Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8497771.1

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2391

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8497771.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1622 bp

atggagtcaaaaacaatccacctgaacctcctcttcatcttgttcatttctcctcagtttcattcttcatatgcacaaacatggattaaagctggttactggtatgccagtggtgagtctcctattcctgacataaactctgccttgtttactcatcttatttgtggttttgccaatgtaagttcctccagctaccagctcatcattccctcagctgatcagcagtactactccagcttcaccgaaatcgttaagcgaaaaaacccatcaatcatcacactcctgtccatctggaatggacaagcttcaacagctcaaggaatattgggtgaaaaggtcaactcatcagtcttgtcctccatgctcaatcaatcttctagcagaagttctttcattgaatcttcaatccaaaccgcaaggcgctatggcttttggggtatagacttgttttggctgtggcctaacacagaagcagatatgatcaacttgggaaagctgttggatgaatggagagctgctgtggattctgagccaagaaactcaagtctgtcgaaattaatgctgacaatggctgttaaatatgtgccttctttcggatcaatgacttatccgattgagtctatgaagaagaacttggattttgcacatgtggtggcatatgactatcatctgccttcgaaggaaaatgttactggtgctcatgctgctctgtataacccaacaagtcatgttaatacagactatggtataaggcagtggctaaacaattcatttcctgctagcaaactggttatgggattgccttaccatggctatgcgtggactcttgcgaacccgaatgacaatggaattggagcgcctgcagctggtgtagctgtgacacaagatggttccatgagctataagtacatcaagtggtatactcgaagctacgaagctaaaataatgtataatgctagttatgttgtgaattactgcatcattggattgaactggattggatttgatgatgttgaagctatcagagctaagattgcatatgccaaggaaaagaagctacttggttacaatgtgtttgtagtcaccaatgatgacaactgggcgctttcttgggcagctcaggatgaagaaaatgctcacggaaagaagaggcagttattgcttataattttccttccaattactatgatcatcatcctcatagcctctgtggtgtgttacctgcaaagaaaattgttgaagacaaaagggaagataattctgcgcaagttatgtcgatcagaatcagcttttactagtggttctccaagtctgcaagaattcagcttctccactatcaaagctgctacaaataccttctcaagtgaaaacttgcttggagagggtgggtttggtcctgtttacaagggaaaattgcgaaatggacaggaaatagctgtgaaacgtctttcaaaaacatcaactcaaggacttgaggaattcagaaatgaagttacactcactgcaagactagaacatgtaaatctagttcgcgttcttgggttttgcagtaagaaggaagagaaaatgctgatctacgaatacatgcctaacaaaagcttggacttctacctttttggtat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

540

Amino Acids

60.7

Weight (kDa)

8.98

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1166
Acc16I	TGCGCA	1 cut(s)	1265
Acc36I	ACCTGC	1 cut(s)	1230
AccI	GTMKAC	1 cut(s)	920
AccII	CGCG	1 cut(s)	1533
AciI	CCGC	1 cut(s)	414
AclWI	GGATC	1 cut(s)	604
AcsI	RAATTY	2 cut(s)	1319, 1478
AfaI	GTAC	2 cut(s)	227, 908
AfiI	CCNNNNNNNGG	3 cut(s)	593, 809, 866
AflIII	ACRYGT	2 cut(s)	646, 1516
AgsI	TTSAA	7 cut(s)	309, 398, 405, 991, 1016, 1240, 1452
AhlI	ACTAGT	1 cut(s)	1295
AjuI	GAANNNNNNNTTGG	4 cut(s)	617, 649, 1359, 1391
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	604
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	5 cut(s)	515, 704, 863, 1115, 1343
ApoI	RAATTY	2 cut(s)	1319, 1478
AseI	ATTAAT	1 cut(s)	557
AspLEI	GCGC	4 cut(s)	423, 859, 1105, 1266
AspS9I	GGNCC	1 cut(s)	1394
AsuHPI	GGTGA	4 cut(s)	125, 232, 341, 1075
AsuII	TTCGAA	1 cut(s)	677
AsuNHI	GCTAGC	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	1394
BbsI	GAAGAC	1 cut(s)	1247
Bbv12I	GWGCWC	1 cut(s)	700
BbvCI	CCTCAGC	1 cut(s)	211
BbvI	GCAGC	5 cut(s)	502, 691, 875, 1127, 1330
BccI	CCATC	3 cut(s)	274, 296, 881
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BclI	TGATCA	3 cut(s)	217, 480, 1188
BcoDI	GTCTC	1 cut(s)	123
BcuI	ACTAGT	1 cut(s)	1295
BfaI	CTAG	6 cut(s)	378, 780, 957, 1296, 1511, 1526
BfmI	CTRYAG	1 cut(s)	861
BfoI	RGCGCY	3 cut(s)	424, 860, 1106
BfuAI	ACCTGC	1 cut(s)	1230
BisI	GCNGC	5 cut(s)	516, 705, 864, 1116, 1344
BlsI	GCNGC	5 cut(s)	517, 706, 865, 1117, 1345
BmcAI	AGTACT	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	1394
BmgT120I	GGNCC	1 cut(s)	1394
BmiI	GGNNCC	1 cut(s)	892
BmrI	ACTGGG	1 cut(s)	1108
BmsI	GCATC	1 cut(s)	987
BmtI	GCTAGC	1 cut(s)	783
BmuI	ACTGGG	1 cut(s)	1108
BpiI	GAAGAC	1 cut(s)	1247
BpmI	CTGGAG	2 cut(s)	172, 217
Bpu10I	CCTNAGC	2 cut(s)	211, 1119
Bpu14I	TTCGAA	1 cut(s)	677
BpuEI	CTTGAG	5 cut(s)	300, 526, 1345, 1449, 1493
BsaBI	GATNNNNATC	2 cut(s)	1193, 1282
BsaJI	CCNNGG	2 cut(s)	808, 1044
Bsc4I	CCNNNNNNNGG	3 cut(s)	593, 809, 866
Bse1I	ACTGG	6 cut(s)	104, 108, 697, 792, 998, 1103
Bse8I	GATNNNNATC	2 cut(s)	1193, 1282
BseDI	CCNNGG	2 cut(s)	808, 1044
BseGI	GGATG	3 cut(s)	508, 1129, 1194
BseJI	GATNNNNATC	2 cut(s)	1193, 1282
BseLI	CCNNNNNNNGG	3 cut(s)	593, 809, 866
BseMII	CTCAG	4 cut(s)	68, 225, 519, 1133
BseNI	ACTGG	6 cut(s)	104, 108, 697, 792, 998, 1103
BseRI	GAGGAG	2 cut(s)	20, 42
BseXI	GCAGC	5 cut(s)	502, 691, 875, 1127, 1330
Bsh1236I	CGCG	1 cut(s)	1533
BshFI	GGCC	1 cut(s)	460
BsiHKAI	GWGCWC	1 cut(s)	700
BslI	CCNNNNNNNGG	3 cut(s)	593, 809, 866
BsmAI	GTCTC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	460
Bsp119I	TTCGAA	1 cut(s)	677
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	6 cut(s)	217, 480, 596, 1188, 1277, 1572
Bsp19I	CCATGG	1 cut(s)	808
BspACI	CCGC	1 cut(s)	414
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	4 cut(s)	67, 224, 520, 1132
BspFNI	CGCG	1 cut(s)	1533
BspLI	GGNNCC	1 cut(s)	892
BspMAI	CTGCAG	1 cut(s)	865
BspMI	ACCTGC	1 cut(s)	1230
BspOI	GCTAGC	1 cut(s)	783
BspPI	GGATC	1 cut(s)	604
BspT104I	TTCGAA	1 cut(s)	677
BsrI	ACTGG	6 cut(s)	104, 108, 697, 792, 998, 1103
BssECI	CCNNGG	2 cut(s)	808, 1044
BssMI	GATC	6 cut(s)	217, 480, 596, 1188, 1277, 1572
BssNAI	GTATAC	1 cut(s)	921
BssT1I	CCWWGG	2 cut(s)	808, 1044
Bst1107I	GTATAC	1 cut(s)	921
Bst6I	CTCTTC	3 cut(s)	38, 1142, 1554
BstAPI	GCANNNNNTGC	1 cut(s)	1159
BstBI	TTCGAA	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	781, 861
BstDEI	CTNAG	5 cut(s)	54, 211, 528, 1029, 1119
BstDSI	CCRYGG	1 cut(s)	808
BstF5I	GGATG	3 cut(s)	508, 1129, 1194
BstFNI	CGCG	1 cut(s)	1533
BstH2I	RGCGCY	3 cut(s)	424, 860, 1106
BstHHI	GCGC	4 cut(s)	423, 859, 1105, 1266
BstKTI	GATC	6 cut(s)	220, 483, 599, 1191, 1280, 1575
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	6 cut(s)	217, 480, 596, 1188, 1277, 1572
BstMWI	GCNNNNNNNGC	7 cut(s)	311, 704, 863, 872, 1025, 1034, 1159
BstNSI	RCATGY	3 cut(s)	650, 1520, 1588
BstSFI	CTRYAG	1 cut(s)	861
BstUI	CGCG	1 cut(s)	1533
BstV1I	GCAGC	5 cut(s)	502, 691, 875, 1127, 1330
BstV2I	GAAGAC	1 cut(s)	1247
BstZ17I	GTATAC	1 cut(s)	921
BsuRI	GGCC	1 cut(s)	460
BtgI	CCRYGG	1 cut(s)	808
BtsCI	GGATG	3 cut(s)	508, 1129, 1194
BtsI	GCAGTG	2 cut(s)	761, 1500
BtsIMutI	CAGTG	3 cut(s)	115, 761, 1500
BveI	ACCTGC	1 cut(s)	1230
Cac8I	GCNNGC	2 cut(s)	781, 861
CfoI	GCGC	4 cut(s)	423, 859, 1105, 1266
Cfr13I	GGNCC	1 cut(s)	1394
Csp6I	GTAC	2 cut(s)	226, 907
CviAII	CATG	9 cut(s)	81, 361, 647, 701, 728, 809, 895, 1517, 1585
CviQI	GTAC	2 cut(s)	226, 907
DdeI	CTNAG	5 cut(s)	54, 211, 528, 1029, 1119
DpnI	GATC	6 cut(s)	219, 482, 598, 1190, 1279, 1574
DpnII	GATC	6 cut(s)	217, 480, 596, 1188, 1277, 1572
Eam1104I	CTCTTC	3 cut(s)	38, 1142, 1554
EarI	CTCTTC	3 cut(s)	38, 1142, 1554
Eco130I	CCWWGG	2 cut(s)	808, 1044
Eco47I	GGWCC	1 cut(s)	1394
EcoRI	GAATTC	2 cut(s)	1319, 1478
EcoT14I	CCWWGG	2 cut(s)	808, 1044
ErhI	CCWWGG	2 cut(s)	808, 1044
FaeI	CATG	9 cut(s)	84, 364, 650, 704, 731, 812, 898, 1520, 1588
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FatI	CATG	9 cut(s)	80, 360, 646, 700, 727, 808, 894, 1516, 1584
FauNDI	CATATG	3 cut(s)	70, 658, 1039
FbaI	TGATCA	3 cut(s)	217, 480, 1188
FblI	GTMKAC	1 cut(s)	920
Fnu4HI	GCNGC	5 cut(s)	516, 705, 864, 1116, 1344
FokI	GGATG	3 cut(s)	515, 1136, 1181
Fsp4HI	GCNGC	5 cut(s)	516, 705, 864, 1116, 1344
FspBI	CTAG	6 cut(s)	378, 780, 957, 1296, 1511, 1526
FspI	TGCGCA	1 cut(s)	1265
GlaI	GCGC	4 cut(s)	422, 858, 1104, 1265
GluI	GCNGC	5 cut(s)	516, 705, 864, 1116, 1344
GsuI	CTGGAG	2 cut(s)	172, 217
HaeII	RGCGCY	3 cut(s)	424, 860, 1106
HaeIII	GGCC	1 cut(s)	460
HhaI	GCGC	4 cut(s)	423, 859, 1105, 1266
Hin1II	CATG	9 cut(s)	84, 364, 650, 704, 731, 812, 898, 1520, 1588
Hin6I	GCGC	4 cut(s)	421, 857, 1103, 1264
HinP1I	GCGC	4 cut(s)	421, 857, 1103, 1264
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	2 cut(s)	303, 1597
HinfI	GANTC	7 cut(s)	5, 116, 398, 524, 617, 823, 1283
HphI	GGTGA	4 cut(s)	125, 232, 341, 1075
Hpy166II	GTNNAC	5 cut(s)	150, 340, 822, 921, 1402
Hpy188I	TCNGA	6 cut(s)	529, 596, 612, 1025, 1282, 1484
Hpy188III	TCNNGA	3 cut(s)	128, 292, 1121
Hpy8I	GTNNAC	5 cut(s)	150, 340, 822, 921, 1402
HpyAV	CCTTC	6 cut(s)	597, 673, 684, 1184, 1366, 1549
HpyCH4IV	ACGT	1 cut(s)	1444
HpyCH4V	TGCA	9 cut(s)	74, 644, 863, 978, 1037, 1225, 1315, 1505, 1548
HpyF10VI	GCNNNNNNNGC	7 cut(s)	311, 704, 863, 872, 1025, 1034, 1159
HpyF3I	CTNAG	5 cut(s)	54, 211, 528, 1029, 1119
HpySE526I	ACGT	1 cut(s)	1444
Hsp92II	CATG	9 cut(s)	84, 364, 650, 704, 731, 812, 898, 1520, 1588
HspAI	GCGC	4 cut(s)	421, 857, 1103, 1264
Ksp22I	TGATCA	3 cut(s)	217, 480, 1188
Kzo9I	GATC	6 cut(s)	217, 480, 596, 1188, 1277, 1572
LmnI	GCTCC	1 cut(s)	854
Lsp1109I	GCAGC	5 cut(s)	502, 691, 875, 1127, 1330
LweI	GCATC	1 cut(s)	987
MaeI	CTAG	6 cut(s)	378, 780, 957, 1296, 1511, 1526
MaeII	ACGT	1 cut(s)	1444
MaeIII	GTNAC	7 cut(s)	95, 688, 877, 1064, 1081, 1217, 1492
MalI	GATC	6 cut(s)	219, 482, 598, 1190, 1279, 1574
MboI	GATC	6 cut(s)	217, 480, 596, 1188, 1277, 1572
MhlI	GDGCHC	1 cut(s)	700
MlyI	GAGTC	4 cut(s)	14, 125, 626, 817
MmeI	TCCRAC	1 cut(s)	480
MseI	TTAA	5 cut(s)	87, 252, 557, 576, 732
MslI	CAYNNNNRTG	2 cut(s)	79, 813
MspA1I	CMGCKG	2 cut(s)	215, 866
MvnI	CGCG	1 cut(s)	1533
MwoI	GCNNNNNNNGC	7 cut(s)	311, 704, 863, 872, 1025, 1034, 1159
NcoI	CCATGG	1 cut(s)	808
NdeI	CATATG	3 cut(s)	70, 658, 1039
NdeII	GATC	6 cut(s)	217, 480, 596, 1188, 1277, 1572
NheI	GCTAGC	1 cut(s)	779
NlaIII	CATG	9 cut(s)	84, 364, 650, 704, 731, 812, 898, 1520, 1588
NlaIV	GGNNCC	1 cut(s)	892
NmuCI	GTSAC	2 cut(s)	877, 1081
NsbI	TGCGCA	1 cut(s)	1265
NspI	RCATGY	3 cut(s)	650, 1520, 1588
NspV	TTCGAA	1 cut(s)	677
PciI	ACATGT	2 cut(s)	646, 1516
PfeI	GAWTC	3 cut(s)	398, 524, 1283
PkrI	GCNGC	5 cut(s)	517, 706, 865, 1117, 1345
PleI	GAGTC	4 cut(s)	13, 124, 625, 817
PpsI	GAGTC	4 cut(s)	13, 124, 625, 817
PscI	ACATGT	2 cut(s)	646, 1516
PshBI	ATTAAT	1 cut(s)	557
PsiI	TTATAA	1 cut(s)	1166
PspN4I	GGNNCC	1 cut(s)	892
PspPI	GGNCC	1 cut(s)	1394
PsrI	GAACNNNNNNTAC	2 cut(s)	1512, 1544
PstI	CTGCAG	1 cut(s)	865
PvuII	CAGCTG	2 cut(s)	215, 866
RsaI	GTAC	2 cut(s)	227, 908
RsaNI	GTAC	2 cut(s)	226, 907
RseI	CAYNNNNRTG	2 cut(s)	79, 813
SaqAI	TTAA	5 cut(s)	87, 252, 557, 576, 732
SatI	GCNGC	5 cut(s)	516, 705, 864, 1116, 1344
Sau3AI	GATC	6 cut(s)	217, 480, 596, 1188, 1277, 1572
Sau96I	GGNCC	1 cut(s)	1394
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	4 cut(s)	14, 125, 626, 817
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	1 cut(s)	987
SfcI	CTRYAG	1 cut(s)	861
SfuI	TTCGAA	1 cut(s)	677
SinI	GGWCC	1 cut(s)	1394
SmiMI	CAYNNNNRTG	2 cut(s)	79, 813
SmlI	CTYRAG	5 cut(s)	315, 541, 1360, 1464, 1472
SmoI	CTYRAG	5 cut(s)	315, 541, 1360, 1464, 1472
SpeI	ACTAGT	1 cut(s)	1295
SsiI	CCGC	1 cut(s)	414
SspI	AATATT	1 cut(s)	324
SspMI	CTAG	6 cut(s)	378, 780, 957, 1296, 1511, 1526
StyI	CCWWGG	2 cut(s)	808, 1044
TaiI	ACGT	1 cut(s)	1447
TaqI	TCGA	4 cut(s)	551, 677, 925, 1276
TatI	WGTACW	2 cut(s)	225, 906
TfiI	GAWTC	3 cut(s)	398, 524, 1283
Tru1I	TTAA	5 cut(s)	87, 252, 557, 576, 732
Tru9I	TTAA	5 cut(s)	87, 252, 557, 576, 732
TscAI	CASTG	3 cut(s)	115, 761, 1507
TseFI	GTSAC	2 cut(s)	877, 1081
TseI	GCWGC	5 cut(s)	515, 704, 863, 1115, 1343
Tsp45I	GTSAC	2 cut(s)	877, 1081
TspGWI	ACGGA	1 cut(s)	1155
TspRI	CASTG	3 cut(s)	115, 761, 1507
VpaK11BI	GGWCC	1 cut(s)	1394
VspI	ATTAAT	1 cut(s)	557
XapI	RAATTY	2 cut(s)	1319, 1478
XceI	RCATGY	3 cut(s)	650, 1520, 1588
XmiI	GTMKAC	1 cut(s)	920
XspI	CTAG	6 cut(s)	378, 780, 957, 1296, 1511, 1526
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.