Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000775

Physical Location & Seq

Genomic Coordinates Forward (+)

1181232 .. 1183953

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG016400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGCCTATAAGCAAATCAAATGGTTCATTAAGACAATTGGATCTGGTGCAGTTCCTATGTACAATGACACTTATGTGGTGAATTACTGCACAATTGGGTCAAGTTGGATTAATTTTGATGATGTAGAGGCTATCAGGGCGAAAGTTTCTTACGCTAAGAAGATGGGGCTTCTTGGCTACAATGTGTTTCAAGTTGGCAATGATGACAATTGGGTGCTCTCTAGGGCAGCAGAACAAGCTGTATTGGATTTAACTGAGACAACCACAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Glyco_hydro_18 Pkinase Pkinase_Tyr

Protein Analysis

90

Amino Acids

10.11

Weight (kDa)

5.13

Isoelectric Point (pI)

24.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_18	PF00704	16 - 68	1.6e-06	Glycosyl hydrolases family 18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000775)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01350 FvH4_1g01363 FvH4_1g01365 FvH4_1g01383 FvH4_1g01390 FvH4_1g01420
malus_domestica	MD02G1011200.v1.1 MD02G1011400.v1.1 MD15G1156200.v1.1 MD15G1156300.v1.1 MD15G1156600.v1.1 MD15G1156700.v1.1 MD15G1156900.v1.1 MD15G1157000.v1.1
prunus_persica	Prupe.7G258600_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258700_v2.0.a1 Prupe.7G258800_v2.0.a1 Prupe.7G258900_v2.0.a1
pyrus_communis	pycom02g01010 pycom02g01020 pycom14g14440 pycom15g14020 pycom15g14030 pycom15g14050 pycom15g14060 pycom15g14080
rosa_chinensis	RchiOBHm_Chr2g0086191 RchiOBHm_Chr2g0086211 RchiOBHm_Chr2g0086231 RchiOBHm_Chr2g0086261 RchiOBHm_Chr2g0086281 RchiOBHm_Chr2g0086301 RchiOBHm_Chr2g0086311 RchiOBHm_Chr2g0086321 RchiOBHm_Chr2g0160801 RchiOBHm_Chr6g0247981 RchiOBHm_Chr6g0247991
rosa_laevigata	RLG00000015749
rosa_multiflora	Rmu_co8497771.1_g000001 Rmu_sc0004510.1_g000014 Rmu_sc0004510.1_g000018 Rmu_sc0004948.1_g000005 Rmu_sc0004948.1_g000017 Rmu_sc0004948.1_g000018 Rmu_sc0004948.1_g000024
rosa_roxburghii	Rroxscaffold_2G00154700 Rroxscaffold_2G00154710
rosa_rugosa	Rorug01G0466400 Rorug01G0466500 Rorug05G0529900
rosa_samantha	Rh2AG016200 Rh2AG016300 Rh2AG016500 Rh2AG016700 Rh2BG016300 Rh2BG016400 Rh2BG016500 Rh2CG017200 Rh2CG017300 Rh2CG017400 Rh2CG017500 Rh2CG017600 Rh2DG018200 Rh2DG018300 Rh6AG044800 Rh6BG039800
rosa_wichuraiana	Rw0G015400 Rw2G001400 Rw2G001410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	49
AfaI	GTAC	1 cut(s)	62
AgsI	TTSAA	1 cut(s)	191
AleI	CACNNNNGTG	1 cut(s)	74
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	1 cut(s)	49
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	227
AseI	ATTAAT	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	251
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	205
BseMII	CTCAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	239
BsgI	GTGCAG	2 cut(s)	69, 73
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	247
BspPI	GGATC	1 cut(s)	49
BsrDI	GCAATG	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	60
BssMI	GATC	1 cut(s)	41
BstAUI	TGTACA	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	156, 255
BstKTI	GATC	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	1 cut(s)	41
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 236
BstV1I	GCAGC	1 cut(s)	239
BstX2I	RGATCY	1 cut(s)	41
BstYI	RGATCY	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	61
CviJI	RGCY	5 cut(s)	5, 131, 169, 177, 239
CviKI_1	RGCY	5 cut(s)	5, 131, 169, 177, 239
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	2 cut(s)	156, 255
DpnI	GATC	1 cut(s)	43
DpnII	GATC	1 cut(s)	41
FaiI	YATR	3 cut(s)	9, 59, 75
Fnu4HI	GCNGC	1 cut(s)	228
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	5
HphI	GGTGA	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	2 cut(s)	50, 90
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 236
HpyF3I	CTNAG	2 cut(s)	156, 255
HpySE526I	ACGT	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	41
LpnPI	CCDG	2 cut(s)	30, 121
Lsp1109I	GCAGC	1 cut(s)	239
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	269
MalI	GATC	1 cut(s)	43
MboI	GATC	1 cut(s)	41
MboII	GAAGA	1 cut(s)	172
MfeI	CAATTG	3 cut(s)	36, 93, 208
MflI	RGATCY	1 cut(s)	41
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	5 cut(s)	36, 82, 93, 112, 208
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	1 cut(s)	121
MseI	TTAA	3 cut(s)	30, 111, 251
MslI	CAYNNNNRTG	1 cut(s)	74
MunI	CAATTG	3 cut(s)	36, 93, 208
MwoI	GCNNNNNNNGC	2 cut(s)	137, 236
NdeII	GATC	1 cut(s)	41
OliI	CACNNNNGTG	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	229
PshBI	ATTAAT	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	41
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	30, 111, 251
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	2 cut(s)	241, 272
SgeI	CNNG	7 cut(s)	57, 114, 148, 185, 203, 234, 248
SmiMI	CAYNNNNRTG	1 cut(s)	74
Sse9I	AATT	5 cut(s)	36, 82, 93, 112, 208
SspMI	CTAG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	272
TasI	AATT	5 cut(s)	36, 82, 93, 112, 208
TatI	WGTACW	1 cut(s)	60
Tru1I	TTAA	3 cut(s)	30, 111, 251
Tru9I	TTAA	3 cut(s)	30, 111, 251
TseI	GCWGC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	16
VspI	ATTAAT	1 cut(s)	111
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.