGWCC 2 cut(s) 645, 1016
XapI RAATTY 2 cut(s) 13, 556
XceI RCATGY 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 1 cut(s) 586
XmiI GTMKAC 3 cut(s) 521, 567, 954
XmnI GAANNNNTTC 1 cut(s) 1312
XspI CTAG 4 cut(s) 506, 516, 525, 783
ZraI GACGTC 1 cut(s) 952
Zsp2I ATGCAT 1 cut(s) 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.