Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

1361310 .. 1362059

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46175

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGATTATCCACAAATATTTACAACATTTCCAAGGAGTCAAAACAATCCACCTGATCCTCCTCTTCATCTTCTTCATTTCTCCTCAGTTTCATTCTTCATATGCACAATCATGGATTAGAGCTGGTTACTGGTATGCCAGTAGTGGGTCTCTTATACCTGACATAAACTCTGCCTTGTTTACTCATCTTATATGTGGTTTTGCCAATGTAAGTTCCTTCAGCCACCAGCTCATCATTCCCTCAGCTGATCAGCAGTACTACTCCAGCTTCACCGACATCGTTAAGCGAAAAAATCCATCAATCATCACACTCCTGTCCATCTGGAATGGACAAGCTTCAATAGCTCAAGGAATATTGGGTGACAAGGCCAACTCATCAGTCTTGTCCTCCATGCTCAATCAGTCTTCTAGCAGGAGGTCCTTCATTGAGTATTCAATCCAAACCGCAAGGCGCTACGACTTTTTGGGTATAGACTTGTTTTGGCTGTGGCCTAACACAAAAGCAGATATGATCAATTTGAGAAAGTTGTTGGATGAATGGAGAGCTGCTGTGGATTCTGAGCCAAGAAACTCAAGTCAGTCGAAATTAATGCTGACAATGGCTGTTAAATATGTGCCTTCTTTCGGATCAATGACTTATCTGATTGAGTCTATGAAGAGGAACTTGGATTTTGCACATGCGGTGGCGTATGACTATCATCTGTCTTTGAAGGAAAATGTTACTGGCCGGTGCTCATGCTGCTCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

249

Amino Acids

28.35

Weight (kDa)

9.13

Isoelectric Point (pI)

50.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	41 - 242	6.7e-29	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	444, 680
AclWI	GGATC	2 cut(s)	49, 634
AcoI	YGGCCR	1 cut(s)	724
AcuI	CTGAAG	1 cut(s)	202
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	144, 623
AgsI	TTSAA	3 cut(s)	339, 435, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	647, 679
AluBI	AGCT	7 cut(s)	122, 229, 245, 267, 335, 344, 545
AluI	AGCT	7 cut(s)	122, 229, 245, 267, 335, 344, 545
Alw21I	GWGCWC	1 cut(s)	734
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	2 cut(s)	49, 634
AoxI	GGCC	3 cut(s)	366, 488, 724
ApeKI	GCWGC	2 cut(s)	545, 738
AseI	ATTAAT	1 cut(s)	587
AspLEI	GCGC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	417
AsuHPI	GGTGA	2 cut(s)	262, 371
AvaII	GGWCC	1 cut(s)	417
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	734
BbvCI	CCTCAGC	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	532, 725
BccI	CCATC	2 cut(s)	304, 326
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BclI	TGATCA	2 cut(s)	247, 510
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	408
BfoI	RGCGCY	1 cut(s)	454
BisI	GCNGC	2 cut(s)	546, 739
BlsI	GCNGC	2 cut(s)	547, 740
BmcAI	AGTACT	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	247
Bpu10I	CCTNAGC	1 cut(s)	241
BpuEI	CTTGAG	2 cut(s)	330, 556
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 623
Bse118I	RCCGGY	1 cut(s)	726
Bse1I	ACTGG	3 cut(s)	134, 138, 727
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	2 cut(s)	144, 623
BseMII	CTCAG	3 cut(s)	98, 255, 549
BseNI	ACTGG	3 cut(s)	134, 138, 727
BseRI	GAGGAG	2 cut(s)	50, 72
BseXI	GCAGC	2 cut(s)	532, 725
BshFI	GGCC	3 cut(s)	368, 490, 726
BsiHKAI	GWGCWC	1 cut(s)	734
BsiSI	CCGG	1 cut(s)	727
BslI	CCNNNNNNNGG	2 cut(s)	144, 623
BsmAI	GTCTC	1 cut(s)	153
BsnI	GGCC	3 cut(s)	368, 490, 726
Bso31I	GGTCTC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	734
Bsp143I	GATC	4 cut(s)	54, 247, 510, 626
BspACI	CCGC	2 cut(s)	444, 680
BspANI	GGCC	3 cut(s)	368, 490, 726
BspCNI	CTCAG	3 cut(s)	97, 254, 550
BspPI	GGATC	2 cut(s)	49, 634
BspTNI	GGTCTC	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	726
BsrI	ACTGG	3 cut(s)	134, 138, 727
BssAI	RCCGGY	1 cut(s)	726
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	4 cut(s)	54, 247, 510, 626
BssT1I	CCWWGG	1 cut(s)	31
Bst6I	CTCTTC	2 cut(s)	68, 650
BstDEI	CTNAG	3 cut(s)	84, 241, 558
BstF5I	GGATG	1 cut(s)	538
BstH2I	RGCGCY	1 cut(s)	454
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	4 cut(s)	57, 250, 513, 629
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	4 cut(s)	54, 247, 510, 626
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 738
BstNSI	RCATGY	1 cut(s)	680
BstV1I	GCAGC	2 cut(s)	532, 725
BstV2I	GAAGAC	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	368, 490, 726
BtsCI	GGATG	1 cut(s)	538
CfoI	GCGC	1 cut(s)	453
Cfr10I	RCCGGY	1 cut(s)	726
Cfr13I	GGNCC	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	4 cut(s)	111, 391, 677, 735
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	3 cut(s)	84, 241, 558
DpnI	GATC	4 cut(s)	56, 249, 512, 628
DpnII	GATC	4 cut(s)	54, 247, 510, 626
EaeI	YGGCCR	1 cut(s)	724
Eam1104I	CTCTTC	2 cut(s)	68, 650
EarI	CTCTTC	2 cut(s)	68, 650
Eco130I	CCWWGG	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	4 cut(s)	114, 394, 680, 738
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FatI	CATG	4 cut(s)	110, 390, 676, 734
FauNDI	CATATG	1 cut(s)	100
FbaI	TGATCA	2 cut(s)	247, 510
Fnu4HI	GCNGC	2 cut(s)	546, 739
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	2 cut(s)	546, 739
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	2 cut(s)	546, 739
GsuI	CTGGAG	1 cut(s)	247
HaeII	RGCGCY	1 cut(s)	454
HaeIII	GGCC	3 cut(s)	368, 490, 726
HapII	CCGG	1 cut(s)	727
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	4 cut(s)	114, 394, 680, 738
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	3 cut(s)	36, 554, 647
HpaII	CCGG	1 cut(s)	727
HphI	GGTGA	2 cut(s)	262, 371
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188I	TCNGA	3 cut(s)	559, 626, 642
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	1 cut(s)	180
HpyAV	CCTTC	4 cut(s)	226, 430, 627, 703
HpyCH4V	TGCA	2 cut(s)	104, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 738
HpyF3I	CTNAG	3 cut(s)	84, 241, 558
Hsp92II	CATG	4 cut(s)	114, 394, 680, 738
HspAI	GCGC	1 cut(s)	451
Ksp22I	TGATCA	2 cut(s)	247, 510
Kzo9I	GATC	4 cut(s)	54, 247, 510, 626
Lsp1109I	GCAGC	2 cut(s)	532, 725
MaeI	CTAG	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	125, 359, 718
MalI	GATC	4 cut(s)	56, 249, 512, 628
MboI	GATC	4 cut(s)	54, 247, 510, 626
MboII	GAAGA	6 cut(s)	55, 61, 64, 87, 396, 667
MhlI	GDGCHC	1 cut(s)	734
MluCI	AATT	2 cut(s)	514, 584
MlyI	GAGTC	2 cut(s)	45, 656
MmeI	TCCRAC	1 cut(s)	510
MnlI	CCTC	7 cut(s)	68, 71, 93, 250, 397, 408, 651
MseI	TTAA	3 cut(s)	282, 587, 606
MslI	CAYNNNNRTG	1 cut(s)	109
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	727
MwoI	GCNNNNNNNGC	2 cut(s)	341, 738
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	4 cut(s)	54, 247, 510, 626
NlaIII	CATG	4 cut(s)	114, 394, 680, 738
NmuCI	GTSAC	1 cut(s)	359
NspI	RCATGY	1 cut(s)	680
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	2 cut(s)	547, 740
PleI	GAGTC	2 cut(s)	44, 655
PpsI	GAGTC	2 cut(s)	44, 655
PpuMI	RGGWCCY	1 cut(s)	417
PshBI	ATTAAT	1 cut(s)	587
Psp5II	RGGWCCY	1 cut(s)	417
PspPI	GGNCC	1 cut(s)	417
PspPPI	RGGWCCY	1 cut(s)	417
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	109
SaqAI	TTAA	3 cut(s)	282, 587, 606
SatI	GCNGC	2 cut(s)	546, 739
Sau3AI	GATC	4 cut(s)	54, 247, 510, 626
Sau96I	GGNCC	1 cut(s)	417
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	2 cut(s)	45, 656
SduI	GDGCHC	1 cut(s)	734
SinI	GGWCC	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	109
SmlI	CTYRAG	2 cut(s)	345, 571
SmoI	CTYRAG	2 cut(s)	345, 571
Sse9I	AATT	2 cut(s)	514, 584
SsiI	CCGC	2 cut(s)	444, 680
SspI	AATATT	2 cut(s)	17, 354
SspMI	CTAG	1 cut(s)	408
StyI	CCWWGG	1 cut(s)	31
TaqI	TCGA	1 cut(s)	581
TasI	AATT	2 cut(s)	514, 584
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	3 cut(s)	282, 587, 606
Tru9I	TTAA	3 cut(s)	282, 587, 606
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	2 cut(s)	545, 738
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	7 cut(s)	55, 64, 80, 87, 412, 549, 668
VpaK11BI	GGWCC	1 cut(s)	417
VspI	ATTAAT	1 cut(s)	587
XceI	RCATGY	1 cut(s)	680
XspI	CTAG	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.