Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

588890 .. 590201

Gene Structure 1312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g01020.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAGCTATAAGTACATCAAGTGGTACGCACGAAGCTACCGAGCTCCCATAGTGTATAATGCTACTTATGTCGTTAATTACTGCGTCATAGGATCGAGTTGGGTTGGTTTCGATGATGTGGAAGCTATCAGAGCTAAGATTGCTTATGCCAAGGAGAAGAAGTTACTCGGTACCATTGTGTTTCAAGTCAACAATGACGATGAAAATTGGGCACTTTCTCGGGCAGCTCAAGAGGAAGGAAATGGTCATGAAAACAAGCGGCGATTATTGCTTATAATTTTGCTTCCAATTACTTTGATCGTAATTCTTATAGCCTTTGTGGTCTGTTACTTGCAGAGAAAACCATTGAAGACAAGAGGGACAATGATTCTAGGCAATTCAAGAGTATCAGATCCTCCAAATCTGCAAGTGTTCAGCTTTTCCAAGATCAAAGCAGCAACAAATAAATTTTCAAGCGAAAACAAGCTTGGAGAGGGTGGGTTTGGTCCCGTATACAAGGGTATACTGCGGACAGGACAAGAAATAGCGGTGAAAAGACTTTCGAAAACATCAACTCAAGGACTAGAGGAATTTGGAAACGAGGTTACACTTACTGCGAGACTACAACATGTGAATCTAGTTCGGGTTCTTGGATTCTGCAGTGAGAAGGAAGAAAAAATGCTGATCTACGAGTACATGCCAAACAAAAGCTTGGACTTCTACCTTTTCGATCCTACCAGACGGTATCTCCTAGACTGGAGAAAGCGTGTGCACATCATCGAAGGCGTTACTCAAGGACTACTATATCTTCAAGAATACTCGAACTTTACAATCATTCACCGAGATCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

277

Amino Acids

31.81

Weight (kDa)

9.5

Isoelectric Point (pI)

44.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	275
Acc65I	GGTACC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	170
AccI	GTMKAC	2 cut(s)	492, 502
AciI	CCGC	3 cut(s)	259, 508, 527
AclWI	GGATC	3 cut(s)	100, 386, 704
AcsI	RAATTY	2 cut(s)	446, 569
AfaI	GTAC	4 cut(s)	14, 26, 172, 674
AflIII	ACRYGT	1 cut(s)	607
AgsI	TTSAA	5 cut(s)	185, 349, 381, 453, 791
AjuI	GAANNNNNNNTTGG	2 cut(s)	450, 482
AluBI	AGCT	9 cut(s)	6, 36, 44, 125, 134, 227, 417, 466, 690
AluI	AGCT	9 cut(s)	6, 36, 44, 125, 134, 227, 417, 466, 690
Alw21I	GWGCWC	2 cut(s)	46, 753
Alw26I	GTCTC	1 cut(s)	592
Alw44I	GTGCAC	1 cut(s)	749
AlwI	GGATC	3 cut(s)	100, 386, 704
Ama87I	CYCGRG	1 cut(s)	219
ApaLI	GTGCAC	1 cut(s)	749
ApeKI	GCWGC	2 cut(s)	224, 434
ApoI	RAATTY	2 cut(s)	446, 569
Asp718I	GGTACC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	2 cut(s)	541, 809
AsuII	TTCGAA	1 cut(s)	542
AvaI	CYCGRG	1 cut(s)	219
AvaII	GGWCC	1 cut(s)	485
BaeGI	GKGCMC	2 cut(s)	214, 753
BaeI	ACNNNNGTAYC	2 cut(s)	162, 195
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	2 cut(s)	46, 753
BbvI	GCAGC	2 cut(s)	236, 446
BcoDI	GTCTC	1 cut(s)	592
BfaI	CTAG	4 cut(s)	371, 563, 617, 731
BfmI	CTRYAG	1 cut(s)	637
BisI	GCNGC	3 cut(s)	225, 260, 435
BlsI	GCNGC	3 cut(s)	226, 261, 436
Bme18I	GGWCC	1 cut(s)	485
BmeT110I	CYCGRG	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	172, 487
BpiI	GAAGAC	1 cut(s)	356
BpmI	CTGGAG	1 cut(s)	757
Bpu14I	TTCGAA	1 cut(s)	542
BpuEI	CTTGAG	3 cut(s)	213, 540, 756
Bsa29I	ATCGAT	1 cut(s)	826
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	6 cut(s)	146, 176, 711, 730, 741, 760
Bse1I	ACTGG	1 cut(s)	740
BseCI	ATCGAT	1 cut(s)	826
BseDI	CCNNGG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	740
BseSI	GKGCMC	2 cut(s)	214, 753
BseXI	GCAGC	2 cut(s)	236, 446
BshNI	GGYRCC	1 cut(s)	170
BshVI	ATCGAT	1 cut(s)	826
BsiHKAI	GWGCWC	2 cut(s)	46, 753
BsiHKCI	CYCGRG	1 cut(s)	219
BslFI	GGGAC	2 cut(s)	373, 471
BsmAI	GTCTC	1 cut(s)	592
BsmFI	GGGAC	2 cut(s)	373, 471
BsoBI	CYCGRG	1 cut(s)	219
Bsp119I	TTCGAA	1 cut(s)	542
Bsp1286I	GDGCHC	3 cut(s)	46, 214, 753
Bsp143I	GATC	7 cut(s)	92, 297, 391, 426, 663, 709, 823
BspACI	CCGC	3 cut(s)	259, 508, 527
BspDI	ATCGAT	1 cut(s)	826
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	2 cut(s)	172, 487
BspMAI	CTGCAG	1 cut(s)	641
BspPI	GGATC	3 cut(s)	100, 386, 704
BspT104I	TTCGAA	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	740
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	7 cut(s)	92, 297, 391, 426, 663, 709, 823
BssNAI	GTATAC	2 cut(s)	493, 503
BssT1I	CCWWGG	1 cut(s)	150
Bst1107I	GTATAC	2 cut(s)	493, 503
Bst4CI	ACNGT	1 cut(s)	723
BstBI	TTCGAA	1 cut(s)	542
BstDEI	CTNAG	1 cut(s)	135
BstKTI	GATC	7 cut(s)	95, 300, 394, 429, 666, 712, 826
BstMAI	GTCTC	1 cut(s)	592
BstMBI	GATC	7 cut(s)	92, 297, 391, 426, 663, 709, 823
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 140, 268
BstNSI	RCATGY	2 cut(s)	611, 679
BstSFI	CTRYAG	1 cut(s)	637
BstSLI	GKGCMC	2 cut(s)	214, 753
BstV1I	GCAGC	2 cut(s)	236, 446
BstV2I	GAAGAC	1 cut(s)	356
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BstZ17I	GTATAC	2 cut(s)	493, 503
Bsu15I	ATCGAT	1 cut(s)	826
BsuTUI	ATCGAT	1 cut(s)	826
BtsI	GCAGTG	1 cut(s)	646
BtsIMutI	CAGTG	1 cut(s)	646
CciI	TCATGA	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	485
ClaI	ATCGAT	1 cut(s)	826
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	4 cut(s)	13, 25, 171, 673
CviAII	CATG	3 cut(s)	248, 608, 676
CviQI	GTAC	4 cut(s)	13, 25, 171, 673
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	7 cut(s)	94, 299, 393, 428, 665, 711, 825
DpnII	GATC	7 cut(s)	92, 297, 391, 426, 663, 709, 823
Ecl136II	GAGCTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	485
Eco53kI	GAGCTC	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	251, 611, 679
FaqI	GGGAC	2 cut(s)	373, 471
FatI	CATG	3 cut(s)	247, 607, 675
FblI	GTMKAC	2 cut(s)	492, 502
Fnu4HI	GCNGC	3 cut(s)	225, 260, 435
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	225, 260, 435
FspBI	CTAG	4 cut(s)	371, 563, 617, 731
GluI	GCNGC	3 cut(s)	225, 260, 435
GsuI	CTGGAG	1 cut(s)	757
HgaI	GACGC	1 cut(s)	73
Hin1II	CATG	3 cut(s)	251, 611, 679
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	2 cut(s)	464, 688
HinfI	GANTC	3 cut(s)	367, 613, 633
HphI	GGTGA	2 cut(s)	541, 809
Hpy166II	GTNNAC	4 cut(s)	190, 493, 503, 751
Hpy188I	TCNGA	2 cut(s)	131, 391
Hpy188III	TCNNGA	4 cut(s)	230, 248, 381, 791
Hpy8I	GTNNAC	4 cut(s)	190, 493, 503, 751
HpyAV	CCTTC	3 cut(s)	230, 640, 755
HpyCH4III	ACNGT	1 cut(s)	723
HpyCH4V	TGCA	4 cut(s)	334, 406, 639, 751
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 140, 268
HpyF3I	CTNAG	1 cut(s)	135
Hsp92II	CATG	3 cut(s)	251, 611, 679
KpnI	GGTACC	1 cut(s)	174
Kzo9I	GATC	7 cut(s)	92, 297, 391, 426, 663, 709, 823
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	3 cut(s)	498, 721, 730
Lsp1109I	GCAGC	2 cut(s)	236, 446
MaeI	CTAG	4 cut(s)	371, 563, 617, 731
MaeIII	GTNAC	4 cut(s)	162, 326, 583, 766
MalI	GATC	7 cut(s)	94, 299, 393, 428, 665, 711, 825
MboI	GATC	7 cut(s)	92, 297, 391, 426, 663, 709, 823
MboII	GAAGA	4 cut(s)	169, 361, 662, 779
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	3 cut(s)	46, 214, 753
MluCI	AATT	8 cut(s)	76, 205, 276, 288, 303, 376, 446, 569
MnlI	CCTC	6 cut(s)	226, 350, 405, 466, 559, 574
MseI	TTAA	1 cut(s)	75
MwoI	GCNNNNNNNGC	3 cut(s)	131, 140, 268
NdeII	GATC	7 cut(s)	92, 297, 391, 426, 663, 709, 823
NlaIII	CATG	3 cut(s)	251, 611, 679
NlaIV	GGNNCC	2 cut(s)	172, 487
NspI	RCATGY	2 cut(s)	611, 679
NspV	TTCGAA	1 cut(s)	542
PagI	TCATGA	1 cut(s)	247
PciI	ACATGT	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PfeI	GAWTC	3 cut(s)	367, 613, 633
PkrI	GCNGC	3 cut(s)	226, 261, 436
PscI	ACATGT	1 cut(s)	607
PsiI	TTATAA	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	172, 487
PspPI	GGNCC	1 cut(s)	485
PstI	CTGCAG	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	4 cut(s)	14, 26, 172, 674
RsaNI	GTAC	4 cut(s)	13, 25, 171, 673
SacI	GAGCTC	1 cut(s)	46
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	3 cut(s)	225, 260, 435
Sau3AI	GATC	7 cut(s)	92, 297, 391, 426, 663, 709, 823
Sau96I	GGNCC	1 cut(s)	485
SduI	GDGCHC	3 cut(s)	46, 214, 753
SfcI	CTRYAG	1 cut(s)	637
SfuI	TTCGAA	1 cut(s)	542
SinI	GGWCC	1 cut(s)	485
SmlI	CTYRAG	3 cut(s)	228, 555, 771
SmoI	CTYRAG	3 cut(s)	228, 555, 771
Sse9I	AATT	8 cut(s)	76, 205, 276, 288, 303, 376, 446, 569
SsiI	CCGC	3 cut(s)	259, 508, 527
SspMI	CTAG	4 cut(s)	371, 563, 617, 731
SstI	GAGCTC	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	723
TaqI	TCGA	7 cut(s)	95, 111, 542, 708, 759, 800, 826
TasI	AATT	8 cut(s)	76, 205, 276, 288, 303, 376, 446, 569
TatI	WGTACW	2 cut(s)	12, 672
TauI	GCSGC	1 cut(s)	262
TfiI	GAWTC	3 cut(s)	367, 613, 633
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	646
TseI	GCWGC	2 cut(s)	224, 434
TspDTI	ATGAA	2 cut(s)	216, 264
TspRI	CASTG	1 cut(s)	646
VneI	GTGCAC	1 cut(s)	749
VpaK11BI	GGWCC	1 cut(s)	485
XapI	RAATTY	2 cut(s)	446, 569
XceI	RCATGY	2 cut(s)	611, 679
XmiI	GTMKAC	2 cut(s)	492, 502
XspI	CTAG	4 cut(s)	371, 563, 617, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.